LOC120570261


Basic Information

Item Value
gene id LOC120570261
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 28712431 ~ 28713525 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU171813
GAAAAGGAGACACGGAGAACAGACGAGGGAGACACAACAGAGAGCAGGAAGAAACAAGGGACGTAGGGGTAAAATGTGGGTCTCAGGTGGCGTGGGACTTGTGGTGGAGAGGGACCAAGAACAGGACTGGAGGTGAGGCTAGACGAGAGGACGATCGAGATCTGCGAGGCCGGTGCTGATGCTCTATGGGCGTACAGGAGGATTCGGCGCAGTGAGACGTGTGATCGACCGCAGAACGGAAACGGAGAAGATGGTCAGAGAGGAATAGTCCCGCGCCACCCCCACTATGGAGCGAGAGGGACCGAGAGACCGGACAGGGACACAGACGAGGAGGCAGAGGTCAGGGAAGCAGTGGACTGGGAAGCAGAGGACGCGGAGATGAGCATACGGGCTGAAGCATTGACAGCCGTGACGACCTGAAGGAAGTGCAGGCGAACGAGCGGTGGTGCAGCTTGGGACGCATTGGCAGAGGCTGAAGCAGGGGATGCAGTCCCCTCAATGAAAGATTCAACGCCTGTGTATACAGATAACGTCTCCAGTGTGGGTAGCCCAACGCAACGTGGAGTGGCGTAAGCGAAGACGAGCCCAGGCCACCCCAGACGGAATTGGCCGCCCCTCTCGAGACCTGCGTATTTGAACAGACTGTTACATATACTTGGACATTGTGGTGGAAGTTCGGATTGACCTCGTCGgacctcctccttttttttttattacctcttTATATTTGGAGAactgtttttatcttttacctagatttaaataaagtgtttttaattttttaagtgGTTTTTGGGGTCCATTTCTATCAGTGTAAACATTTTGCTGGTATTTTAGTTTTAGAATAGGAGCTACACTAGTGACATAATATTTAGGCATGTTTTGACGAGCAACCGAGAATTCAAATGAAATGATTGAGAATTTCTTGCCTGAATACTCTACCAAACAAATGATGCTTATCCTTCCAGCCATCAATATGAgttaaaacaacacaaagatg
>XR_005641042.1
AGAACAGACGAGGGAGACACAACAGAGAGCAGGAAGAAACAAGGGACGTAGGGGTAAAATGTGGGTCTCAGGTGGCGTGGGACTTGTGGTGGAGAGGGACCAAGAACAGGACTGGAGGTGAGGCTAGACGAGAGGACGATCGAGATCTGCGAGGCCGGTGCTGATGCTCTATGGGCGTACAGGAGGATTCGGCGCAGTGAGACGTGTGATCGACCGCAGAACGGAAACGGAGAAGATGGTCAGAGAGGAATAGTCCCGCGCCACCCCCACTATGGAGCGAGAGGGACCGAGAGACCGGACAGGGACACAGACGAGGAGGCAGAGGTCAGGGAAGCAGTGGACTGGGAAGCAGAGGACGCGGAGATGAGCATACGGGCTGAAGCATTGACAGCCGTGACGACCTGAAGGAAGTGCAGGCGAACGAGCGGTGGTGCAGCTTGGGACGCATTGGCAGAGGCTGAAGCAGGGGATGCAGTCCCCTCAATGAAAGATTCAACGCCTGTGTATACAGATAAGTAAACGTCTCCAGTGTGGGTAGCCCAACGCAACGTGGAGTGGCGTAAGCGAAGACGAGCCCAGGCCACCCCAGACGGAATTGGCCGCCCCTCTCGAGACCTGCGTATTTGAACAGACTGTTACATATACTTGGACATTGTGGTGGAAGTTCGGATTGACCTCGTCGgacctcctccttttttttttattacctcttTATATTTGGAGAactgtttttatcttttacctagatttaaataaagtgtttttaattttttaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171813 True 1000 lncRNA 0.49 2 28712431 28713525
XR_005641042.1 False 777 lncRNA 0.53 2 28712446 28713312

Neighbor

gene id symbol gene type direction distance location
LOC120570124 NA coding upstream 3549 28707542 ~ 28708882 (+)
LOC120570328 NA coding upstream 100947 28609691 ~ 28611484 (+)
LOC120570107 NA coding upstream 214829 28492168 ~ 28497602 (+)
LOC120570105 NA coding upstream 224681 28484923 ~ 28487750 (+)
fer1l6 NA coding upstream 262481 28414638 ~ 28449950 (+)
LOC120570350 NA coding downstream 22073 28735598 ~ 28737558 (+)
raph1a LOC103372763,LOC102310239 coding downstream 90719 28804244 ~ 28892620 (+)
LOC120569951 LOC104957843,LOC103367760,LOC105922114,LOC103149907 coding downstream 592301 29305826 ~ 29307000 (+)
LOC120569953 LOC107102032,LOC105922254,LOC104957841,LOC105922255 coding downstream 596829 29310354 ~ 29311230 (+)
LOC120569955 LOC108238847,LOC106534872 coding downstream 602551 29316076 ~ 29316987 (+)
G127701 NA non-coding upstream 178259 28533943 ~ 28534172 (+)
G127665 NA non-coding upstream 326789 28385417 ~ 28385642 (+)
G127623 NA non-coding upstream 368633 28343492 ~ 28343798 (+)
G127613 NA non-coding upstream 483981 28228096 ~ 28228450 (+)
G127570 NA non-coding upstream 768809 27938694 ~ 27943622 (+)
G127747 NA non-coding downstream 179138 28892663 ~ 28895512 (+)
G127762 NA non-coding downstream 202447 28915972 ~ 28916196 (+)
G127784 NA non-coding downstream 224626 28938151 ~ 28938490 (+)
G127806 NA non-coding downstream 271175 28984700 ~ 29044221 (+)
G127805 NA non-coding downstream 365206 29078731 ~ 29084660 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other upstream 302592 28388643 ~ 28409839 (+)
LOC120569906 NA other upstream 1995034 26713350 ~ 26717397 (+)
zmym2 zmym2 other upstream 2228343 26449443 ~ 26484088 (+)
mphosph8 mphosph8 other upstream 2273146 26411477 ~ 26439285 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other upstream 2582552 26116988 ~ 26129879 (+)
G127814 itgb5 other downstream 315377 29028902 ~ 29041224 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other downstream 582959 29296484 ~ 29299361 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 745619 29459144 ~ 29459978 (+)
G127935 LOC103149918,LOC106933234,LOC104960782,LOC104932527,LOC108238793,LOC103482149,LOC105920790 other downstream 753619 29467144 ~ 29474550 (+)
G127938 LOC100695514,LOC102778272,LOC103367768,LOC104960783 other downstream 762587 29476112 ~ 29478950 (+)

Expression


Co-expression Network