LOC120569338


Basic Information

Item Value
gene id LOC120569338
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15864532 ~ 15901689 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU167049
GTCAAAGGCTCTAGAAAAAGCAACTGAGTGGACATCGAtttgatattgtttttttttttcttcaactgtTTTGTCCTCGAGTAAAGTGATCCTCCATGAATATTCCAGGGCTCCTTGTTTGTCAGGAAGGCTGTCTCCCTTTCATCTATTCAGCCTTCTGATAGACAACCCTGACACCTGCTCCCTGGGGAGACCCTCCGCCAAGTCAGCGCACTGTTCCTTGAGAGACTTCCCTTACTTTATCAGCCCATAAAGGATTGTCACAGGTGACTATATCAGCTGAGGTATGGAGCTGCTCCCTCTGACCTGCACCGCCGCTGAGAGGTCGAGGCACCACATGGTCGAGGCACCATGCACCGCATCACAAGCGGATTAAGGTGGCTTAAACG
>XR_005640867.1
GTCAAAGGCTCTAGAAAAAGCAACTGAGTGGACATCGAtttgatattgtttttttttttcttcaactgtTTTGTCCTCGAGTAAAGTGATCCTCCATGAATATTCCAGGGCTCCTTGTTTGTCAGGAAGGCTGTCTCCCTTTCATCTATTCAGCCTTCTGATAGACAACCCTGACACCTGCTCCCTGGGGAGACCCTCCGCCAAGTCAGCGCACTGTTCCTTGAGAGACTTCCCTTACTTTATCAGCCCATAAAGGATTGTCACAGGTGACTATATCAGCTGAGGTATGGAGCTGCTCCCTCTGACCTGCACCGCCGCTGAGAGGTCGAGGCACCACATGGTCGAGGCACCATGCACCGCATCACAAGCGGATTAAGGAAAAAGAGGCTGCAGTGTCACAAGCTGGATCACAATAGAATTCAGTTTGCTGTTATCCGATTACCAGCGTCCTGAGAGGCTTTCACAGGCCCATCCATCAAGACTAAGGGGTTGAGGGAGAGCCTTGaaaacgctgctgcagtgatgtaaaCCACTGAAGGATTCATGGTTATTAAAAGGTGGAGAAAATGGAGCCAATCCAATGTTCTGTATCTGAGTTACATTGGGGTTAAAGTGATGATCATAAAGCAGCCAGCGGTGACTGATATGCGAGGTGACACCCGCTGCCTTAGGATGAGGTGATTAGCCTGTGTTTTCTAGCATTATTGCGTTTTACTTCCTGAGAGGCAGCTGGTTCAAtaagatgagaaaaaaacagGCCCT
>XR_005640868.1
GTCAAAGGCTCTAGAAAAAGCAACTGAGTGGACATCGAtttgatattgtttttttttttcttcaactgtTTTGTCCTCGAGTAAAGTGATCCTCCATGAATATTCCAGGGCTCCTTGTTTGTCAGGAAGGCTGTCTCCCTTTCATCTATTCAGCCTTCTGATAGACAACCCTGACACCTGCTCCCTGGGGAGACCCTCCGCCAAGTCAGCGCACTGTTCCTTGAGAGACTTCCCTTACTTTATCAGCCCATAAAGGATTGTCACAGGTGACTATATCAGCTGAGGTATGGAGCTGCTCCCTCTGACCTGCACCGCCGCTGAGAGGTCGAGGCACCACATGGTCGAGGCACCATGCACCGCATCACAAGCGGATTAAGGAAAAAGAGGCTGCAGTGTCACAAGCTGGATCACAATAGAATTCAGTTTGCTGTTATCCGATTACCAGCGTCCTGAGAGGCTTTCACAGGCCCATCCATCAAGACTAAGGGGTTGAGGGAGAGCCTTGaaaacgctgctgcagtgatgtaaaCCACTGAAGGATTCATGGTTATTAAAAGGTGGAGAAAATGGAGCCAATCCAATGTTCTGTATCTGAGTTACATTGGGGTTAAAGTGATGATCATAAAGCAGCCAGCGGTGACTGATATGCGAGGTGACACCCGCTGCCTTAGGATGAGGTGATTAGCCTGTGTTTTCTAGGTAGAGTGTCTGTCTCTATTGACAAGGAATACAGGGAAGACTGTTGAGACAGTCCAGAGTGATTACACCTACTGCCCACCGAAGTCCACTGTTCACATTTCGTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167049 False 389 lncRNA 0.49 3 15884900 15901689
XR_005640867.1 False 762 lncRNA 0.47 7 15865076 15901689
XR_005640868.1 True 805 lncRNA 0.48 7 15864532 15901689

