LOC120570047 (dynlt3)


Basic Information

Item Value
gene id LOC120570047
gene name dynlt3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20734550 ~ 20738320 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169175
TTTACAACAGGAAGTAAACAGGAACAATAACTGAACCTGACCGGTGATAATTAAGATAACATACCTCTGTATCGGTGTCAGTAACGATGGAGGAATATAACTCTGGAGATGAGGTTGTCTTCAATGCCGACGAGGTTAATATCTCCGTTAAAGAGAAGGTGTTATTGGTGGAACAGATTACAACCAGAGTAAAGTGAACCAGTGGACGGCCAGTATAGTGGAGCACTCCCTGACTCACCTGGTAAAACAAGGACGGCCGTTCAAATACATAGTAAACTGTGCGGTCATGCAGAAGAGCAGCGCTGGTCTCCACACAGCCAACTCCTGCTACTGGGACACTGCCACTGATGGAAGCTGCACAGTGAGGTGGGAGAATCGCACCATGTACTGTGTGGTCAGTGTGTTTGCTGTTGCTGTGGCGCtgtgagctgctctctctctctctcctaacACCATATTGTCTGAAGCTTGAAATGGCACGGTGACCAAGAAGCCACGAAGATCCTCTGTATGTACAAGTAGCTTATTTCTCCCTACAGGCTTGAACAACTTAATGTCAGGATAAGAATTGTGGTTTGCGAGTCGACAGCCTGCGTTTGTGTGAGAAAATGTTGCTTTGTCAGGACCAAAGTCAGAATTCAACGCTGAAGCAGTGACTTATTTGGTCAGCAGATGTTAAGAAgttaaaactaaatatttttgtCCCAAATTTTGTAATCTGTGTATAACGTAAAGCCTGATTagttttagccatgctagcagcaagACTCTGGGGATGGCAGTGTCAGTCAGTCCACCACtatggtccagactgaaatatgtcAACGACAATTGGATATATTGACATTACATTTGCTACACACATTCAAGCCTCCATCAGGATAAATTTTAATGagtttggtgatcctctgacttttcctctagtgttatcatcaggtcaaaattctGATTAGTCCAATACTTGGAACTAATTAAatttccatcagcctcagctctaCTTTGTGATTAGCTTGCTGACATTAGCCTTTAGCTTTAAGCACTGCTTTGCCGAAGTACGGCCTCAGGGAGCTGCTAGTATGGCTTTAGACTATTTTCATTTGTCTCCTTCAGTTCATTCCCTCATAAAACAGTTGCTGTAGTTTGGTATTTATGAAAAGTCTGACTGTTGTGTTTTAGTAGTGTAGTGTCCTCTGTGTCCCCCCTTTTGGGACAATGTGTCTGACTCCAATAAAAGACCTACTGTATATATCCCCGCGCATTTGTTAAATTGGTATTACATTGATCCTAAGCAAGAGCCAAATAGGATAAGATAAAGTCAGATACATTTGTTTAATCAGTCAAGAGTTTCAATACACAGATCTGTGGGATCACAAAGCACGCAGAGACGAAGTTTCCTTAGCAACAGACAAAAAGCTGGAGCTGGTCCACGTATTTCTAGACTGTCGGACCTCGTGAGCCCCGATCTATTCTTCCCCTCATCTCTTATACTTTCTTTCTTGGGCCCCCTCTTCTTCTCCCGCACAGGGACTGCTATCTTCACACAACACCTGCCAGGGTGGGGGCCACTGTATTATGTCTCGTCCTCATTTGCTCTCACTCGAAGCAGTACATTCTGTTCCTGTTTCATTTGTTATTATTGCTCAATGTACTTTGATCAAGGCCACTGTGACCCAAACTATCTTATATTTACCGCTTAAGCTAAACCAGCTGTGTGTCAGTTTCCTTTATTTGGGCAGCACACAACTCTGTTCAATAAGCGtacaccaaaacacacttgGTCTCTTATGGAAACCTTTTACATTCTTATTATATTTATCTGCAACTAGTAAGAACATTATTCTACAGTAGCTACCTGACTACTTGTATAAAGTGTCTCTACTAGTCGTTGCAGAATTTATATGAAAGTGTGTATTTCCAGGAAGATGGGGCTGTTTATTGGTCAGAAGGACTAATGCACTTTTTCTAGAACTTTTCCATAGAAATTCTGGC
