c12h2orf49


Basic Information

Item Value
gene id c12h2orf49
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 21276922 ~ 21279859 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169358
TGGCGACTTCCACGGGGCAAGATGGAAAGACTGTCTGTACCTCGGATGTGGATCTATTACTGCACCCTGAGCTGTTGTCTCAAGAGTTTATGCAGCTGATATTAAGTGGGAAACATGTCAGTACAAGGGACTGTGAGAGTCGGGACCAGCTCACAGAGCTTTACCTCCGGCATGTCATCCCGCGGCCGCAGAGGACTTTACCCGACAGCCGCTGGGGCAAGAGGATGGAGAAGACCCGAGCGAGACAGACAGCGGCCGGTCACAGGGTGAAATTAAGTCTCCAGAGGTGAAGAAAAAGATCCAGCATGTGACATGGCCCTGACCTCAGACCGCTATTCACATAGACCTGATGTGAGCTCGGACAGATCGCTCCTTTCCCACCAAATGTTGTCCAGTATTTGTGCTCTTCCCCTCACAGTTATTGAACTAATTACATCACAAAATGGATGGAAACCCTTTTTACCTCTGTGTCCAGGCCACCTCACAGCTCTCGCTCAGTCCCGAGAGCTGACCTGATGGGGTGGTGCTCCGAAGGTCATCCAGCTTTTGAAGTCGCCAGCTTCCTTGTTGCTTTCCACAACCTCAAGTGCCCTTTCCATCGATGACCAGCAACTCTCCTCAAGTCTCACACGTGAACACCTTCTAGAGGACAAAACAAGTGACACttcttttgttttctgaaatgcTGTTTATGGGAATTATGGTTGTTGATGTTCTTGTTTCTGTGCACGAGTTGGTTTTGGTCAGAGGGCCTCCAGTACTGGCTTGCAAGGGTTAAAGGGTGATTTTCCTGCCAGGTTTTGTTTAACATTTTGTAATTGGTAGTACCATGACTTAAATAGACAGATTGtttttgacataaatgtcaTAGACTCTCATAGTTTGAGATTTTGACTGATGGACATATCTAATAAACATTGTGAACACGTTATGAGGTAGTGctaaaaaatatatgtttttctCTGGTGTACATTTCAAAGGAAACAAATCACAGATTATGCAGATAGAATTTTAgaaggtgtt
>XM_039817085.1
ATGCATGCcgggaaaacaataaaaatccaATATGGCGACTTCCACGGGGCAAGATGGAAAGACTGTCTGTACCTCGGATGTGGATCTATTACTGCACCCTGAGCTGTTGTCTCAAGAGTTTATGCAGCTGATATTAAGTGGGAAACATGTCAGTACAAGGGACTGTGAGAGTCGGGACCAGCTCACAGAGCTTTACCTCCGGCATGTCATCCCGCGGCCGCAGAGGACTTTACCCGACAGCCGCTGGGGCAAGAGGATGGAGAAGACCCGAGCGAGACAGACAGCGGCCGGTCACAGTTCCACTAACGACCACAATAGGAAAAGGCCTCTGATTGTGTTTGATGGCAGTGCCTCTCACTCTGGCCCACTAAAAGTAAAGAAACCAGAGGGAACTACTGTGTCAGCAGGAATCACTGACCGGTTAAAACCTCCTCCTGCTGCAAGCCTGTCCAACCCCATCCGCAAGCTATCTGGAAACACATCTTCCTCATCCATTCATTGCAGCACTGACACAGCGAGCCTCAAACGAGAAGCAAACCGCTCGGGTGAAATTAAGTCTCCAGAGGTGAAGAAAAAGATCCAGCATGTGACATGGCCCTGACCTCAGACCGCTATTCACATAGACCTGATGTGAGCTCGGACAGATCGCTCCTTTCCCACCAAATGTTGTCCAGTATTTGTGCTCTTCCCCTCACAGTTATTGAACTAATTACATCACAAAATGGATGGAAACCCTTTTTACCTCTGTGTCCAGGCCACCTCACAGCTCTCGCTCAGTCCCGAGAGCTGACCTGATGGGGTGGTGCTCCGAAGGTCATCCAGCTTTTGAAGTCGCCAGCTTCCTTGTTGCTTTCCACAACCTCAAGTGCCCTTTCCATCGATGACCAGCAACTCTCCTCAAGTCTCACACGTGAACACCTTCTAGAGGACAAAACAAGTGACACttcttttgttttctgaaatgcTGTTTATGGGAATTATGGTTGTTGATGTTCTTGTTTCTGTGCACGAGTTGGTTTTGGTCAGAGGGCCTCCAGTACTGGCTTGCAAGGGTTAAAGGGTGATTTTCCTGCCAGGTTTTGTTTAACATTTTGTAATTGGTAGTACCATGACTTAAATAGACAGATTGtttttgacataaatgtcaTAGACTCTCATAGTTTGAGATTTTGACTGATGGACATATCTAATAAACATTGTGAACACGTTA

