XLOC_004748


Basic Information

Item Value
gene id XLOC_004748
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26589644 ~ 26593298 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010942
acacattttatgaTAAAATTCATACATTATCATTTTGCAATCTGTACATTGCAAGAAACTGCATCAAActtcaaaaatgaaataaaaaagaaatgaaaaggaCAGTCTGATCAAGACTATTCATTTCCAGAACACTTAGCTTAACAATCTCCATAGCCTAGTGACATATTTGACACTTTACATCAATACTGTTGACAATACACCCAAAACATCTGATGAAAGAGCAGGTTTCAGCACGTTAAAAtgtatgtgtactgtatattAAAGCATGCAGGTGTTGTAGACTAACTATTATGGcagaaaataaacaacaactgtTAAAAATGGACCTTGTTTTTAGCTTTAATCTGAAGACGTTACGACAGAGGTCTGCACTTTTGGCCAGCTTGAAAGCTATATTTTTATCGAATACATGGGGTGTTGTGTAAGCATATTTTCCCTCAGCAAACAAGTTTTTCCAGTAATACTGAATTTGATTTTATTGATTTCTTCCAAACAGTTAAAACAGGGCCAGATTTTATGATATCGATATACCATCTGTCAACTGTCCATGCACCGGATCACCTTTATAATATGACAACATCCCAgcatataacattatatatactTAACACATTTCGCATGCTTCCGAGTTGGCATTCCAAACCACCAACTTCATCGTTTTTCTgaacaccatatatatatatatatagatctttTCACGaagaaaatatctttttttttttttaaatccatataTCATTTTCATTAGATCCTAAACCACACGAAACCTAAAGAAGAATGGCGTATTTCTAAAAGTATAAGGAGACAAACTAAATTCCCACAGTCTCACGTGCTGGAAAGCATCAGCAGTCAATGTGACGTCCGTATCAGTTTCCTAAACCGTCTTATATAAAACTTGAGACTGCGCATGGCTTTTTCGTTTGCCTCACATGGGGTTTGACTCTAAAAATAGAACAAACACAGTGTGAATTACAATGCAGGTAGGCGCAAACTTAAAAGTGCTTAGGGGCAGGAGTGGAAAAGCGAAATAGGGATGAACCACTGAAAACAAGAACAATAACAATCTCAGGGGGAAACGGGCACATTCAGTATCTGTGTCAAGGAACAGAACTGATTTAGTCAAAACAAGTATTTCTCAACCGTCTGTATTCATAAAAGAGTAATCTAGGAGCGAAGACACGTACAGTAGGGCACGACGGGTCAAAGGCACAACACCAGACAAACAAATTGGGACGGAGAGAGAGACTTTAACGCTGCCACCTGGAACTAATTCCAATATTCTGCGTTGGAAGTGGACCTGAAAGCTATCTGAACAAAGGGAAAGTACAAACAGGATCCTGTGAGAGGGCCAAGGTCCCATTACAGGAGCTTCGGTGACTAATAAGTGGGCTTGAACAAATAAACTCTCTCCaggagggggaaaacattaacacaaACAAAGAAACAGAAAAGCCAACGACCATTTAAACAGATTATACTGTAGCTCACAAACTCAAGTACATCGTCTTCTTGATATGATCAACTAAAGGACGTGAGTTTAATGCGATAAAGAGAGGAACAGACAACACTTTGAAACACTGCGGACCATAAAAACGTCCATTTACATGATGCCATCTTAGACTGACCCCTAGATTCAACAACAGTTTATAAACAGATATGAATAATCAAAATAGAGCCTGGATTACCGTTCAAATACTGACAATTCGCAATGTAGTCACAGTAGATTCAGAGAAACCACAAcgaatttatcaaaaataaacacaaattaaagggaaagttcacctcTAAAATGAAACTCACGTCGCAAAAAACAAAACGTCTGAATACAAGAAAATTGACCAtcgaaacacaaatgaagattttttttctaaccTGAGAAATTTTTGTCTCTCGATTGAAAATCCTCTCACAAAACTTCAAAAGGTTTATAGATATttcaaaaaaatcaatcaatgcTTGATTCACTTTATTCTGAAGAGATATAATGACTTTATTTGATGAAGAttgaattttatttacatattaacatTGATTATTAATGAATGTTTCCAGAATTCACCTTTTAGGAAGCTTGCCTGATGCTTGAGAACCAATCAGGTTCAATCTTCAGTCGTGGTTTATTCAAGGATCTTAAAAAAAGATGAGATTTACATCAAGCGGGTACAGTTTAGCTTCTGTTTATGTTTGCTGTTCAATATAAAAACGTAAATGAAAGCCTATTTAATATTTGATTATCAAATAAGTGACTGTGTGCATCTATTCAAATCAACTGGTTGATTTAATACCTAGTTTTATGTTTTAATCAACAAATAAACTTTCATTTGCATTTGATAAAAATTTCTCTTATTGAAAAAtacttcatttgtgtttttaagaTGAAGTCTTATGGAATATTTTCATTTTGAGGCGAACCAACTCTTTAAACAACGAGGGCAACCAAAGCCTTCAAAGATGAGGCTTCAATGTTAAAcatatcagataaaaaaaaagtcaagaacGTTCCACAACAAATGCAGCCCTTTACATTCATAAACATTCTGCTGATGTTATCAGACTTTGTTTAAACCAAAAACAGaaaatttaaacatttcaatagcCAAACTGTTATGGGGAGAGCTATATCTGAATTTAAACTTGTCAgacaagtgcaaaaaaaaaaaaaaaaaaagatgcaacaAAGAGCCACTAATGCAGTTTTGCCCTGACTCAAAACTTGAGGCCACTTTGTCCATCAACAGTCTCCCGAAGCACCTGGACTATGATACCGCTAACACTAGAAGCCTCCTGCTTATTTCCAGTCATCGACAAAGAGTTCAAAGGTAAAACAAACCATTTCACATGTTGGCAACCAggctttaaagaaagaaaaaaaagatcttCAAGGTTCGATTTAGAACCTCCC
>TCONS_00010941