>XM_039818276.1
TGCAGAAATGTCTTTTCTGTGCTCTTTGACTCTTTACAACAGGAAGTAAACAGGAACAATAACTGAACCTGACCGGTGATAATTAAGATAACATACCTCTGTATCGGTGTCAGTAACGATGGAGGAATATAACTCTGGAGATGAGGTTGTCTTCAATGCCGACGAGGTTAATATCTCCGTTAAAGAGTGTATAGAAGGTGTTATTGGTGGAACAGATTACAACCAGAGTAAAGTGAACCAGTGGACGGCCAGTATAGTGGAGCACTCCCTGACTCACCTGGTAAAACAAGGACGGCCGTTCAAATACATAGTAAACTGTGCGGTCATGCAGAAGAGCAGCGCTGGTCTCCACACAGCCAACTCCTGCTACTGGGACACTGCCACTGATGGAAGCTGCACAGTGAGGTGGGAGAATCGCACCATGTACTGTGTGGTCAGTGTGTTTGCTGTTGCTGTGGCGCtgtgagctgctctctctctctctcctaacACCATATTGTCTGAAGCTTGAAATGGCACGGTGACCAAGAAGCCACGAAGATCCTCTGTATGTACAAGTAGCTTATTTCTCCCTACAGGCTTGAACAACTTAATGTCAGGATAAGAATTGTGGTTTGCGAGTCGACAGCCTGCGTTTGTGTGAGAAAATGTTGCTTTGTCAGGACCAAAGTCAGAATTCAACGCTGAAGCAGTGACTTATTTGGTCAGCAGATGTTAAGAAgttaaaactaaatatttttgtCCCAAATTTTGTAATCTGTGTATAACGTAAAGCCTGATTagttttagccatgctagcagcaagACTCTGGGGATGGCAGTGTCAGTCAGTCCACCACtatggtccagactgaaatatgtcAACGACAATTGGATATATTGACATTACATTTGCTACACACATTCAAGCCTCCATCAGGATAAATTTTAATGagtttggtgatcctctgacttttcctctagtgttatcatcaggtcaaaattctGATTAGTCCAATACTTGGAACTAATTAAatttccatcagcctcagctctaCTTTGTGATTAGCTTGCTGACATTAGCCTTTAGCTTTAAGCACTGCTTTGCCGAAGTACGGCCTCAGGGAGCTGCTAGTATGGCTTTAGACTATTTTCATTTGTCTCCTTCAGTTCATTCCCTCATAAAACAGTTGCTGTAGTTTGGTATTTATGAAAAGTCTGACTGTTGTGTTTTAGTAGTGTAGTGTCCTCTGTGTCCCCCCTTTTGGGACAATGTGTCTGACTCCAATAAAAGACCTACTGTATATATCCCCGCGCATTTGTTAAATTGGTATTACATTGATCCTAAGCAAGAGCCAAATAGGATAAGATAAAGTCAGATACATTTGTTTAATCAGTCAAGAGTTTCAATACACAGATCTGTGGGATCACAAAGCACGCAGAGACGAAGTTTCCTTAGCAACAGACAAAAAGCTGGAGCTGGTCCACGTATTTCTAGACTGTCGGACCTCGTGAGCCCCGATCTATTCTTCCCCTCATCTCTTATACTTTCTTTCTTGGGCCCCCTCTTCTTCTCCCGCACAGGGACTGCTATCTTCACACAACACCTGCCAGGGTGGGGGCCACTGTATTATGTCTCGTCCTCATTTGCTCTCACTCGAAGCAGTACATTCTGTTCCTGTTTCATTTGTTATTATTGCTCAATGTACTTTGATCAAGGCCACTGTGACCCAAACTATCTTATATTTACCGCTTAAGCTAAACCAGCTGTGTGTCAGTTTCCTTTATTTGGGCAGCACACAACTCTGTTCAATAAGCGtacaccaaaacacacttgGTCTCTTATGGAAACCTTTTACATTCTTATTATATTTATCTGCAACTAGTAAGAACATTATTCTACAGTAGCTACCTGACTACTTGTATAAAGTGTCTCTACTAGTCGTTGCAGAATTTATATGAAAGTGTGTATTTCCAGGAAGATGGGGCTGTTTATTGGTCAGAAGGACTAATGCACTTTTTCTAGAACTTTTCCATAGAAATTCTGGCATACTTGTGTAAAACTAAGTTCATGAAGGCTctttaataaattaatttattggAACGTC

