katnal1 (katnal1,LOC106527129,LOC104958633)


Basic Information

Item Value
gene id katnal1
gene name katnal1,LOC106527129,LOC104958633
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22615496 ~ 22629115 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169814
TTCTTCACACGGCGTCTCTCTGCGGCCATGGTAACACTTTCCTCAACACTGGACATCTGATtcaaaaatacaacacaaacaagTGCTTTTCATGCAGCTGTTATTCAGCATGAATTTGGCAGAGATTTGTGACAACGCCAAGAAGGGCCGTGAGTATGCTTTGCTGGGGAACTATGACTCCTCCATTGTGTACTACCAGGGCGTCATTCAGCAGATCCACAAGCACTGTCAGTCCCTCAGAGACCCTGCAATTAAAGTCAAATGGCAACAGGTCAGGCAGGAACTGACTGAGGAGTATGAGCAGGTGAAAGGCATCATGGGAACGCTCGAAAGCTTTAAGTCAGAGAGGCCAGTTGACATTCTTGCCCCTCAATTTGAGGAGAGACCTGAGGATCCAGCAGTATGGCCCCCTCCTACCCCTGCAgaacacaggaATCTAATTGCAGTGAAGCGCCCCAACAGTGCGGCGAGGCAGCATAGGAAGGACTCCCCTGGTCTGCAGCATCGAGGGGCAGGGCCAGGAGGCCGCGGTCAGGCCAACCCTAAACCAGACCGGCCGGGTTTGAGAGACGCCCGAGGCACAAAGGCCAAAGATGATAAGGGGAAGAAAGTTGGTGGAGAAGCGGATGTAGAGCAGAGGAAGTTTGATGGCACGGGATATGACAGCGACC
>XM_039817196.1
AATCGAGCCGCCTGTATTCTTCACACGGCGTCTCTCTGCGGCCATGGTAACACTTTCCTCAACACTGGACATCTGATtcaaaaatacaacacaaacaagTGCTTTTCATGCAGCTGTTATTCAGCATGAATTTGGCAGAGATTTGTGACAACGCCAAGAAGGGCCGTGAGTATGCTTTGCTGGGGAACTATGACTCCTCCATTGTGTACTACCAGGGCGTCATTCAGCAGATCCACAAGCACTGTCAGTCCCTCAGAGACCCTGCAATTAAAGTCAAATGGCAACAGGTCAGGCAGGAACTGACTGAGGAGTATGAGCAGGTGAAAGGCATCATGGGAACGCTCGAAAGCTTTAAGTCAGAGAGGCCAGTTGACATTCTTGCCCCTCAATTTGAGGAGAGACCTGAGGATCCAGCAGTATGGCCCCCTCCTACCCCTGCAgaacacaggaATCTAATTGCAGTGAAGCGCCCCAACAGTGCGGCGAGGCAGCATAGGAAGGACTCCCCTGGTCTGCAGCATCGAGGGGCAGGGCCAGGAGGCCGCGGTCAGGCCAACCCTAAACCAGACCGGCCGGGTTTGAGAGACGCCCGAGGCACAAAGGCCAAAGATGATAAGGGGAAGAAAGTTGGTGGAGAAGCGGATGTAGAGCAGAGGAAGTTTGATGGCACGGGATATGACAGCGACttattttgctGTCGGGAAGTTTCTTTTGTTAGCACTGCTGACTGAGTTCTCTGGATGAACTGTAGGGACGACATTGCTGATCTGGAAGATGCTAAGAAGCTGCTGAGAGAAGCGGTGGTGTTGCCCATGTGGATGCCAGACTTCTTTAAGGGCATTCGTCGCCCCTggaagGGCGTGTTAATGGTCGGCCCTCCCGGGACAGGGAAGACCATGTTAGCCAAAGCTGTGGCCACAGAATGTGGGACTACTTTCTTCAATGTGTCCTCCTCCACCCTCACCTCCAAATACAGGGGCGAGTCCGAAAAACTTGTTCGTCTGCTGTTCGAAATGGCTCGCTTTTATGCACCAACAACCATCTTCATAGACGAGATTGACTCCATCTGCGGCAGAAGAGGAACATCTGATGAACACGAAGCCAGCCGCAGGGTCAAATCAGAACTTCTGGTTCAGATGGATGGTGTCGGGGGGGCTCTGGATAATGATGACCCCTCTAAGATGGTGATGGTCCTAGCCGCCACCAACTTCCCCTGGGACATCGACGAGGCGTTACGACGACGGCTAGAAAAGCGGATCTACATATCCCTGCCCACAGctaTTGGTCGTGTAGAGCTTCTAAAGATCAACCTGAGGGAGGTGGAGTTGGCTGAAGATGTGGACCTGGACTTCATTGCTGAGAAAATCGAAGGCTACTCTGGAGCGGACATCACCAAcgtctgcagGGATGCGTCCATGATGGCAATGCGTCGTCGAATCCAAGGCCTAAGCCCCGAGGAGATACGAGCTCTGTCCAAAGACGAACTGCAGATGCCTGTGACCATGGAGGACTTCACCCTGACACTCAAGAAGATCTCAAAGTCTGTCTCTTCTGCAGACCTGGAGAAATACGTAGCCTGGATGGCTGAGTTTGGGTCAGTATAGAGAACGGTACCATTTAGACCCAGAGGGACCAGGACTTTAAAAGTGATGAAAGCCTTGAAGACAAGGGACTAAGGAGTGTGTGTCACGGAGTGGAGTGAACTCTAGTGTTTGAACCAGGCAGCACATCAGGGATCAAGATTATACAGGGGCTCAAGTTCCCATCAGAAGACTGGTGCCTTAGAGAAAGCACTCCTGCCCTTGCGCATACTGTCCCCTCGTTGTTGCTTCAGCACAATTGTCCATGTAGAGACTATCAATTGCCCAGCTGCTGACTGACTTAAGTGACCTGAGAAAGAAAGGGGGAACTTTTAATGTAAAAAGTAGCCTATTAGATACAGGTAGACCAGGAAATGCACTCTAGTTTTATTACGTTAGCTTGTTATACAAGTGTTCCACATCCACTTCACCAAATAAGCTTTGCTCGTAAATTATCCGTTTCAACCTGATGAATGCCAACTGTTTACAAGTAGGTTAGCGTTAATCCATGCCCCTAAAATTGCTATAAAAGAGTCCCTGTTTCTGGGTTTCAAGTTTCATTGAAAATTCCAAAGATTAAAAAGAATTTCACACCGCTGAGCTTCATATCCTGCTGTCAGAAATCAGCAGTCGAAAACATAACAAGTTTAGCAGTCAAAGTCGTGTTAAGAGACctgaaatgataaaaaaaaatgtaaatacagcTGCAACAACAGAGGATGTTCACAGGGAAAGCGTCCTGCTTAAAAACCTTAAGGCAGATGTCACCAAACAGATACTGAATCGTTAGGTTGACATGCCAATATACTGTATGCCAGTAAAACCTGCAGTGATGGTCATGATCATTCAGATGAAGGTATTCTAATTTAGATTTCTGGCAAATGCAAGAAGTTTCCTTAAATCACTTGCATGTGCCACAGAACAAATCTGTCAGTACTTTGGATTCTTGCACGAGGCCCTTTCTCTTAAAGAACTGTATGTTTGAgcacttttaatgtttttccttGAGGATGTGCGTACTACTGACTGAACCCACTTGAAGAACCACAATGTCTTGTGTTTTATGTAGCGACTAAttatgtgtttgtattttgtttgttggttttaatttgtttttaattttagttcagtggagaaaaacaaatgtaggcAAGCTAAAAGAACATGGCTCCTGGACCCATGAATATTTTATTAAAGCATACCGTCAATTCTTGCCTAAAATCTTGCCTACTTAATGgttctttttaataaaattacTAAATTGATCACCCAAAAGTGAGTGAGGTTTTTAACTATCTTGTTAATCGCATTTTCAAAGCAAACAAAAAATGATTCCATGATGCTGAAGCTATtgagagatagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaataaataaaaatatagtatGGAAGTAAATTCTTGGAAATAGTTGCTTGACCAAAAACAATCCCAACTGAAGGCCCAGCTTTTTCCAGAGCTTTTAACCGTGTCACGCCGTCTTCGTCCGCAGATTGAGTTTGCtctgttgtcatggagatggatCTGTTGACATCTGAGTTTAGAATGAACTCAGCACTGTGAACAAGAAATCTTAAAGGTGCTATGGATGACATCATAATCACTACATCTCTAACAACTGAACCATCTCCATTTAAGACTTTGTGACAGGGTTAAAAGCGCAGTAAAAGCTTGTAAATTGACTATGAGTTGCgattattttgtcaaactaTTATTGTTTTGATATATTAAACCTGTGATGTGAGCTACAAGATTAGAAAAACTTGATACTCGCAAAATAATTGATTCTTGACAGTATGATCAGTACTTTGGCTATAAAGTAATTTAGAGATTTGCTCATGTTTTTCGATCTGTAGCAGCTGTGTAGCAAAAACATTAAGCAGTGACATTGTATAAAacaatgtgtatatatgtttgtgtatttttgagATGAATGAAACAGTAGTGTATGTACATCAGCCTGTTGTATCATCCTGACAGGCTGTGCCCTGTTTTATCAGAATACACTGTACACCTTTTACTATTGGATGTCATTGTTAAGATTTTGTGAGATGCACTCTTTTAcatatcacattttttttttttttttccgtctTTTTAttcaaagcaacttacaattgctatatatcagacgtcacacgcctctggagcaactaggggttaagtgtcttgctcaaggacacgtTTGTTGATGTATCGCaatgggaatcgaacccggatctcccgcaccaaaggcacgtgtcatatccactgcacggTGCCATCACCACCCTCTGATGTTGCTTTGTTGTTTTCGTTTCTTCAGCAGCACTCAAACACTTTCTAGGTCAACAGAAGTGCTTTTCCCCTGCTTATTACTTTTCAAATGTAGGACAAATTATACAGAGCACTTGTCTATGTGCTGGTTCTCAAATTGTTAACCCCTCTTGATGATTTGTCCTTTTGATGAATCCAAAACGGATTTTACTGCAGGACAAGCAGTCCAGTGTACCCCCTAATTGCACTGCATTGTATTGTAAGGCTGTTATAAAATATTGGTTTTACTGTTTTGAAAGCTAAACATGTTCCAAAACCCCTAAATGAAAACGGATTTGTCCCCATAATACAACACACCTTAAGTTGAGCTCTTCAGTCTGTTATCTGTATCCCCATAAAGCCTTTAATCAGTTTGCCGTGTGattaaacattttttcttta

