G125311 (LOC103352916,LOC105938264)


Basic Information

Item Value
gene id G125311
gene name LOC103352916,LOC105938264
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19547715 ~ 19550418 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU168559
GTGAAAACAAacgtgttccttgggagtgaTTTAtacaaaccacgatcttttcctaaacttaaccgtatctccgccgaaattccgccggatgaaTGTATTTTCgctgatgtccgtttccttctgctttcttagtgttggaattttaaactccggtggatttatgaggactatggctaactagctcctcagatctctgcatggtgaaaaacatttaatgtgGGATGTTGTGATttcacaacaaaaaaatgtgtttctaaCTAACAACTTACTATCCATGAACAAAGTTACATGACTACACTAACTAACAGTTAAACTACTAGAAAGGCTGCTAAAATGTATCAATCATTGTaacataaaattacaacaatcaAATGCCGTAAAAAGgtcgatacaaatatttatttttttacaaatgtgacTTTGACACAGCTGCTGTGATTTTACATGTTCTGTTGTATAAAAGAAGACAGGAACAAAGTATTTGGAAAAGCATCTCTTTTCTTCATTATGttccctttcttctctctctcactctctcgctctctcacacacacacacacacacacacacacacacttgaaaacTGTACATGTATGCTGAGCACATCCTAAATATGTATAACTGAGGCACGTGTAGTCAAGAACTATTTACAACCATCAACACTCTAAAAGCCTAAACAAAACTACACCATCATTGACCACAGTAACACTTGTGTAAATATAAATTTACAACATAACAGTGCTCATAAATACAAAGGGTTTGAAAAAAACAGATTAAATATTCATACGAATCAACAGTTTGATTGAAGCTCAGGACAGTGTTCCTGTTCCAGTAGCTGCAGATAGGTGGCAGTAGTGTGATACTGAGACAAAATACTGACAGCAGAAATACTGACACTGGGTTGATCTGATTTACACTAAATTATTCATTTGCAGCACATGTTTAAACACTTGCCAGCATGAAATAAGTGACTATTCATTTAGGTGAGAAagtaggttaggttaggttatgcATTTTCTTGTGCTCCATGATTTACATTATGCAGATGGGTGCTGTAACAATACACTCTCCTCATGATGAATTAAGATGAAAATCAGTggcatatgttttaaaattaaacagcACAAAGGCAACAGTTTTAACACAAGATATAAAAGGTCACCCACATAAACCTAATAGCGTTCTCTCTGCTGGCCTACAAAAAGATCAGTGTACACTGCACACACTTGACTGTACATACACAATAAGTGGTCACGTGTTTGCTCACAATCTATTGGCTAGAACCATCTATATTCAGCTGTACTGTGGTTGCACTCAGTCCAAGAGATTCCAGTGATTTTGACATTTACAAACATGTTTCATCTATTTACAGTACAGTTATCGCCACAATAACAGTGCAGACAGACAAGGTAAAAAAACATATCTttgacaatgtaaaaaaaaaatctagcaATGCACAATTTTGATATAAAAAGTCTGGAAGGATAAAGTATATTcacatataaatactgtacatacatctGTAATACAGGGCAGTTAAATAATTGTTGTGAAAACTAAAAGAGTAGTTTGGGAGAAAAAGGGTTCAGGTTATATCAAATGTCCCAGTCACTAACGCTAAGGCGAAAGAAGAGACAGGTCTAGACAGATCCTGAGTGTACgctacactcaaaacacatACTTTTTCATCCTAAATCACACACACTGCTCAAAAATCATGAACTCCCCCACGCAGGCACACACTGGCACAtgcaaataaaaggaaaaagaagGTTTGTGAGGGTCATCTGTCGTGCATAGAGGAATACCTGAACTGTGTTCTGCAAACGTCAGGACAGAGAAATCCAAGCATACTCCCTCCCATTTTCTGTCTTTGATCACCTTTCATGTTGCTCGGGACAAAGACAAGGAAACAAAGATATTCTTTGTGAGGAAATTACAtaaacaaaagtacaaaaaaaacagtacaaaaaGTCATTGTTTGAAAAATTCAGTCGGAGATGTGTAACAGTCCTGTAAGTCCAGATCAGCAGCACTGGTCCACTGCGTTAAACTGAGGTTTCTGATTGGAGCAGCAGTATAAACTTGTGAGACTTGGGGTCTATGTACTCCTCAGTCAGTCTGATGTACGGGATGCCCTTGACGGTCACAGCTAAGCTAAAGTCAAGACATCTTAGCAGGAACTCTGACCCCTCCTTTATGCCGCCGGTGACAGAAGCCTCGCTGACCAAAGTCCACTGGTCTGCCATCCAGCGCTCAGGGCCGTACTGCAGGGTCGGACCAGGGGCCAGGTATGCCTCGAGGAACGCct