Function

symbol description
dynlt3 Predicted to enable dynein intermediate chain binding activity. Predicted to be involved in microtubule-based movement. Predicted to be part of cytoplasmic dynein complex. Predicted to be active in cytoplasm and kinetochore. Orthologous to human DYNLT3 (dynein light chain Tctex-type 3).

NR:

description
PREDICTED: dynein light chain Tctex-type 3

GO: NA

KEGG:

id description
K10420 DYNLT; dynein light chain Tctex-type 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU169175 False 1989 lncRNA 0.42 5 20734609 20738288
XM_039818276.1 True 2087 mRNA 0.42 5 20734550 20738320

Neighbor

gene id symbol gene type direction distance location
LOC120569295 grpr,LOC103352898,LOC100697445,LOC101071331,LOC101471274,LOC102795360 coding downstream 14787 20715586 ~ 20719763 (-)
LOC120569729 LOC103352860,LOC100709268 coding downstream 69666 20649268 ~ 20664884 (-)
u2af1 LOC103352857,LOC103391595 coding downstream 97945 20630090 ~ 20636605 (-)
cbsb NA coding downstream 122889 20589788 ~ 20611661 (-)
ankrd10b ankrd10,LOC102292027 coding downstream 219347 20499453 ~ 20515203 (-)
srpx srpx,LOC102777533 coding upstream 36758 20775078 ~ 20792247 (-)
rpgra NA coding upstream 57397 20795717 ~ 20809233 (-)
dcaf6 NA coding upstream 86454 20824774 ~ 20850992 (-)
rpl24 rpl24 coding upstream 122894 20861214 ~ 20865558 (-)
LOC120570677 NA coding upstream 125465 20863785 ~ 20863953 (-)
G125720 NA non-coding downstream 21401 20710865 ~ 20713149 (-)
G125708 NA non-coding downstream 37310 20691897 ~ 20697240 (-)
G125703 NA non-coding downstream 47637 20686696 ~ 20686913 (-)
G125701 NA non-coding downstream 50140 20683895 ~ 20684410 (-)
G125694 NA non-coding downstream 67145 20667046 ~ 20667405 (-)
G125784 NA non-coding upstream 19387 20757707 ~ 20759225 (-)
G125800 NA non-coding upstream 121279 20859599 ~ 20859991 (-)
G125839 NA non-coding upstream 172250 20910570 ~ 20910806 (-)
G125845 NA non-coding upstream 214612 20952932 ~ 20953578 (-)
G125848 NA non-coding upstream 235912 20974232 ~ 20976915 (-)
G125620 col4a2 other downstream 267365 20464109 ~ 20467185 (-)
G125619 col4a2 other downstream 272921 20459162 ~ 20461629 (-)
si:ch211-214p13.7 NA other downstream 810815 19921268 ~ 19923735 (-)
LOC120570223 NA other downstream 938330 19790052 ~ 19796220 (-)
si:ch211-214p13.3 NA other downstream 965964 19751701 ~ 19768586 (-)
G125842 NA other upstream 215341 20953661 ~ 20960064 (-)
LOC120569741 LOC104951940,LOC103391685,LOC103352881 other upstream 240681 20979001 ~ 20986633 (-)
tmtops2b LOC100693281,LOC102294429,LOC102792754,LOC101463828,LOC102207603,LOC103352886 other upstream 372867 21111187 ~ 21149005 (-)
ecrg4a Augurin-B,LOC103352889 other upstream 454588 21192908 ~ 21198088 (-)
c12h2orf49 NA other upstream 538602 21276922 ~ 21279859 (-)

Expression


Co-expression Network