Function

symbol description
katnal1 Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Predicted to be involved in cytoplasmic microtubule organization and microtubule severing. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm; microtubule; and spindle pole. Predicted to be active in microtubule cytoskeleton and nucleus. Is expressed in nervous system and yolk syncytial layer. Orthologous to human KATNAL1 (katanin catalytic subunit A1 like 1).

NR:

description
katanin p60 ATPase-containing subunit A-like 1

GO: NA

KEGG:

id description
K07767 KATNA1; katanin p60 ATPase-containing subunit A1

RNA

RNA id representative length rna type GC content exon number start site end site
TU169814 False 671 TUCP 0.53 5 22625181 22629099
XM_039817196.1 True 4327 mRNA 0.43 11 22615496 22629115

Neighbor

gene id symbol gene type direction distance location
tspan7b tspan7 coding downstream 273 22593022 ~ 22615223 (-)
LOC120570617 NA coding downstream 28605 22584890 ~ 22586891 (-)
bcor bcor coding downstream 88132 22493642 ~ 22527364 (-)
atp6ap2 atp6ap2,renr coding downstream 125082 22481950 ~ 22490414 (-)
impg2a impg2 coding downstream 175503 22410048 ~ 22439993 (-)
zgc:101559 LOC100710420,LOC104958630,LOC102797725,LOC103357227,LOC101463598 coding upstream 578 22629693 ~ 22632693 (-)
kbtbd7 kbtbd7,LOC102797434 coding upstream 5450 22634565 ~ 22638245 (-)
wu:fc50b12 LOC106098708,LOC104958628,LOC108232414,LOC105941296 coding upstream 10390 22639505 ~ 22641075 (-)
slain1a slain1 coding upstream 12026 22641141 ~ 22654985 (-)
cln5 cln5,LOC102794031 coding upstream 111538 22740653 ~ 22743701 (-)
LOC120569264 NA non-coding downstream 135181 22478563 ~ 22480315 (-)
G126212 NA non-coding downstream 227327 22387712 ~ 22388169 (-)
G126211 NA non-coding downstream 228714 22386295 ~ 22386782 (-)
G126208 NA non-coding downstream 232124 22382648 ~ 22383372 (-)
G126188 NA non-coding downstream 265437 22251931 ~ 22350059 (-)
G126334 mycbp2 non-coding upstream 94011 22723126 ~ 22723591 (-)
G126341 fbxl3 non-coding upstream 104453 22733568 ~ 22737837 (-)
G126353 NA non-coding upstream 141597 22770712 ~ 22770920 (-)
G126486 itgbl1 non-coding upstream 882427 23511542 ~ 23518025 (-)
G126489 itgbl1,LOC102787049 non-coding upstream 904580 23533695 ~ 23535597 (-)
si:dkey-100n23.5 LOC103357194,LOC107389748,LOC106527133,LOC108232487,LOC102079199,LOC107091445,LOC103391942,LOC106962244,LOC103134722,LOC104958636 other downstream 33089 22531634 ~ 22582407 (-)
senp7 NA other downstream 143574 22442212 ~ 22471922 (-)
LOC120569718 LOC104941591 other downstream 380639 22230333 ~ 22234857 (-)
cracdla NA other downstream 1152699 21455212 ~ 21462797 (-)
LOC120570342 LOC103140352,LOC107099897,LOC102227411,LOC105927538,LOC107389789,LOC103368131 other downstream 1206454 21406906 ~ 21409042 (-)
scel scel other upstream 26464 22655579 ~ 22665472 (-)
klf5b LOC104962226,LOC103357491 other upstream 333084 22962199 ~ 22967901 (-)
gpr18 gpr18 other upstream 480918 23110033 ~ 23123908 (-)
si:ch211-218d20.15 LOC104960513,LOC101470276,LOC102197480,LOC102292608,LOC107099189,LOC100692635 other upstream 1325731 23954846 ~ 23957206 (-)
cnga4 cnga4,LOC103356095 other upstream 2042107 24671222 ~ 24679011 (-)

Expression


Co-expression Network