Neighbor

gene id symbol gene type direction distance location
nr4a2a nr4a2,LOC106586168,LOC104920078,LOC103363922 coding downstream 46867 15812684 ~ 15817665 (-)
rprma rprm,LOC102780493 coding downstream 248675 15614674 ~ 15615857 (-)
prpf40a NA coding downstream 278581 15567999 ~ 15585951 (-)
glb1l glb1l,LOC100708354,LOC102776574,LOC102302597 coding downstream 432019 15426799 ~ 15432513 (-)
LOC120569293 LOC104943022,LOC104919017,LOC103370185 coding downstream 446622 15414619 ~ 15417910 (-)
LOC120570325 NA coding upstream 8257 15909946 ~ 15911626 (-)
LOC120569256 cytip coding upstream 14210 15915899 ~ 15919288 (-)
LOC120570316 acvr1c coding upstream 18914 15920603 ~ 15941311 (-)
LOC120570317 acvr1 coding upstream 43174 15944863 ~ 15969969 (-)
LOC120570319 ccdc148,LOC102793443 coding upstream 79685 15981374 ~ 16014154 (-)
G124146 NA non-coding downstream 359820 15502748 ~ 15504712 (-)
G124136 NA non-coding downstream 388384 15475258 ~ 15476148 (-)
trnak-uuu_17 NA non-coding downstream 447260 15417200 ~ 15417272 (-)
G124014 NA non-coding downstream 668314 15178318 ~ 15196218 (-)
G124001 NA non-coding downstream 740587 15116194 ~ 15123945 (-)
G124304 NA non-coding upstream 200467 16102156 ~ 16102355 (-)
G124324 NA non-coding upstream 378895 16280584 ~ 16280878 (-)
G124346 NA non-coding upstream 420796 16322485 ~ 16322657 (-)
G124350 NA non-coding upstream 443599 16345288 ~ 16357884 (-)
G124366 NA non-coding upstream 500069 16401758 ~ 16402030 (-)
G123960 NA other downstream 870743 14984485 ~ 14993789 (-)
G123886 NA other downstream 1070035 14784561 ~ 14794497 (-)
ikzf2 ikzf2 other downstream 1662803 14175814 ~ 14201729 (-)
G123481 LOC106675207,LOC106674584,LOC106676400,LOC106674915,LOC106675345,LOC106676354,LOC106674636 other downstream 3244717 12619353 ~ 12619815 (-)
LOC120570668 LOC103354235,LOC105936145,LOC100692075,LOC108240393,LOC104918665 other downstream 3619527 12232420 ~ 12245005 (-)
G124303 dapl1 other upstream 197589 16099278 ~ 16101593 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other upstream 306001 16207690 ~ 16222736 (-)
gcgb gcg other upstream 476799 16378488 ~ 16380765 (-)
LOC120570068 LOC103362129,LOC101485094 other upstream 479561 16381250 ~ 16389894 (-)
fastkd1 fastkd1,LOC102780871 other upstream 1133684 17035373 ~ 17042372 (-)

Expression


Co-expression Network