fastkd1 (fastkd1,LOC102780871)


Basic Information

Item Value
gene id fastkd1
gene name fastkd1,LOC102780871
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17035373 ~ 17042372 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU167536
CACCATGTCTGCATAGGCTCCTGACTGAAAGGCAATACCCAGGGTTTAAAAAACCCTCGTATTCAGTATGTCACTGGCTACGGAAGTGAAACAGTATGGTACGCATGCACGCATGCTGGGTAATTTTGACTTTGAATGAGCGATTTTAATGACATAATGtatttgtgttatatatcttatgtTTGAAGCGCTGTAATCTGCAGAAACCTAGCTAAGAGTCCAGCTAGCAGGGGTAATCTGGAGTCATTTTAGTTGACACAGGTCCCCGAAGGAGCACCTAACCTATGCTACCTCCAGACTGGAGTTTTGTGGGTGTGATCTCAGCTCGCTGATAGCTGCCTGCCTGTTGGTTTGACGTTGAAGTGCACAGTGGGGACACTGTGTTGGTACAATGAACACCCCAGTGCATTTTTAATTTGAGCCCAGGTCTGTGGTGATGCTTCGGCTCAGGTGTGTGAATTCCTTCCGGCTCGGGAGACTTTTTCATGGGGGGGCAGTGAACCGAGACCAGGTTCTGGAGCAGC
>TU167537
CACCATGTCTGCATAGGCTCCTGACTGAAAGGCAATACCCAGGGTTTAAAAAACCCTCGTATTCAGTATGTCACTGGCTACGGAAGTGAAACAGTATGGTACGCATGCACGCATGCTGGGTAATTTTGACTTTGAATGAGCGATTTTAATGACATAATGtatttgtgttatatatcttatgtTTGAAGCGCTGTAATCTGCAGAAACCTAGCTAAGAGTCCAGCTAGCAGGGGTAATCTGGAGTCATTTTAGGTATTTATTTTTCCATGCACGTGAATACCGCTTTAGCAAACTGAACTTATAGCTATTGGTGTAACTGTTAAGGAAAGTAATATGAAATCTCTGAATGGGGTTGTCTGCGAGATGAACCTGTCTGAGCCTGAGTTGACACAGGTCCCCGAAGGAGCACCTAACCTATGCTACCTCCAGACTGGAGTTTTGTGGGTGTGATCTCAGCTCGCTGATAGCTGCCTGCCTGTTGGTTTGACGTTGAAGTGCACAGTGGGGACACTGTGTTGGTACAATGAACACCCCAGTGCATTTTTAATTTGAGCCCAGGTCTGTGGTGATGCTTCGGCTCAGGTGTGTGAATTCCTTCCGGCTCGGGAGACTTTTTCATGGGGGGGCAGTGAACCGAGACCAGGTTCTGGAGCAGC
>TU167538
CACCATGTCTGCATAGGCTCCTGACTGAAAGGCAATACCCAGGGTTTAAAAAACCCTCGTATTCAGTATGTCACTGGCTACGGAAGTGAAACAGTATGGTACGCATGCACGCATGCTGGTTGACACAGGTCCCCGAAGGAGCACCTAACCTATGCTACCTCCAGACTGGAGTTTTGTGGGTGTGATCTCAGCTCGCTGATAGCTGCCTGCCTGTTGGTTTGACGTTGAAGTGCACAGTGGGGACACTGTGTTGGTACAATGAACACCCCAGTGCATTTTTAATTTGAGCCCAGGTCTGTGGTGATGCTTCGGCTCAGGTGTGTGAATTCCTTCCGGCTCGGGAGACTTTTTCATGGGGGGGCAGTGAACCGAGACCAGGTTCTGGAGCAGC
>TU167539
