LOC120569741 (LOC104951940,LOC103391685,LOC103352881)


Basic Information

Item Value
gene id LOC120569741
gene name LOC104951940,LOC103391685,LOC103352881
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20979001 ~ 20986633 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169270
GACAGTTCTGCGGGTCTGGGATTGTCTTTTCTACGAGGGCTCCAAAGTTCTTTTCCGTGTTGCTCTGACTCTCATCATTCACCACCAGCCGGAAATCCTGCGAGCTCGCTCTTTGACTGATGTGTGCGAGTGCTTTAAACAAATTTCCTGTGGAGCTTTTACTCTGGACTGCCACACCTTCATGCAGAAAATCTTCACAGAACCTGGCAGCCTGTCGATGGCAACTATTGATAAACTCAGAGAGAAATGCAGACAACGAATACTGGAGGAAGAATCTGGACGGCCATAAAGTTTTGGATCCACCATTTATGCCCGTCTAAATGGATTTCTAAAACTAACAGCTTTAATTCAGTGTTAAAGAATAACACTGGAACAAATAACTACCGGTATTACCGAATGGACTTCTGGTGGCTTTTTGTTTTGCTTCTGTTTTAAGTTTTCTATAAAGGAGAACCTTGTCCTTTGCAAATGGTCCCATGTTCTGCAGAATATTTCTACTTTAAGTGTGATCATCAGAAGTGATGCTTTGTAAAAATCCTTTTTGCACTACAGTATACGTTGTAGCACTGTGGGACTGATGCAATTATGTTTGTTATTCTGGAGAAAAATACTTACAGAGAATgtggtctcgcattgccagacatatctcaacagcactgtggagtaagtCTGGCTCCTCCACACATACGTTGCAGGATAGGGgaaatgcatttctttaaaccaatcacaatcgtcttgggcggcgctaagctccggtcGCAGAGACAGTGACGCTACAAAAtggtctctggaaggaacttgtttgggtgGAACATTTGGACCCCgaataaagaaaatgccacatataatataaaattaagttaactgttcacacaattcagtaacgtgagctatttaaattagctggattcatggttaaacataatttgctcttaccagtcaGTGTATTGCCCTGTGTTACTCCATCCACAGCAATCCTGCCTTTCtttgtaaatatttaaaatcattCCCGAAAGAACctagcaggcctgccttgttgcatgatccaaattttattcaaaacatgccattttcagtgtg
>XM_039817779.1
AGGTACAGTattggatgatgatgatgaattgGTCAGGATGTCTGTAGTATTATAAAGTTAACACATTCATTCCACATCCTACTCCATATTACAAGGCAGGTCACGTgagtaaaataatatttatgCCACTATGTATCTGCATGCTGTGCCATCTTTCTAAAAAGATCACAACTACTAGCCAacataaatgtttattttgtacataaaagttttattttaggGGGTTTAGGAGGTAAGACACCATTCATGGAACACAAAATCCACAGTTCAAatcctttgtttttgtcactagTTTCCTTAAAACTTTTACAATAAACTATTAAATAAATGCATGAAAAAAGGTCCAGAAATACTTAAAGCTGATTTTATAACATTTATGTAGTATACCATTGAGAATGACCAAAAAAAAGGGGAGAACTCCAGCTGTAGCTGTAGCTACCATTTAAGGATAGGTTCATGTTTTTCAAAACTGGTCAGGTGCCCAAGGCCTGTAGATTTAGTCTCCCATTGCTTCCATTGGCAGCACCTTAGGAAGAGATCTTTCAATGGCCAGTATGAACAGGAGGACTAATGACAGCGAGCTAAACCTGTTTCAGTGTACATATGTGCACTTTACTGTTCTCAAAGACAAACATGAAAAATGTGGCCATATCCTTTAAGGACGATAATGGCATGTCCTCAGTATCGTTTCTGGGAATTTGGTTGATGTAACAATCTAAGAATTAGTTTATATTCTACAACTTGGGGCAAAAGGGCAAAAATTAAACCAGCATTAACTGATTTTGGGCCACTCGTGGGCAGCGAAAACATCAATATAAAGATATGGATTATAATCccttttaaaacacattaaaataagACTAGTAAAAGGGATTTAGTTTTCTTTATGATAATATTCCTGACAGTGTGGAGACAGCTTTGGAATACTATTGAGATCATGTAGATGagaaattatatatttaaacagTCTAAACAATATACTCTCTTGGTAGTCAGTTAAATATTTCTTAAGGAACATTAAAGTGAGGGTAATTGGACTTTGGATTTCTAAAATCCTGTCTCCAATCCTGGAATTAATGCTTTACCATTTACAGGGAATGGGGAAACCTTTATTTTGTTAAGAGTGATATGCAAAAAGGCATAAAAGCATCCAATTGTTTTCCATGCAAATAAAGCACATACCTGTGGTTGTTACCTGAGTGTTATGTAGTCTAGCCCCTCCTCTCAGTGAAAACTCTAAGGTGAGTCATTGGAAACTCAGACCGCTTTATTTACTTACCTTGACAGCAGCTCTTTTCCAAGGAATAGAAATGAAATAGGTGCCTCTGTGCAGGTGGTTTACAACCTTGGTGGACTACTTTACCTGCAGCAAATGACACACAAtggaaatgaaaggaaatgctTCTCAACCTCTTACATGTAATAATGGCAGTGAAAGCAGGATTGACCCCTATGGCTTTGAGAGACGTCATGATTTTGAATCCTACAAGGAGATGATGAATGAGTatgtagctgtcctcaacagAAGGTCGATGAGATGGTCCAAGCTCCTTCAAGAGAAACCACACGTGGAGAAGAACTTGACAGTGAAAAGGTATGTGCGTAAAGGTGTGCCTAACGAGCACCGTGCCAGGATTTGGATGGCAGCCAGTGGCGGACAGGAACGACTGGAGAGCAACCCAGGTTATTACCAGTCTCTGCTGGCCATGGAGCATGACACCAAGTTGAAGGAAACCATCCATACAGACATGCATAGGACCTTTCCTGACAACGTCCTCTTCCAGAGCAAAGCAGAACCGAGCCTGCAGAGGGCTCTGTACAATGTGCTGCTTGCCTACGGACAACATAATAAGGAAGTTGGGTACTGTCAGGGCATGAACTTTATTGCAGGCTACCTCATGATCATCACCAAAGATGAAGAGAACTCCTTCTGGCTCATGGATGCATTGTTGGGCAGAATGCTCCCAGACTTCTACAGTCCAGCCATGATGGGCCTGAAGACTGACCAGGAGGTTCTTGGGGAGCTGGTGAAGGCTAAAGCTCCTGCAGTAGGACAGCTCATGGCCCAGTATCCTGGCATATGGACACTGGTGGTGTCACGCTGGTTCATCTGCCTCTACATTGACATACTCCCAATTGAGACAGTTCTGCGGGTCTGGGATTGTCTTTTCTACGAGGGCTCCAAAGTTCTTTTCCGTGTTGCTCTGACTCTCATCATTCACCACCAGCCGGAAATCCTGCGAGCTCGCTCTTTGACTGATGTGTGCGAGTGCTTTAAACAAATTTCCTGTGGAGCTTTTACTCTGGACTGCCACACCTTCATGCAGAAAATCTTCACAGAACCTGGCAGCCTGTCGATGGCAACTATTGATAAACTCAGAGAGAAATGCAGACAACGAATACTGGAGGAAGAATCTGGACGGCCATAAAGTTTTGGATCCACCATTTATGCCCGTCTAAATGGATTTCTAAAACTAACAGCTTTAATTCAGTGTTAAAGAATAACACTGGAACAAATAACTACCGGTATTACCGAATGGACTTCTGGTGGCTTTTTGTTTTGCTTCTGTTTTAAGTTTTCTATAAAGGAGAACCTTGTCCTTTGCAAATGGTCCCATGTTCTGCAGAATATTTCTACTTTAAGTGTGATCATCAGAAGTGATGCTTTGTAAAAATCCTTTTTGCACTACAGTATACGTTGTAGCACTGTGGGACTGATGCAATTATGTTTGTTATTCTGGAGAAAAATACTTACAGAGAATgtggtctcgcattgccagacatatctcaacagcactgtggagtaagtCTGGCTCCTCCACACATACGTTGCAGGATAGGGgaaatgcatttctttaaaccaatcacaatcgtcttgggcggcgctaagctccggtcGCAGAGACAGTGACGCTACAAAAtggtctctggaaggaacttgtttgggtgGAACATTTGGACCCCgaataaagaaaatgccacatataatataaaattaagttaactgttcacacaattcagtaacgtgagctatttaaattagctggattcatggttaaacataatttgctcttaccagtcaGTGTATTGCCCTGTGTTACTCCATCCACAGCAATCCTGCCTTTCtttgtaaatatttaaaatcattCCCGAAAGAACctagcaggcctgccttgttgcatgatccaaattttatt
>XM_039817780.1
AGGTACAGTattggatgatgatgatgaattgGTCAGGATGTCTGTAGTATTATAAAGTTAACACATTCATTCCACATCCTACTCCATATTACAAGGCAGGTCACGTgagtaaaataatatttatgCCACTATGTATCTGCATGCTGTGCCATCTTTCTAAAAAGATCACAACTACTAGCCAacataaatgtttattttgtacataaaagttttattttaggGGGTTTAGGAGGTAAGACACCATTCATGGAACACAAAATCCACAGTTCAAatcctttgtttttgtcactagTTTCCTTAAAACTTTTACAATAAACTATTAAATAAATGCATGAAAAAAGGTCCAGAAATACTTAAAGCTGATTTTATAACATTTATGTAGTATACCATTGAGAATGACCAAAAAAAAGGGGAGAACTCCAGCTGTAGCTGTAGCTACCATTTAAGGATAGGTTCATGTTTTTCAAAACTGGTCAGGTGCCCAAGGCCTGTAGATTTAGTCTCCCATTGCTTCCATTGGCAGCACCTTAGGAAGAGATCTTTCAATGGCCAGTATGAACAGGAGGACTAATGACAGCGAGCTAAACCTGTTTCAGTGTACATATGTGCACTTTACTGTTCTCAAAGACAAACATGAAAAATGTGGCCATATCCTTTAAGGACGATAATGGCATGTCCTCAGTATCGTTTCTGGGAATTTGGTTGATGTAACAATCTAAGAATTAGTTTATATTCTACAACTTGGGGCAAAAGGGCAAAAATTAAACCAGCATTAACTGATTTTGGGCCACTCGTGGGCAGCGAAAACATCAATATAAAGATATGGATTATAATCccttttaaaacacattaaaataagACTAGTAAAAGGGATTTAGTTTTCTTTATGATAATATTCCTGACAGTGTGGAGACAGCTTTGGAATACTATTGAGATCATGTAGATGagaaattatatatttaaacagTCTAAACAATATACTCTCTTGGTAGTCAGTTAAATATTTCTTAAGGAACATTAAAGTGAGGGTAATTGGACTTTGGATTTCTAAAATCCTGTCTCCAATCCTGGAATTAATGCTTTACCATTTACAGGGAATGGGGAAACCTTTATTTTGTTAAGAGTGATATGCAAAAAGGCATAAAAGCATCCAATTGTTTTCCATGCAAATAAAGCACATACCTGTGGTTGTTACCTGAGTGTTATGTAGTCTAGCCCCTCCTCTCAGTGAAAACTCTAAGGTGAGTCATTGGAAACTCAGACCGCTTTATTTACTTACCTTGACAGCAGCTCTTTTCCAAGGAATAGAAATGAAATAGGTGCCTCTGTGCAGGTGGTTTACAACCTTGGTGGACTACTTTACCTGCAGCAAATGACACACAAtggaaatgaaaggaaatgctTCTCAACCTCTTACATGTAATAATGGCAGTGAAAGGATTGACCCCTATGGCTTTGAGAGACGTCATGATTTTGAATCCTACAAGGAGATGATGAATGAGTatgtagctgtcctcaacagAAGGTCGATGAGATGGTCCAAGCTCCTTCAAGAGAAACCACACGTGGAGAAGAACTTGACAGTGAAAAGGTATGTGCGTAAAGGTGTGCCTAACGAGCACCGTGCCAGGATTTGGATGGCAGCCAGTGGCGGACAGGAACGACTGGAGAGCAACCCAGGTTATTACCAGTCTCTGCTGGCCATGGAGCATGACACCAAGTTGAAGGAAACCATCCATACAGACATGCATAGGACCTTTCCTGACAACGTCCTCTTCCAGAGCAAAGCAGAACCGAGCCTGCAGAGGGCTCTGTACAATGTGCTGCTTGCCTACGGACAACATAATAAGGAAGTTGGGTACTGTCAGGGCATGAACTTTATTGCAGGCTACCTCATGATCATCACCAAAGATGAAGAGAACTCCTTCTGGCTCATGGATGCATTGTTGGGCAGAATGCTCCCAGACTTCTACAGTCCAGCCATGATGGGCCTGAAGACTGACCAGGAGGTTCTTGGGGAGCTGGTGAAGGCTAAAGCTCCTGCAGTAGGACAGCTCATGGCCCAGTATCCTGGCATATGGACACTGGTGGTGTCACGCTGGTTCATCTGCCTCTACATTGACATACTCCCAATTGAGACAGTTCTGCGGGTCTGGGATTGTCTTTTCTACGAGGGCTCCAAAGTTCTTTTCCGTGTTGCTCTGACTCTCATCATTCACCACCAGCCGGAAATCCTGCGAGCTCGCTCTTTGACTGATGTGTGCGAGTGCTTTAAACAAATTTCCTGTGGAGCTTTTACTCTGGACTGCCACACCTTCATGCAGAAAATCTTCACAGAACCTGGCAGCCTGTCGATGGCAACTATTGATAAACTCAGAGAGAAATGCAGACAACGAATACTGGAGGAAGAATCTGGACGGCCATAAAGTTTTGGATCCACCATTTATGCCCGTCTAAATGGATTTCTAAAACTAACAGCTTTAATTCAGTGTTAAAGAATAACACTGGAACAAATAACTACCGGTATTACCGAATGGACTTCTGGTGGCTTTTTGTTTTGCTTCTGTTTTAAGTTTTCTATAAAGGAGAACCTTGTCCTTTGCAAATGGTCCCATGTTCTGCAGAATATTTCTACTTTAAGTGTGATCATCAGAAGTGATGCTTTGTAAAAATCCTTTTTGCACTACAGTATACGTTGTAGCACTGTGGGACTGATGCAATTATGTTTGTTATTCTGGAGAAAAATACTTACAGAGAATgtggtctcgcattgccagacatatctcaacagcactgtggagtaagtCTGGCTCCTCCACACATACGTTGCAGGATAGGGgaaatgcatttctttaaaccaatcacaatcgtcttgggcggcgctaagctccggtcGCAGAGACAGTGACGCTACAAAAtggtctctggaaggaacttgtttgggtgGAACATTTGGACCCCgaataaagaaaatgccacatataatataaaattaagttaactgttcacacaattcagtaacgtgagctatttaaattagctggattcatggttaaacataatttgctcttaccagtcaGTGTATTGCCCTGTGTTACTCCATCCACAGCAATCCTGCCTTTCtttgtaaatatttaaaatcattCCCGAAAGAACctagcaggcctgccttgttgcatgatccaaattttatt

