LOC120570508


Basic Information

Item Value
gene id LOC120570508
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18815846 ~ 18819321 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU168264
AGGACATGGGGAATTGTTCTGCACAAAGGTTAACTGTGAAATGGTTCTCTTATATCTAATACAAAATGTTTATAATCCTTATGTACCATCCATCTTGTCACTAATGATACTGTAATGATAGGGTTTGACAAATtcaacattaaaaataaatatttccattggct
>TU168265
GTTGGGACTCTCATCATGTGTGTACCCACTTTTAATTGTGGCAGTTCTCTGTTAGTTTTGCATAGTTGCGCTCCAAGAAGAAATACGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGTGTTTTCATCTGAATcctcttttattattgtttcttcCTCCATGGTGGTCAATCAGGTTTCCACTACAACTCTGTTAATATGGC
>XR_005641073.1
ACTCTACTCGCGCCACTTTCGCAATCTTACTACGATTCAGAAACTCCTAGCAAATCATAATAGTAGCACATGGTTATGCTTTTTGGATTATATGTCTTAAGTCCTTCTTTTCTCAGTTTTGCAGATACCCCCGAAACAGTGTGAGTAAACGACCCCTGCGCACATCTGTATCTCGTGTGGAAAGCCCCTCATTGTGGATTTAAAGGCATCCTATTTCATTCTGTGATCGAAAACTCCACATGAACAGTTTGAAGTCACTGTAGTGTCAAAGTGCTTACAGTGCAGGTAGCTCTATAAAATCTACTGCAGTGAAGGCACTTTCAGCACTATTCTGATAATGTTAACTAAAGGAGCAGGCTTATTTACAGACACGACTGGTTTATGCTAGAACGGGATAGACTGAATCTAAATACACATCTGGCAGGACCTTGTTATCATCCTGCGGTGATGTTCGGCCCCTGCTGTTCCTGAGTGAGGCAGCTGTGTCTGGAGCGAGGCCCCTCTCATCAAACATGCTTGTTATTGTGAGACATCATGCATATTTTGCACTTACAAGCCTTCCACTAGTGCTTATGCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGACTAGCACCTACTGCCCTAAGTGCTCCTTCTGGCATAAGGAGTTGGGACTCTCATCATGTGTGTACCCACTTTTAATTGTGGCAGTTCTCTGTTAGTTTTGCATAGTTGCGCTCCAAGAAGAAATACGTTGTGCAAATCTATGCAAAACTGATGGTGGCCTGTGTTTTCATCTGAATcctcttttattattgtttcttcCTCCATGGTGGTCAATCAGGTTTCCACTACAACTCTGTTAATATGGCAAATGTTTAAGTAGTATTAAAGTGCTTATAGTGCAGGTAGTTTTATGAAATTCTACTGCAGTGTGAGCACTTAAAGTACTTCTTAGACCCATTTCTTCTTGGAACACTGCAACTGCAGAGGTAGCTTATGCACATGGGTCTCTGGTTAGTTTTGCTTGTTTGCTTTCAGCTTTTTACTGTACTGCTGTGCAAATCCATGCAAAACTGATCATAGAGCTGAAATCTTCTGAAATCTATCAGATGTGATCCCTTTCTGTGCAGGTTGGGAGAGGTGGCAATGCTCTGTACTTGTGTGGTATTGCACTTGTCCCGGCCTGTTGAGGACATGGGGAATTGTTCTGCACAAAGGTTAACTGTGAAATGGTTCTCTTATATCTAATACAAAATGTTTATAATCCTTATGTACCATCCATCTTGTCACTAATGATACTGTAATGATAGGGTTTGACAAATtcaacattaaaaataaatatttccattggct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168264 False 164 lncRNA 0.31 1 18815846 18816009
TU168265 False 205 lncRNA 0.40 1 18816330 18816534
XR_005641073.1 True 1337 lncRNA 0.41 2 18815846 18819321

Neighbor

gene id symbol gene type direction distance location
gpc6b gpc6,LOC104947503 coding downstream 26552 18704688 ~ 18789294 (-)
LOC120570238 cldn10,LOC103391834,LOC104947506 coding downstream 207032 18606426 ~ 18608814 (-)
LOC120570204 NA coding downstream 210675 18603123 ~ 18605171 (-)
LOC120569518 LOC101478235,LOC102203487,LOC102783581,LOC104922687,LOC104947508 coding downstream 214464 18599472 ~ 18601382 (-)
dnajc3a dnajc3 coding downstream 217391 18581236 ~ 18598455 (-)
slitrk5b slitrk5,LOC100690770 coding upstream 29968 18849289 ~ 18852790 (-)
LOC120569248 LOC102780588,LOC100690496,LOC101481378,LOC102206814,LOC103352953 coding upstream 53742 18873063 ~ 18885787 (-)
pcdh8 LOC104947529,LOC103352945 coding upstream 79355 18898676 ~ 18903097 (-)
ednrbb LOC103352943,LOC104947527 coding upstream 124030 18943351 ~ 18947075 (-)
cog3 cog3,LOC102779731 coding upstream 142968 18962289 ~ 18975007 (-)
LOC120569840 NA non-coding downstream 603890 18208738 ~ 18211956 (-)
G125000 NA non-coding downstream 723316 18092327 ~ 18092530 (-)
G124872 NA non-coding downstream 792369 18022409 ~ 18023477 (-)
LOC120569506 NA non-coding downstream 993359 17737284 ~ 17822487 (-)
G124691 NA non-coding downstream 1465100 17347911 ~ 17350746 (-)
G125108 NA non-coding upstream 8221 18827542 ~ 18828502 (-)
G125112 NA non-coding upstream 24779 18844100 ~ 18844338 (-)
G125113 NA non-coding upstream 25225 18844546 ~ 18845295 (-)
G125116 NA non-coding upstream 26511 18845832 ~ 18847369 (-)
G125173 frmpd4,LOC100710969,LOC102314130 non-coding upstream 253914 19073235 ~ 19076766 (-)
G125090 NA other downstream 111169 18700887 ~ 18704677 (-)
G125089 dct,LOC102781940 other downstream 116044 18695480 ~ 18699802 (-)
prkra prkra other downstream 652097 18156732 ~ 18163749 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other downstream 700749 18113110 ~ 18115097 (-)
fastkd1 fastkd1,LOC102780871 other downstream 1773474 17035373 ~ 17042372 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 412666 19231987 ~ 19258846 (-)
G125326 dopey2 other upstream 776608 19595929 ~ 19597521 (-)
si:ch211-214p13.3 NA other upstream 932380 19751701 ~ 19768586 (-)
LOC120570223 NA other upstream 970731 19790052 ~ 19796220 (-)
si:ch211-214p13.7 NA other upstream 1101947 19921268 ~ 19923735 (-)

Expression


Co-expression Network