acacattttatgaTAAAATTCATACATTATCATTTTGCAATCTGTACATTGCAAGAAACTGCATCAAActtcaaaaatgaaataaaaaagaaatgaaaaggaCAGTCTGATCAAGACTATTCATTTCCAGAACACTTAGCTTAACAATCTCCATAGCCTAGTGACATATTTGACACTTTACATCAATACTGTTGACAATACACCCAAAACATCTGATGAAAGAGCAGGTTTCAGCACGTTAAAAtgtatgtgtactgtatattAAAGCATGCAGGTGTTGTAGACTAACTATTATGGcagaaaataaacaacaactgtTAAAAATGGACCTTGTTTTTAGCTTTAATCTGAAGACGTTACGACAGAGGTCTGCACTTTTGGCCAGCTTGAAAGCTATATTTTTATCGAATACATGGGGTGTTGTGTAAGCATATTTTCCCTCAGCAAACAAGTTTTTCCAGTAATACTGAATTTGATTTTATTGATTTCTTCCAAACAGTTAAAACAGGGCCAGATTTTATGATATCGATATACCATCTGTCAACTGTCCATGCACCGGATCACCTTTATAATATGACAACATCCCAgcatataacattatatatactTAACACATTTCGCATGCTTCCGAGTTGGCATTCCAAACCACCAACTTCATCGTTTTTCTgaacaccatatatatatatatatagatctttTCACGaagaaaatatctttttttttttttaaatccatataTCATTTTCATTAGATCCTAAACCACACGAAACCTAAAGAAGAATGGCGTATTTCTAAAAGTATAAGGAGACAAACTAAATTCCCACAGTCTCACGTGCTGGAAAGCATCAGCAGTCAATGTGACGTCCGTATCAGTTTCCTAAACCGTCTTATATAAAACTTGAGACTGCGCATGGCTTTTTCGTTTGCCTCACATGGGGTTTGACTCTAAAAATAGAACAAACACAGTGTGAATTACAATGCAGGTAGGCGCAAACTTAAAAGTGCTTAGGGGCAGGAGTGGAAAAGCGAAATAGGGATGAACCACTGAAAACAAGAACAATAACAATCTCAGGGGGAAACGGGCACATTCAGTATCTGTGTCAAGGAACAGAACTGATTTAGTCAAAACAAGTATTTCTCAACCGTCTGTATTCATAAAAGAGTAATCTAGGAGCGAAGACACGTACAGTAGGGCACGACGGGTCAAAGGCACAACACCAGACAAACAAATTGGGACGGAGAGAGAGACTTTAACGCTGCCACCTGGAACTAATTCCAATATTCTGCGTTGGAAGTGGACCTGAAAGCTATCTGAACAAAGGGAAAGTACAAACAGGATCCTGTGAGAGGGCCAAGGTCCCATTACAGGAGCTTCGGTGACTAATAAGTGGGCTTGAACAAATAAACTCTCTCCaggagggggaaaacattaacacaaACAAAGAAACAGAAAAGCCAACGACCATTTAAACAGATTATACTGTAGCTCACAAACTCAAGTACATCGTCTTCTTGATATGATCAACTAAAGGACGTGAGTTTAATGCGATAAAGAGAGGAACAGACAACACTTTGAAACACTGCGGACCATAAAAACGTCCATTTACATGATGCCATCTTAGACTGACCCCTAGATTCAACAACAGTTTATAAACAGATATGAATAATCAAAATAGAGCCTGGATTACCGTTCAAATACTGACAATTCGCAATGTAGTCACAGTAGATTCAGAGAAACCACAAcgaatttatcaaaaataaacacaaattaaagggaaagttcacctcTAAAATGAAACTCACGTCGCAAAAAACAAAACGTCTGAATACAAGAAAATTGACCAtcgaaacacaaatgaagattttttttctaaccTGAGAAATTTTTGTCTCTCGATTGAAAATCCTCTCACAAAACTTCAAAAGGTTTATAGATATttcaaaaaaatcaatcaatgcTTGATTCACTTTATTCTGAAGAGATATAATGACTTTATTTGATGAAGAttgaattttatttacATATTAACATTGATTATTTAGGAATGTTTAAAAATTCAAATTTCAGGATGCTTGTGATTTAGCTTCTGTTTATGTTTGCggttcaataaaaaaatgtacataataaataatgtaaatgaacaaaatgtaaataataagcCTATTTAACATTTGATTATCAAACAAGTGACTGTGTGCATCTATGTAAATCAACCGGTTGATTTCtattactttttatgttttgatctctttaaaatacattttgaaatctTCAAGTTTTGGCTGAATGTCAATATTTGTctcatattgaaaaaaaatcttcatttgtaTTGAGATGAATAAAGCCTTAAGGAAAAATCttaatttacatattaacatTGATTATTAATGAATGTTTCCAGAATTCACCTTTTAGGAAGCTTGCCTGATGCTTGAGAACCAATCAGGTTCAATCTTCAGTCGTGGTTTATTCAAGGATCTTAAAAAAAGATGAGATTTACATCAAGCGGGTACAGTTTAGCTTCTGTTTATGTTTGCTGTTCAATATAAAAACGTAAATGAAAGCCTATTTAATATTTGATTATCAAATAAGTGACTGTGTGCATCTATTCAAATCAACTGGTTGATTTAATACCTAGTTTTATGTTTTAATCAACAAATAAACTTTCATTTGCATTTGATAAAAATTTCTCTTATTGAAAAAtacttcatttgtgtttttaagaTGAAGTCTTATGGAATATTTTCATTTTGAGGCGAACCAACTCTTTAAACAACGAGGGCAACCAAAGCCTTCAAAGATGAGGCTTCAATGTTAAAcatatcagataaaaaaaaagtcaagaacGTTCCACAACAAATGCAGCCCTTTACATTCATAAACATTCTGCTGATGTTATCAGACTTTGTTTAAACCAAAAACAGaaaatttaaacatttcaatagcCAAACTGTTATGGGGAGAGCTATATCTGAATTTAAACTTGTCAgacaagtgcaaaaaaaaaaaaaaaaaaagatgcaacaAAGAGCCACTAATGCAGTTTTGCCCTGACTCAAAACTTGAGGCCACTTTGTCCATCAACAGTCTCCCGAAGCACCTGGACTATGATACCGCTAACACTAGAAGCCTCCTGCTTATTTCCAGTCATCGACAAAGAGTTCAAAGGTAAAACAAACCATTTCACATGTTGGCAACCAggctttaaagaaagaaaaaaaagatcttCAAGGTTCGATTTAGAACCTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010942 False 2905 lncRNA 0.35 2 26589644 26593298
TCONS_00010941 True 3252 lncRNA 0.34 2 26589644 26593298

