G127332 (lats2)


Basic Information

Item Value
gene id G127332
gene name lats2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26636231 ~ 26640460 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU171330
ggttaatttaatttatacatacattttacacacaaggactgtgaaagcatttttacaAATTCTCAGTTCatacataaatgtaaaaaaagagatAGCTGTCCCCATTACATCATGTATAATACTGCGTAGACATGGGTTTTTGAACATTAGCACAAGGGGAatttaaaaagggggaaaaaagatacaaaacaaATATCTATATCTGTATAAATATCAATTTAAGAGTAACAGAAATTGTATCATACATTAAGGAGTGGCAAAGGCAACAAGAGGCTCCTTAgagtaaaaatacaaaatgaaaaggATACACAAGTAAGTCTCGTGAAGAAATCAGATATCAAGTCAGTCAAAGATTGTCAGTCATCACTCTCTAACCttagaaacagaaaacacatcCAGGAAACACCTCACACACTCTGCTGAGAGCTGCGGCTCTCGTTATAAAGCTATTTTTCACGAAGCAGTCCGTCGTGGTGGACGTAGATTGGCAACGAGAGGTTTATAAAAATGGAAGTGAACATCTGGACCAGCTGAGAGGAAGAGCAACACCTGTCTGCCTTAATCTCAATGatggtgcccttgagcaaggcacgtCATCCATAATGGATCCAGTGGTGCTGCTCTGTGGAAGACTGCGGTTTATCTGGGAAGCTCACGGGCAACACtggctatgtttacatgcaatatTACTGGCTTTAGTCCAGTTTAAGTCACTATTAAACACAGTCATGACAAAccgcaaaaaacaaaaaggtactTTCGTATCGTGATTGCATGTGTCGGTCTGTGATGTGAAATTTACAAATGACCCGAGTTGCACCATTGTACAGTGGTGAAAGCCCTGTTTCCATTTCCTAAAACAATATGTTGCAGCCAGAGATACATTGAGTTAAAGAAAAATGGCATCTAATTTATTAAGTAATTTATTGTTTTGCCCACTTTCCCTCAAATCAACTGCCTTATTTAATTCTATTGCTTAAAGTTGTTGACTAGAATAAGAAGAAGATTGTTGGTGCATGTAAACAAAGCCAGTGTGAATCTGAAAATACTTCCACAGATAAATTATAATAACAGTTAAGAGGTCTGAAGATGTTGATGATAAggcaatcttttaagattgtgCTGCTCACTTTAGAACACaaggcacatttacagaaaaacaaactttcAATACATTGTaaggcaaaaataaaaaaaaatcttctgtaACAAATCTGATCCTCACATTTTCCATTATCGTTATGCATCAGAAAAATCTCTTTAAAAAAGGTTCTGACTTCTTTAACATTCCCAGTCATTAAAGTCAAATTCAGAATACTGTTGGAACAGTTTAGTGTTAATCGACCAAACAGTTCAGTTTGACACAGAGAGCAGTTTACCGTTTACTGATTGTCAATAAGCAAGAAAGTACTGGATGATAGTGTCAATACAGAACATGGCACAGGTCTGTAGAAAAAGTTAAACAACACTCAAACTTGTGGTCATTTCGGATAAATAAAGACAATGTACCAAACACTAACTCTTTGTTGAAGTATAACCATTTGCGGTTTTGTAAAATAGAGAAAGCTagtcattctttttttccaaattacATTTCCTGAAGCCAACCTGCCAcgctcctcctctttctctaaCCTTTATCTACTCTGTTCCATCTCTTTCTGAACCAGAATCCTTTACACTCTCCTCTCCTGCATTCAGGACCAGCCCGTCTGCAGGAGCTGCAGTCTCCCGTCGTTGTTCTGCAAACACTGATCGTCGTCATCATCACGGTCGCCTCCTTCAACGTCGAGAGGCGACGCACACTCCCAACATTCAATTAGAAAGGCACACGGCTCATTACTTTCAAAACCCAAGCACACTTGGCAATAGTGCCAACACTTCTTTAAgccacaacaaaagaaaaacaggtacacatgtaataacaattataaTATTAATGTAAATAATATTAAACACAATAATAAGCAGCATGTTGTAACTGAAGAGGAAATATATATAAACCAATATATTTGTACATTTCGGTACTCAAACGTTCAAAAAGGATAATAAGTGtttaaaaaactatatataatgtatttttgtattgcaCATAGTACTATCACGTTTGCTAGTGTAAGAACATGTTGCTTTGTGTTTTCATGGCAGCCTccagaagagaaagaggaggctGTTTAAGTTACAATGCAACTCATCTTTGCAAAATAGCTGTAAAATTGTGCATCTTGGTGAATGTGTGTTCATTTGCGTGAGCTTTGTTTCTCAGACAGAAACTAACTCAGCACCATCCGACCCGACGGGTCCAGGCTCGTCCGGGTCTGGCTCTGATTTCTCTTAACTTTCTTAAATAAGGTGTCATTCTATTCATCAGTTCTTTCCTTAAAACAAAGCAGGGGAATTCTTCCTGTAATGTACGAGCGGAAATTCACTGCATGTCAGGCCCTATAAACATTACAGTGGTTCAGTCTTTGATCCGACTAAAACTGAATTGGACTTGATTTTTAGAGCCTTGTCCGAACTCTACACACGCTCTTTGTGTAGgtggaagatttttttttttttaaatggtcagTTAGAATAGAGGATCAGTAACAGGAAGCATTTTATAAACACAAGGATATTTGTAACAGCAAACTCTGTGGGAAGGATAAGGCTCCATCTTAAGAACATATTACACTGAATTACAGTTGGCACAAAATGAGGCAGCTGTGGATATATAGGATAGATGGAGCAACCAAAAATATGTGGctaatttgttttacattttagtaAAGCAAAGTTTATCTGCTACAAATGCAGAAATTTGAAAACTGAATGCTGCCAAAAGGGACGCATTTTCTCTCACGCAACAAGAGGGCTGCTAAACCgattctctctgtgtgttaggGGAACCTGGGAGGATTTGTTTGGCCATCTAGTCTGAGCCAACGTCTTGAAATATGGACACTGAAATCTACCTGCAGAGACTGCTTTTTTTCACCCTTTACCTCGAGCTGTACTGGATATGTGTGCGCTGAGTGTGTGCACGTGCATGCAATGTGTCTTTGTAGCttattttgcagcagctgtGAAGGAGGTGTGTTGCCCCCCCCCCTGCGATCAATGAGTAAACTGGTTTCACTCATCATTGCTGTGTCTGATATTCGAGTGTAAAGCAGCTCGGGGAGAACGGGATGTAGCTCCGGTGTCGGAAGATCACAGAGATGTCCGTAAGACCCAAGGGTGGAAGGAATGGGACAAGAAACCGCTGGAAGAACCAGAAGTAGTCTTCGAATTAGAAGTCTTGTCTGTGATCCAGATATCCGTACACTCCCAATAATGTTCTTCTTTCAACCTGTACAGTTTCTGAGTCTTTTTCTTCTAACCGCTTTACCCTTGATGCAGTCAGTCACATACAAAATGTCGTTTCTTGGTCCCGGATCAGGGGAGTTTTGTATTTGAAGTCATTGTGGACGCACTATAGATTCCACAAGGTGGCGATGTTCATCAATCCTGCTCCTGCAACTTAACAAATCACACATGCCAAatatgcataaacacacacatgcgcacctGTGTAGCATGCACACCTCTACACACAGATGCATACACAGAAGAAGAGCAGTGGTAGGTGGGAGGGTCATGAGCTGAATGAGGAGCATTAAACCTGGTAATAATACGCTGCCCAGGAAGCCTATCAGTCTGCCGCTCTACACGTACACCGGCTCACATCCCTCCCcctgctctccctcctcctcttcatcttcctcctcctcctcctcctcctcttcttcttcttgttcgtCCTCCTCTTCTGGGCCCATGCTTGGCGACACCTCGCTGGCCTCAAGCGGTTTAGGGTAGCGGAAAGGGCAGCCGTTGTCGTCGAAGAATCTGCGGAAAGTGAACTCGTAGAAAGCGTGCTCTGGGTGCTTCCCGTGTGGGGAGCAGAGCGTGTCCAAGGCCCGGGTGCTGTCCCCGCTGTCCCGCCACGCCCCGGgtccaccctcctcctccacggGGTCAAAGTTGGACGTGTCCATTGGGTGGGCGATCTTGGGCCGGTAGGGTGCCGGTTGCTGCCGCAGATTGCTGGAGAAGTCCATCTGGGTGAAGAAGGGGTGAGCCTTGATCTCGCCGGCGCCGTTGGCACCCAGGCGATCCTCCGCGGAGCAGCAGAGACGACCAATGATGTCGACGGCCTCGGGGCTCAGTTTGACCTGGGCAGGCACCTGCAGCGTGCTCTCCCAG

