G127336 (lats2)


Basic Information

Item Value
gene id G127336
gene name lats2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26659538 ~ 26660321 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU171334
GCGTTAACCAGCTCCTGCAGCATCTGCCGGTTGACCTCCCCGACGCCTGCAGGGTGCCCTGACCCGGAAGATGGACCCGACTCATTGGCAAAGGGCATGAGGGACCTGCGGATTTCCCGCAAGGCATTCTGGTAGTTGTTGAACTTCTGCGGGGGTCGGATCTGCTGCTGTCGGCTGGCTGTGTCTTTCCCGCTCTTGCAGTCGGCCCCTCTGCCACCGTCTGTCCGAGAGCTGCCCCCGTGCAGGGCCTGGCTCACCAGCTTTGCCGGCTGCTTTAAACCCTCCTTGATCTCCTGAAGCCTCTGGCGTGTGTTGCCCACATACGGGGCAGCTGGGAAAGTCTTGGGCCTCATTGCCTCAGTGCCCAGGGAAGGCACCTACTCTaaaagggaaacacccccacacacactcccacacacccTCCAAAAGATCCTTTTCAAGCTTGCTGACCTAAATAGTAAAGAGTCTCCAGGAGCACAGATCGGAGGAAGTATTTGTTTGTGTCACTTATTTGtttatgtctctctttgtgtttcgGATTCCTCCTGATGCTGGTGGGCTGGGTGAAGGTGAGGTGTGGTACTACAGGCATTCCATGGTGTGACTTTCAAGGCTCAGGTTCCAGCTTATTCCAGGAAATGCAGCCGGTCCCCAGGGCGCCGCAGagccaaaccatgatgctgccgaTCTTCGCCTGTGAAGAAGGGGATGGAGTTAGAGCGTGGAGACTGTGGTCACtcattg

Function

symbol description
lats2 Predicted to enable protein serine/threonine kinase activity. Acts upstream of with a negative effect on BMP signaling pathway. Acts upstream of or within convergent extension involved in gastrulation and secondary heart field specification. Predicted to be active in nucleus and spindle pole. Is expressed in several structures, including nervous system; neural crest cell; non neural ectoderm; pectoral fin bud; and pleuroperitoneal region. Used to study peripheral nerve sheath neoplasm. Orthologous to human LATS2 (large tumor suppressor kinase 2).

NR:

description
PREDICTED: serine/threonine-protein kinase LATS2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171334 True 744 lncRNA 0.56 3 26659538 26660321

Neighbor

gene id symbol gene type direction distance location
il17d il17d coding upstream 94286 26561022 ~ 26565252 (+)
ift88 ift88 coding upstream 98657 26535953 ~ 26560881 (+)
ttf2 ttf2,LOC105900813,LOC105419959 coding upstream 248777 26396070 ~ 26410761 (+)
rnf17 NA coding upstream 285634 26314786 ~ 26373904 (+)
LOC120569747 NA coding upstream 532427 26099440 ~ 26127111 (+)
popdc2 popdc2 coding downstream 58184 26718505 ~ 26731164 (+)
wars2 wars2,LOC102792775 coding downstream 171672 26831993 ~ 26860003 (+)
tbx15 tbx15 coding downstream 206874 26867195 ~ 26907517 (+)
gdap2 gdap2 coding downstream 428674 27088995 ~ 27119350 (+)
LOC120569540 LOC100689803 coding downstream 920757 27581078 ~ 27587589 (+)
G127333 LOC107712271,LOC107597418,LOC107724484,LOC107569193,LOC107658249 non-coding upstream 16888 26642315 ~ 26642650 (+)
G127332 lats2 non-coding upstream 19078 26636231 ~ 26640460 (+)
G127270 NA non-coding upstream 141250 26510175 ~ 26518288 (+)
G127273 NA non-coding upstream 153995 26503559 ~ 26505543 (+)
G127264 NA non-coding upstream 217240 26441396 ~ 26442298 (+)
G127361 NA non-coding downstream 76245 26736566 ~ 26743198 (+)
G127366 NA non-coding downstream 96986 26757307 ~ 26761690 (+)
G127376 NA non-coding downstream 117973 26778294 ~ 26779081 (+)
G127414 NA non-coding downstream 464715 27125036 ~ 27126371 (+)
G127415 NA non-coding downstream 466157 27126478 ~ 27127406 (+)
zmym2 zmym2 other upstream 175450 26449443 ~ 26484088 (+)
mphosph8 mphosph8 other upstream 220253 26411477 ~ 26439285 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other upstream 529659 26116988 ~ 26129879 (+)
cacnb4a cacnb4 other upstream 995111 25630107 ~ 25664427 (+)
fzd5 LOC104950716,LOC108238837 other upstream 2264553 24372471 ~ 24394985 (+)
LOC120569906 NA other downstream 53029 26713350 ~ 26717397 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other downstream 1728322 28388643 ~ 28409839 (+)
G127814 itgb5 other downstream 2368581 29028902 ~ 29041224 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other downstream 2636163 29296484 ~ 29299361 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 2798823 29459144 ~ 29459978 (+)

Expression


Co-expression Network