Neighbor

gene id symbol gene type direction distance location
XLOC_004747 faap100 coding upstream 42396 26538861 ~ 26547248 (+)
XLOC_004746 chad coding upstream 63945 26512569 ~ 26525699 (+)
XLOC_004745 armc7 coding upstream 94793 26491637 ~ 26494851 (+)
XLOC_004744 NA coding upstream 97671 26489353 ~ 26491973 (+)
XLOC_004743 ndel1a coding upstream 102281 26467847 ~ 26487363 (+)
XLOC_004749 si:dkey-148d16.5 coding downstream 15585 26608883 ~ 26611971 (+)
XLOC_004750 arhgap12b coding downstream 28608 26621906 ~ 26726048 (+)
XLOC_004751 NA coding downstream 98521 26691819 ~ 26692051 (+)
XLOC_004752 NA coding downstream 144133 26737431 ~ 26834192 (+)
XLOC_004753 znf438 coding downstream 284083 26877381 ~ 26964998 (+)
XLOC_004738 CR932018.1 non-coding upstream 941401 25648127 ~ 25648243 (+)
XLOC_004735 NA non-coding upstream 1085264 25502406 ~ 25504380 (+)
XLOC_004733 CR932077.1 non-coding upstream 1159273 25312018 ~ 25430371 (+)
XLOC_004731 CR848736.1 non-coding upstream 1374917 25201543 ~ 25214727 (+)
XLOC_004754 BX469896.1 non-coding downstream 301023 26894321 ~ 26896616 (+)
XLOC_004762 dre-mir-10a non-coding downstream 541571 27134869 ~ 27134967 (+)
XLOC_004777 NA non-coding downstream 1783732 28377030 ~ 28381255 (+)

Expression


Co-expression Network