Function

NR:

description
PREDICTED: vang-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168559 True 2311 lncRNA 0.39 2 19547715 19550418

Neighbor

gene id symbol gene type direction distance location
ackr3a ackr3,LOC104934108 coding downstream 49155 19491511 ~ 19498560 (-)
rpe LOC101467395,LOC103352918,LOC103134215,LOC106919839 coding downstream 78983 19465724 ~ 19468732 (-)
klhl6 klhl6,LOC102796948 coding downstream 192425 19349763 ~ 19355290 (-)
LOC120570610 NA coding downstream 198656 19338941 ~ 19349059 (-)
LOC120570636 LOC104963478 coding downstream 325770 19214753 ~ 19221945 (-)
casq2 LOC103352915,LOC101061703,LOC100712579,LOC102192454 coding upstream 908 19551326 ~ 19556641 (-)
LOC120570428 kcne2 coding upstream 7092 19557510 ~ 19559519 (-)
LOC120570427 LOC103352913,LOC100708017,LOC104953986 coding upstream 20453 19570871 ~ 19575591 (-)
acp6 acp6 coding upstream 145033 19695451 ~ 19702019 (-)
gja5a gja5 coding upstream 154410 19704828 ~ 19715920 (-)
G125299 LOC103352919,LOC102305963 non-coding downstream 88470 19454417 ~ 19459245 (-)
G125295 igsf3,LOC103352919,LOC104967650,LOC105938266 non-coding downstream 107864 19439426 ~ 19439851 (-)
G125294 LOC104967650,LOC103352919 non-coding downstream 111668 19435642 ~ 19436047 (-)
G125293 LOC103392014,LOC104967650 non-coding downstream 115284 19432064 ~ 19432431 (-)
G125227 NA non-coding downstream 341774 19201746 ~ 19205941 (-)
G125315 NA non-coding upstream 19192 19569610 ~ 19570807 (-)
G125398 bcl9 non-coding upstream 127583 19678001 ~ 19680728 (-)
G125411 NA non-coding upstream 180037 19730455 ~ 19730711 (-)
LOC120569251 NA non-coding upstream 231675 19782093 ~ 19782621 (-)
LOC120569252 NA non-coding upstream 232310 19782728 ~ 19784773 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other downstream 288869 19231987 ~ 19258846 (-)
G125090 NA other downstream 843038 18700887 ~ 18704677 (-)
G125089 dct,LOC102781940 other downstream 847913 18695480 ~ 18699802 (-)
prkra prkra other downstream 1383966 18156732 ~ 18163749 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other downstream 1432618 18113110 ~ 18115097 (-)
G125326 dopey2 other upstream 45511 19595929 ~ 19597521 (-)
si:ch211-214p13.3 NA other upstream 201283 19751701 ~ 19768586 (-)
LOC120570223 NA other upstream 239634 19790052 ~ 19796220 (-)
si:ch211-214p13.7 NA other upstream 370850 19921268 ~ 19923735 (-)
G125619 col4a2 other upstream 908744 20459162 ~ 20461629 (-)

Expression


Co-expression Network