tgagtttacGTTTAATAAAAAGGTGCTTTATGAATAACATTGCCAATTGCCATATAATGGACAACATAAACGTTACTGACACGGTAGCATTAACGTTGCGACGACAGGGGGATTTTAAACATAATAGTTCGTTGGTTTTTAATTCTATCGTTATGGTTTCACGTAGACACACCGTCACCCTAAACGGTAGGCCTGgcgttagcattagcaaatTAACCTAGCCTCAGTCAGATAACATGTACAGGGATTCTTCTACATGATGTGAACCATACAATTTCGACATATTAACTACACAAATATATCGCCAAGACGTGGTTAATGCGAAATCACATCACCTGGAAAAACAAGGCTATCACTCCATATGGCGAGCAGCTCCCAAAAACGACGGAAATCAAGTTTCATTCAGTGTTGGGCTCACTGTTTTCTAAAGATGGCGCGGCAGGGACGTCAGTATTTCAAGAAGCGTGCGCCAGTCAACGCAGCCGGCACGTAGCTGGGAAACACGGAAACAGTGCGACATTTTATGACCTGAAACTGACCTGTCAGTTGACACAGGTCCCCGAAGGAGCACCTAACCTATGCTACCTCCAGACTGGAGTTTTGTGGGTGTGATCTCAGCTCGCTGATAGCTGCCTGCCTGTTGGTTTGACGTTGAAGTGCACAGTGGGGACACTGTGTTGGTACAATGAACACCCCAGTGCATTTTTAATTTGAGCCCAGGTCTGTGGTGATGCTTCGGCTCAGGTGTGTGAATTCCTTCCGGCTCGGGAGACTTTTTCATGGGGGGGCAGTGAACCGAGACCAGGTTCTGGAGCAGC
>XM_039817651.1
ACGGAAGTGAAACAGTATGGTACGCATGCACGCATGCTGGGTAATTTTGACTTTGAATGAGCGATTTTAATGACATAATGtatttgtgttatatatcttatgtTTGAAGCGCTGTAATCTGCAGAAACCTAGCTAAGAGTCCAGCTAGCAGGGGTAATCTGGAGTCATTTTAGGTATTTATTTTTCCATGCACGTGAATACCGCTTTAGCAAACTGAACTTATAGCTATTGGTGTAACTGTTAAGGAAAGTAATATGAAATCTCTGAATGGGGTTGTCTGCGAGATGAACCTGTCTGAGCCTGAGTTGACACAGGTCCCCGAAGGAGCACCTAACCTATGCTACCTCCAGACTGGAGTTTTGTGGGTGTGATCTCAGCTCGCTGATAGCTGCCTGCCTGTTGGTTTGACGTTGAAGTGCACAGTGGGGACACTGTGTTGGTACAATGAACACCCCAGTGCATTTTTAATTTGAGCCCAGGTCTGTGGTGATGCTTCGGCTCAGGTGTGTGAATTCCTTCCGGCTCGGGAGACTTTTTCATGGGGGGGCAGTGAACCGAGACCAGGTTCTGGAGCAGCGTTTTaaggggtggggggggggggggggggggggggggggggggggggggcaattcCAGAAGGAGAAGCCACAAATGCTCAGGACTGTGGAGCTCATCAAAATCCACCCACAGTTCTTGACTCTCCGGGTTTTGGCGGAGAACAAAATTGCTCTTATGGATGATTTTATGTTGGTTGACATGCTTTACAGTTTCCTCAGGTTGAATGTGGATCCACATGACTCTCTTGTTCAGCAGTTGGTTTCAGAAGCATGGCTCAGAATAGACAGATTTCCAATGGCATCCCTGTCCAAGTTTTCCATCTGTCTCAGTGATCAGCACCTTCAACACAGTCCTCTAATGGGCCACATCACCAGTATTGTGGATCAGAGGTTGTCGTCCATTGATGATGCCAGGATCCTAACTACACTGATGATCAGCATGTCGTCCCTAGTGTCTCCCCGGCTTCGGGATGCCCTGATTAGCAGGGCAGACCATCTCCTAGACACCATGGATCCCTCAAATTACAACAACCCGCGGAGAGTGGTGCAGTTTCTGCGCAACGTCAAGCACAGTTACCGGCCTCTGCTGGAGAAGTGCAACAAGATCATATTGTGCAACATTCCCAGACTGGACGCAGAAAATATCAGCATCATCATGGGGCTGTATCAGTCCCTGCAGTTCAACAACTGTGACTTCAGGCTGGCTGTCAAACAAAGACTAAAAGAACTGATTGATTCAAGCACCGACCCTTTCTCCTTCACCAAACTGTTTGTCGCTCTGGCTCCGATGGCCAGTCAGGAGATCAGAGACGGGTTGGAGAACACTGCCCTCCTGTTGGCGGACGAGCTCAGTGCACATCAGGCTTTGGCTATAGCTGAAGCTCTAGAAGAGATTCAGAGCAGGAATCTTAGCTTACTGAACAAAATTGCATTGGTAATCCAAAGGAACCTTCATTGCTACAAGCCAGTGGAGGTGGCCAGAATCACCCAAGCTCTTTTTCTGCTGCAGTACCAGAACCCCGAACTCTTCACTAAACTAAGAAACATTTTGGTCAACTTTTTGCAGCGCAGCTTCTTCCCCTACGAGGTGACCATGTTGACCCGTGTTCTGTCTATGCTGCCCTGCCCGCGGCTTGACGAGGGCGTGATCTCAAGGGTGGATGCGGTAGTGACCCAGTGCAATCTCAATGACCTCAACACCATTTCTTTCGCCGTTGCCAAGTGGGTGCGCAATGATCCCTCCTACCGCCACAACACTCCCAGCAAGTACGTCCGTCTGCTGCAGACCCTAAATCGTTGCGGGCACGAGAGGCTGCAAACGGCAGACCGGCTGGACTTGGTGCTGGAGGAGCTCAAGTACATTTCGGGAGAGTGGTTTGAGGAAATGCTACTGGAAGAGACGATGGTCACGCTGAAGAGGATGATGGACCAAATAAACTGGACCAATGTGCCTGAGCTGGCCCTCTTCTTAACCAGGATAAATCACCTCTGCCCTCCCCTGATGGACCGTATCGCCAGTATGGCCATTAAAGACATTGACAAGATTCACCACTCGGCAACCTATGCTACCCTGCTACCCTTCTCTGTCCTGAATTATGATCCTGTGCAAGCAGACGAGTTGTATGATGTTTGTATTCAGCGCTTCACGCCTCATATCAGGTCCTTTGACCCACATCTGCTAGTTCTCCTGGCGTACACTTTGGCTGTGGCCGACTGTTTTCCTGAGGAACTGGTCAAAGAAATCTTCAGTATAGACTTTCTGGGAAAGCTGGATGCCCAACTAGAAACTCTACCTGATAACCTAAACATGCGGACCAGACTACGCCTCATGGAGCTCAATCGTGCCGTGTGTCTCGAGTGTCCAGAGTTCCAGGTGCCCTGGTTTCATGAGCGCTACTGCCAGCAGTTGCAAAAGAAAGggaATGGCACTGTGAGTCCTGTGCAACAGCAAATCCACAAAATGCTGGGCGAGGTTCTCGGTGGCATTAACTATGTTCGAGTAGCAGTTGTCACTCCATATTTTTACACTGCAGACTTTGAATGCATACTGGACAAACATCTGCAGCCGTTGCCCTACAGCGAGCCCAGCACACTGCAGATCTCAGACAGAGGAAAAGTTCACTGGGGGACCAGCTCAGTGGAAAACATGAGGGATGAGCTGCCACCTGGAGCTCAGCGAGTTGCTGTGGACTTTCTTGATTCAAAGTCCTTCTGCAAGAACTCTCACCATATGAAAGGCGAAGCCCTGATGAGAAAACGACACCTTGAAATTCTGGGATATAGTGTGGTTCAGGTCCCTCACTTTGAATGGAACTCTATGGAGCTTTCAACACCAGATGCCTGGAAGGACTATCTAAAGAAGAACCTGTTTAGAGAGCTTTCTTCTTGAAGGCCTTTATTTATTGAATAATGAAAGTAATGTTGCATTTAACACtttgacagtgttttgaaaACTGTTAATATACATCAAGTGTTCCTTACTCTATTGAGCGCAAAGTTGACATGAATCTACCTCGTTCATGTTAAGTGAGATTG

Function

symbol description
fastkd1 Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Orthologous to human FASTKD1 (FAST kinase domains 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167536 False 524 lncRNA 0.48 2 17040193 17041018
TU167537 False 656 lncRNA 0.46 2 17040193 17041018
TU167538 False 391 lncRNA 0.52 2 17040193 17041018
TU167539 False 818 lncRNA 0.46 2 17040193 17042372
XM_039817651.1 True 3092 mRNA 0.49 16 17035373 17040939

Neighbor

gene id symbol gene type direction distance location
LOC120570071 lrp2 coding downstream 50234 16974305 ~ 16985139 (-)
lrp2a lrp2 coding downstream 59206 16938250 ~ 16976167 (-)
abcb11a abcb11,LOC102784145 coding downstream 130233 16895676 ~ 16905140 (-)
spc25 NA coding downstream 143699 16887828 ~ 16891674 (-)
stk39 stk39 coding downstream 173147 16833693 ~ 16862226 (-)
ccdc173 NA coding upstream 7552 17049924 ~ 17058311 (-)
mettl5 mettl5,LOC102779255 coding upstream 31986 17074358 ~ 17078125 (-)
tlk1a tlk1 coding upstream 208010 17250382 ~ 17271042 (-)
mettl8 mettl8 coding upstream 229368 17271740 ~ 17277883 (-)
slc25a12 slc25a12,LOC102297988 coding upstream 262399 17304771 ~ 17324588 (-)
G124561 NA non-coding downstream 8183 17026334 ~ 17027190 (-)
G124539 LOC100705499,LOC104961141,LOC102783488,LOC107082002,LOC103461718 non-coding downstream 103907 16910171 ~ 16931466 (-)
G124503 NA non-coding downstream 151199 16883434 ~ 16884174 (-)
G124463 NA non-coding downstream 258639 16763655 ~ 16776734 (-)
LOC120569756 NA non-coding downstream 412962 16621943 ~ 16622411 (-)
G124580 ppig non-coding upstream 5634 17048006 ~ 17114063 (-)
G124588 NA non-coding upstream 15407 17057779 ~ 17060290 (-)
G124590 phgdh,LOC102779828 non-coding upstream 20334 17062706 ~ 17065537 (-)
G124601 ubr3 non-coding upstream 52071 17094443 ~ 17099028 (-)
G124606 NA non-coding upstream 82509 17124881 ~ 17127544 (-)
LOC120570068 LOC103362129,LOC101485094 other downstream 645479 16381250 ~ 16389894 (-)
gcgb gcg other downstream 654608 16378488 ~ 16380765 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other downstream 812637 16207690 ~ 16222736 (-)
G124303 dapl1 other downstream 933780 16099278 ~ 16101593 (-)
G123960 NA other downstream 2041584 14984485 ~ 14993789 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other upstream 1070738 18113110 ~ 18115097 (-)
prkra prkra other upstream 1114360 18156732 ~ 18163749 (-)
G125089 dct,LOC102781940 other upstream 1653108 18695480 ~ 18699802 (-)
G125090 NA other upstream 1658515 18700887 ~ 18704677 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 2189615 19231987 ~ 19258846 (-)

Expression


Co-expression Network