Function

NR:

description
PREDICTED: growth hormone-regulated TBC protein 1-A-like

GO:      GO:0005097,GO:0032851

KEGG:

id description
K19953 GRTP1, TBC1D6, MSB3_4; TBC1 domain family member 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU169270 False 1080 lncRNA 0.41 2 20979001 20980656
XM_039817779.1 True 3197 mRNA 0.41 8 20979024 20986633
XM_039817780.1 False 3194 mRNA 0.41 8 20979024 20986633

Neighbor

gene id symbol gene type direction distance location
LOC120569994 NA coding downstream 11365 20960073 ~ 20967636 (-)
gpa33b NA coding downstream 45623 20927503 ~ 20933378 (-)
ildr2 ildr2 coding downstream 51677 20911765 ~ 20927324 (-)
ildr1b NA coding downstream 70847 20900974 ~ 20908154 (-)
me3 me3,LOC103391678,LOC107389821 coding downstream 79556 20885649 ~ 20899445 (-)
dcun1d2a LOC103352882,LOC103391684,LOC102206284,LOC101172367,LOC100692472 coding upstream 336 20986969 ~ 20992931 (-)
mettl21cb LOC103352902,LOC101487552,LOC100703915,LOC102310197 coding upstream 25978 21012611 ~ 21017468 (-)
LOC120569351 NA coding upstream 32953 21019586 ~ 21023880 (-)
otos2 NA coding upstream 213691 21200324 ~ 21201686 (-)
LOC120570262 nck2,LOC102794784 coding upstream 225248 21211881 ~ 21257422 (-)
G125848 NA non-coding downstream 2086 20974232 ~ 20976915 (-)
G125845 NA non-coding downstream 25423 20952932 ~ 20953578 (-)
G125839 NA non-coding downstream 68195 20910570 ~ 20910806 (-)
G125800 NA non-coding downstream 119010 20859599 ~ 20859991 (-)
G125784 NA non-coding downstream 219776 20757707 ~ 20759225 (-)
G125852 NA non-coding upstream 9859 20996492 ~ 20998787 (-)
G125855 tfdp1,LOC102791026 non-coding upstream 14676 21001309 ~ 21004378 (-)
G125905 NA non-coding upstream 222153 21208786 ~ 21209743 (-)
G125930 NA non-coding upstream 321260 21307893 ~ 21308995 (-)
G125977 NA non-coding upstream 422701 21409334 ~ 21409966 (-)
G125842 NA other downstream 18937 20953661 ~ 20960064 (-)
LOC120570047 dynlt3 other downstream 240681 20734550 ~ 20738320 (-)
G125620 col4a2 other downstream 511816 20464109 ~ 20467185 (-)
G125619 col4a2 other downstream 517372 20459162 ~ 20461629 (-)
si:ch211-214p13.7 NA other downstream 1055266 19921268 ~ 19923735 (-)
tmtops2b LOC100693281,LOC102294429,LOC102792754,LOC101463828,LOC102207603,LOC103352886 other upstream 124554 21111187 ~ 21149005 (-)
ecrg4a Augurin-B,LOC103352889 other upstream 206275 21192908 ~ 21198088 (-)
c12h2orf49 NA other upstream 290289 21276922 ~ 21279859 (-)
LOC120570342 LOC103140352,LOC107099897,LOC102227411,LOC105927538,LOC107389789,LOC103368131 other upstream 420273 21406906 ~ 21409042 (-)
cracdla NA other upstream 468579 21455212 ~ 21462797 (-)

Expression


Co-expression Network