Function

GO:

id name namespace
GO:0048598 embryonic morphogenesis biological_process
GO:0072669 tRNA-splicing ligase complex cellular_component

KEGG:

id description
K15432 ASW; ashwin

RNA

RNA id representative length rna type GC content exon number start site end site
TU169358 False 1023 lncRNA 0.46 3 21276922 21279827
XM_039817085.1 True 1210 mRNA 0.48 4 21277014 21279859

Neighbor

gene id symbol gene type direction distance location
LOC120570262 nck2,LOC102794784 coding downstream 19500 21211881 ~ 21257422 (-)
otos2 NA coding downstream 75236 21200324 ~ 21201686 (-)
LOC120569351 NA coding downstream 253042 21019586 ~ 21023880 (-)
mettl21cb LOC103352902,LOC101487552,LOC100703915,LOC102310197 coding downstream 259454 21012611 ~ 21017468 (-)
dcun1d2a LOC103352882,LOC103391684,LOC102206284,LOC101172367,LOC100692472 coding downstream 283991 20986969 ~ 20992931 (-)
gpr45 gpr45 coding upstream 2307 21282166 ~ 21287509 (-)
pou3f3a pou3f3,LOC102796644,LOC101467285 coding upstream 12052 21291911 ~ 21294468 (-)
tmem182a tmem182 coding upstream 57497 21337356 ~ 21342077 (-)
slc9a2 LOC103368135,LOC104961991,LOC101076248 coding upstream 74693 21354552 ~ 21368286 (-)
LOC120570339 NA coding upstream 111421 21391280 ~ 21392851 (-)
G125905 NA non-coding downstream 67179 21208786 ~ 21209743 (-)
G125855 tfdp1,LOC102791026 non-coding downstream 272544 21001309 ~ 21004378 (-)
G125852 NA non-coding downstream 278135 20996492 ~ 20998787 (-)
G125848 NA non-coding downstream 300007 20974232 ~ 20976915 (-)
G125845 NA non-coding downstream 323344 20952932 ~ 20953578 (-)
G125930 NA non-coding upstream 28034 21307893 ~ 21308995 (-)
G125977 NA non-coding upstream 129475 21409334 ~ 21409966 (-)
G126093 spryd7 non-coding upstream 511694 21791553 ~ 21818095 (-)
LOC120569376 NA non-coding upstream 525491 21805350 ~ 21818089 (-)
LOC120570345 NA non-coding upstream 562126 21841985 ~ 21849551 (-)
ecrg4a Augurin-B,LOC103352889 other downstream 78834 21192908 ~ 21198088 (-)
tmtops2b LOC100693281,LOC102294429,LOC102792754,LOC101463828,LOC102207603,LOC103352886 other downstream 127917 21111187 ~ 21149005 (-)
LOC120569741 LOC104951940,LOC103391685,LOC103352881 other downstream 290289 20979001 ~ 20986633 (-)
G125842 NA other downstream 316858 20953661 ~ 20960064 (-)
LOC120570047 dynlt3 other downstream 538602 20734550 ~ 20738320 (-)
LOC120570342 LOC103140352,LOC107099897,LOC102227411,LOC105927538,LOC107389789,LOC103368131 other upstream 127047 21406906 ~ 21409042 (-)
cracdla NA other upstream 175353 21455212 ~ 21462797 (-)
LOC120569718 LOC104941591 other upstream 950474 22230333 ~ 22234857 (-)
senp7 NA other upstream 1162353 22442212 ~ 22471922 (-)
si:dkey-100n23.5 LOC103357194,LOC107389748,LOC106527133,LOC108232487,LOC102079199,LOC107091445,LOC103391942,LOC106962244,LOC103134722,LOC104958636 other upstream 1251775 22531634 ~ 22582407 (-)

Expression


Co-expression Network