LOC120569241 (LOC103373060)


Basic Information

Item Value
gene id LOC120569241
gene name LOC103373060
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4394058 ~ 4398874 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817040.1
CGTTCTGAAAGACTTCCGCTCACTGCTTCGCAACCCAAAGCCAATTGTCGATGCGCTCTCCACTCTAGCTGGAGTGGTTGTGACTGAAGGACCCACTGAGCCAGTGGTGGAGATAACTACAGTGCAGACTCAAAATGTGGTTCGAGACATTGTCTTCCTTGTGGATGGATCAAACTACGTTGGCAGCAGTAACTTTCCCTATGTGAGAGATTTCATCATCAACGTGGTCAACCAGCTGGATGTACGTCCTGACAGAGTCAGGATTGGTCTCCTGCAGTTTGCTGAGAGCCAAAAGATTGAATTTCATCTGAACAGCTATAGCAGCAGGCAAGATGTTGTCAATCAAATCTCTCAACTCAGGCTGACTGGAGGCTCAGTTTTGAATACAGGAGCTGCCATGAATTATGCCCTTAGCAAAATGTTCCAGCCATCAACTGGGTCACGTAGGAAGCAGGGAGTCCAGCAGGTGTTGGTTCTGATCACAGGTGGTCCAGTCCAGGATCAGGCTAAAAATGCAGCTGATAAATTGGCTCTTGCTGGTGTTTTGACCTTCACAGTCAGTTCTGGAGAAGCAGATGAAGGCCTAATGAAATCAGTTGCCTTTGTTGAAGATTTGGCTTACCATGAAacaagcttctcaaatgtgcCAGCTCTGGCTGGACAAATAATGCCGAAGTTGATAACAGTGGTTGGCGATACAGATGTGACAGAAACATTCCCTGAGGAAACTGCTTTTGTTGCTGGAGCTGAGAGAGATGTTGCCTTTCTCATCGATGGCACAGAAAATGTCAGAAGAGATTTTGCCTACATCTGAGATTTTATCCTTAAAGTCATTGAACCACTTTGTATTGGGATTGTATTTTCCTCCTTTGCATCCAAAGCCAAactattttttaaaatgtaaatgtttgagtGTTTGTCACTTGTGGTAAAAATATAACTGAACAAGACCGGTGGGCAGACAAAAAGGGTTGCTTTGGTATTTTTTACGGAGCAGCCACAAACACAATATAATCATCGCAGTCAAAATGTCACCAGCTTTCAATAGTAGGCCCTTTATGTAGCCAGCAGCCTGATGCAGGTTATTGAATGTCGAACAGCTCGACTCACAGCGTGTACCCGCCCTTCCACTACCATCCAGTCACATCTCTGAGCTTCTTTCTGCTTCATATAGTCAGTCACTGGTTGGCTcttgtgcacacacacttaatTGCTGAGACTTGTTGAGGAAATGGGACAGCGGGCACTCAAAGCGGTGTTAGCAGGAGATACTGAACACACTGGGGAGACGCTGCTTCACTGTTTACAAAGCTTTCAAATGTTTGTAAGGAAATATAAAGAACTGTAATCTTTGTGCAATAAAAGTTCAAGCCATATTGGTAACTGCA

Function

NR:

description
PREDICTED: collagen alpha-3(VI) chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817040.1 True 1388 mRNA 0.44 3 4394058 4398874

Neighbor

gene id symbol gene type direction distance location
LOC120570038 NA coding upstream 36 4378415 ~ 4394022 (+)
mlphb NA coding upstream 115447 4214424 ~ 4278611 (+)
trim63b trim63,LOC103367607,LOC102793986,LOC102215866 coding upstream 327297 4064863 ~ 4066761 (+)
LOC120570277 dpp10 coding upstream 543163 3609281 ~ 3850895 (+)
mmadhcb mmadhc coding upstream 995215 3393829 ~ 3398843 (+)
maip1 LOC101475169,LOC100711160,LOC102305852,LOC102192410 coding downstream 10990 4409864 ~ 4416440 (+)
pgap1 pgap1 coding downstream 17979 4416853 ~ 4436351 (+)
hecw2a hecw2 coding downstream 51380 4450254 ~ 4512324 (+)
stk17b stk17b,LOC103370988 coding downstream 114792 4513666 ~ 4526011 (+)
ftcdnl1 LOC103370986 coding downstream 167665 4566539 ~ 4575421 (+)
LOC120570443 NA non-coding upstream 180298 4213388 ~ 4213760 (+)
G121941 NA non-coding upstream 198051 4195664 ~ 4196007 (+)
LOC120570435 NA non-coding upstream 261698 4084213 ~ 4132360 (+)
G122021 NA non-coding downstream 42743 4441617 ~ 4445127 (+)
G122022 LOC103376870 non-coding downstream 48221 4447095 ~ 4447339 (+)
G122024 NA non-coding downstream 49383 4448257 ~ 4448460 (+)
G122034 NA non-coding downstream 183945 4582819 ~ 4583029 (+)
G122039 NA non-coding downstream 237699 4636573 ~ 4636980 (+)
lrrfip1a lrrfip1,LOC102295012,LOC102195615,LOC100691582,LOC103370951,LOC107396304,LOC107099056 other upstream 41135 4294851 ~ 4352923 (+)
G121917 col6a3 other upstream 283625 4108030 ~ 4110433 (+)
cops8 cops8 other upstream 321944 4061037 ~ 4072114 (+)
ndufv3 NA other upstream 1422726 2962205 ~ 2971332 (+)
pde9a pde9a other upstream 1475309 2868579 ~ 2918749 (+)
G122036 NA other downstream 319411 4718285 ~ 4720843 (+)
zgc:136439 LOC103367146,LOC106581848,LOC101483704 other downstream 417215 4816089 ~ 4818139 (+)
G122128 NA other downstream 495911 4894785 ~ 4895502 (+)
fkbp7 fkbp7,LOC102196462,LOC104949636 other downstream 575915 4974789 ~ 4982979 (+)
LOC120569936 LOC102781033,LOC104920804 other downstream 661127 5060001 ~ 5070248 (+)

Expression


Co-expression Network