Gene
RNA
| Item | Value |
|---|---|
| gene id | G124794 |
| gene name | chrna1 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053123.1 |
| NCBI id | CM020920.1 |
| chromosome length | 39440604 |
| location | 17664672 ~ 17666075 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| chrna1 | Enables cation channel activity. Contributes to acetylcholine binding activity and acetylcholine receptor activity. Acts upstream of or within several processes, including chemical synaptic transmission; chondrocyte intercalation involved in growth plate cartilage morphogenesis; and skeletal muscle fiber development. Part of acetylcholine-gated channel complex. Is expressed in adaxial cell; musculature system; and somite. Used to study congenital myasthenic syndrome. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 1A and congenital myasthenic syndrome 1B. Orthologous to human CHRNA1 (cholinergic receptor nicotinic alpha 1 subunit). |
| description |
|---|
| cholinergic receptor nicotinic alpha polypeptide 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU167828 | True | 501 | lncRNA | 0.50 | 2 | 17664672 | 17666075 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| scrn3 | scrn3,LOC102796247 | coding | upstream | 16420 | 17643338 ~ 17648252 (+) |
| sp9 | sp9 | coding | upstream | 29733 | 17632728 ~ 17634939 (+) |
| cdca7a | cdca7 | coding | upstream | 132416 | 17527950 ~ 17532256 (+) |
| zak | LOC104965553 | coding | upstream | 137968 | 17501695 ~ 17526704 (+) |
| rapgef4a | rapgef4,LOC101483582 | coding | upstream | 166588 | 17465228 ~ 17498084 (+) |
| hoxd12a | hoxd12 | coding | downstream | 201787 | 17867862 ~ 17870159 (+) |
| hoxd11a | hoxd11 | coding | downstream | 207607 | 17873682 ~ 17878153 (+) |
| hoxd9a | hoxd9,LOC100697606,LOC102311238,LOC101477388,LOC102193136,LOC102792463 | coding | downstream | 216391 | 17882466 ~ 17884616 (+) |
| hoxd4a | hoxd4 | coding | downstream | 229937 | 17896012 ~ 17899698 (+) |
| hoxd3a | hoxd3 | coding | downstream | 235004 | 17901079 ~ 17909596 (+) |
| LOC120569550 | NA | non-coding | upstream | 50605 | 17605145 ~ 17614067 (+) |
| G124671 | NA | non-coding | upstream | 165913 | 17469748 ~ 17498759 (+) |
| G124661 | NA | non-coding | upstream | 226853 | 17437361 ~ 17437819 (+) |
| G124631 | NA | non-coding | upstream | 401846 | 17261737 ~ 17262826 (+) |
| G124627 | tlk1,LOC102777640 | non-coding | upstream | 407170 | 17256842 ~ 17257502 (+) |
| G124797 | chn1,LOC102233772 | non-coding | downstream | 6180 | 17672255 ~ 17674455 (+) |
| G124804 | NA | non-coding | downstream | 21496 | 17687571 ~ 17687814 (+) |
| G124816 | atp5g3,LOC102234286 | non-coding | downstream | 63981 | 17730056 ~ 17733251 (+) |
| G124819 | NA | non-coding | downstream | 70035 | 17736110 ~ 17736986 (+) |
| G124834 | NA | non-coding | downstream | 168144 | 17834219 ~ 17836226 (+) |
| myo3b | myo3b | other | upstream | 466082 | 17127881 ~ 17198590 (+) |
| col28a2a | LOC103355072,LOC104961148,LOC102781941 | other | upstream | 641112 | 16988071 ~ 17023560 (+) |
| dap1b | dapl1 | other | upstream | 1563030 | 16099271 ~ 16101642 (+) |
| LOC120570321 | NA | other | upstream | 1686798 | 15970982 ~ 15977874 (+) |
| galnt13 | galnt13,LOC102796746 | other | upstream | 2003658 | 15618514 ~ 15661014 (+) |
| hoxd10a | hoxd10,LOC102792757 | other | downstream | 194085 | 17860160 ~ 17881328 (+) |
| hnrnpa3 | hnrnpa3 | other | downstream | 344682 | 18010757 ~ 18017413 (+) |
| G125079 | NA | other | downstream | 1036953 | 18703028 ~ 18704528 (+) |
| LOC120570507 | NA | other | downstream | 1152678 | 18818753 ~ 18827547 (+) |
| tmsb4x | NA | other | downstream | 1423343 | 19089418 ~ 19090785 (+) |