Function

symbol description
lats2 Predicted to enable protein serine/threonine kinase activity. Acts upstream of with a negative effect on BMP signaling pathway. Acts upstream of or within convergent extension involved in gastrulation and secondary heart field specification. Predicted to be active in nucleus and spindle pole. Is expressed in several structures, including nervous system; neural crest cell; non neural ectoderm; pectoral fin bud; and pleuroperitoneal region. Used to study peripheral nerve sheath neoplasm. Orthologous to human LATS2 (large tumor suppressor kinase 2).

NR:

description
PREDICTED: serine/threonine-protein kinase LATS2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171330 True 4230 lncRNA 0.43 1 26636231 26640460

Neighbor

gene id symbol gene type direction distance location
il17d il17d coding upstream 70979 26561022 ~ 26565252 (+)
ift88 ift88 coding upstream 75350 26535953 ~ 26560881 (+)
ttf2 ttf2,LOC105900813,LOC105419959 coding upstream 225470 26396070 ~ 26410761 (+)
rnf17 NA coding upstream 262327 26314786 ~ 26373904 (+)
LOC120569747 NA coding upstream 509120 26099440 ~ 26127111 (+)
popdc2 popdc2 coding downstream 78045 26718505 ~ 26731164 (+)
wars2 wars2,LOC102792775 coding downstream 191533 26831993 ~ 26860003 (+)
tbx15 tbx15 coding downstream 226735 26867195 ~ 26907517 (+)
gdap2 gdap2 coding downstream 448535 27088995 ~ 27119350 (+)
LOC120569540 LOC100689803 coding downstream 940618 27581078 ~ 27587589 (+)
G127270 NA non-coding upstream 117943 26510175 ~ 26518288 (+)
G127273 NA non-coding upstream 130688 26503559 ~ 26505543 (+)
G127264 NA non-coding upstream 193933 26441396 ~ 26442298 (+)
G127209 NA non-coding upstream 279322 26352887 ~ 26356909 (+)
G127204 NA non-coding upstream 343442 26292443 ~ 26292789 (+)
G127333 LOC107712271,LOC107597418,LOC107724484,LOC107569193,LOC107658249 non-coding downstream 1855 26642315 ~ 26642650 (+)
G127336 lats2 non-coding downstream 19078 26659538 ~ 26660321 (+)
G127361 NA non-coding downstream 96106 26736566 ~ 26743198 (+)
G127366 NA non-coding downstream 116847 26757307 ~ 26761690 (+)
G127376 NA non-coding downstream 137834 26778294 ~ 26779081 (+)
zmym2 zmym2 other upstream 152143 26449443 ~ 26484088 (+)
mphosph8 mphosph8 other upstream 196946 26411477 ~ 26439285 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other upstream 506352 26116988 ~ 26129879 (+)
cacnb4a cacnb4 other upstream 971804 25630107 ~ 25664427 (+)
fzd5 LOC104950716,LOC108238837 other upstream 2241246 24372471 ~ 24394985 (+)
LOC120569906 NA other downstream 72890 26713350 ~ 26717397 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other downstream 1748183 28388643 ~ 28409839 (+)
G127814 itgb5 other downstream 2388442 29028902 ~ 29041224 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other downstream 2656024 29296484 ~ 29299361 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 2818684 29459144 ~ 29459978 (+)

Expression


Co-expression Network