XLOC_004752


Basic Information

Item Value
gene id XLOC_004752
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26737431 ~ 26834192 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010944
CGGGCGTGAGCCGTCAGTTTGAGCACGTGAGGAGGACCGTCGCTTTTTAAACTGAAGTGGGATTGTTTATGTCATTTGGTTAAACTCTTGTATCAAATGTCAGCCTAAACATAAATTGTCCATTGAGACGTTTATATAGCTTGAAATGATCCTTTAACTTTTcaaaattcactgtaaaaaatatataaaggtgTTAGTGGTCTACTAATGTGACTACTCGTTGCGTTTTAGTGTATATTTCCGATCGATTTTCTTCTGGATGGACAATCACATGTAGCCTACTCAAAGCAAGACGGCAAAGCAAACTTCGTTAGTTCAAGGGTTTGGCCAAAAGTCACCGTCTGCCATTATGAGACTTGCATGTGATATCAAGAAGGGTAATGTCGCTGCCTTATGAAGCGACCAGCACGTTTACCTCCCTGAATCCTGAGCTCTGCATCGCTGGACTAGTTTTCACCTTTGTATGGAAAGTAACTGGCTGTATACCTGTCTGAACCAACATTATGACAACACAAGGTGTTATTTATGAGACGTGTAGCGGAATTCCTGTGAGTCTGCAGCACCTGCTGTAGTTGGACGGGAAGCCGAGCGGCAGCTGCCGTACTCTGGATGCAAAAAAGGAACGGTGACGGCTGAAGGTGTGTTGATGCTGCTTTTGTGCTGGAAGAGACTGTCGTGTTTATGCTGTGGATCAATCAGGAGATATTGCAGGTTGTTGCCTATTATGGATGCAATATGGGGATGATGGGATTGGATGTGACGAGCGTGAAGTAAGATTAAAGAAATGAAAAACAGCTTTTCGTTTTTAGCTCCTTTATAAACAGGAGGTGAGGGTAAGAGAAACAGTCTGGCTGCTGATGAGACGCCCCTTGCTTATTCTTTGATATGTTCATAAGGCAGAGCAGAAAACACAatgttagttttttgtttgttcttggggaaaaaaaatccCTATAACCTGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010944 True 963 lncRNA 0.43 5 26737431 26834192

Neighbor

gene id symbol gene type direction distance location
XLOC_004750 arhgap12b coding upstream 11383 26621906 ~ 26726048 (+)
XLOC_004751 NA coding upstream 45380 26691819 ~ 26692051 (+)
XLOC_004749 si:dkey-148d16.5 coding upstream 125460 26608883 ~ 26611971 (+)
XLOC_004748 NA coding upstream 144133 26589644 ~ 26593298 (+)
XLOC_004747 faap100 coding upstream 190183 26538861 ~ 26547248 (+)
XLOC_004753 znf438 coding downstream 43189 26877381 ~ 26964998 (+)
XLOC_004754 BX469896.1 coding downstream 60129 26894321 ~ 26896616 (+)
XLOC_004755 msl1b coding downstream 187787 27021979 ~ 27028808 (+)
XLOC_004756 fbrs coding downstream 200402 27034594 ~ 27061336 (+)
XLOC_004757 srcap coding downstream 227528 27061720 ~ 27092286 (+)
XLOC_004744 NA non-coding upstream 245458 26489353 ~ 26491973 (+)
XLOC_004738 CR932018.1 non-coding upstream 1089188 25648127 ~ 25648243 (+)
XLOC_004735 NA non-coding upstream 1233051 25502406 ~ 25504380 (+)
XLOC_004762 dre-mir-10a non-coding downstream 300677 27134869 ~ 27134967 (+)
XLOC_004777 NA non-coding downstream 1542838 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1783509 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 2099332 28933524 ~ 28946150 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G265802 NA non-coding CI01000063 null 6138691 ~ 6151199 (-)