cryba2b (cryba2,LOC106581834,LOC106586156)


Basic Information

Item Value
gene id cryba2b
gene name cryba2,LOC106581834,LOC106586156
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 9943512 ~ 9946701 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817042.1
GGCCCTATAAAAACACAGGCGAGGGTCTCTCCCCCGACATTGATTACACTGGATCTGTCCCACCTCAGTACCGTCTAGTAACCCCTAAGGGAGAAACAGCAGCCATGAACACTCAACAGATGGAGCAGATGGGCCAGTTCAAGATCACAGTCTGGGAGGAGGAGAACTTCCAGGGAAAGCGCTGTGAGTTCATGCTGGAGTGCCAGAACATCATGGAGAGGGGCTTCAACAAGATCCGCTCCATCAAGGTCGAGAATGGGCCTTGGGTGGGTTATGAGTACCCAGAGTTCCAGGGACAGCAGTTTATCCTGGAGAAGGGAGACTACCCTCGCTACGAGGCCTGGAGTGgaaacagcagctacagaaCCGAGCACATGCTTTCCTTCAGACCCATCAAGTGCGCTAACCACAGTGACAGCAAGGTGACCCTGTACGAGTGTGAGGACTTCCAGGGCCGTAAGTTTGAGATGTGCGATGACTACCCCTCCCTACAGGCCATGGGCTGGTGCAGCAAGGAGGTTCCCTCCATCAAAGTCAACTCAGGAGCctggGTTGCCTACCAGTTCCCTGGTTACCGTGGCTACCAGTACAtcctggagagagacagacaccaAGGCGAGTACAGACACTACAACGAGTACAGCACCCAGGCTCACACCAACCAGGTGCAGTCCATTCGTAGGATCCAGCACTAAGCCTTCATTCTGCCTGCCTGACCTAACctgaaacaaaaaaactctCCCCGAAACCCCTTCCTCAACTTGAACCCCCGGACACACCGCTGTCACAGAACAGTAGATGGACAAACTCTTTCTATCACTCTGTGGCTCTGCATGTATGGATATCTAAGTACCTACTTCTTCTACCATGCTAAAACATGTTCTTGAAATAGGAAATAAAGGCTTTTCTTCAAAACTAGA

Function

symbol description
cryba2 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Implicated in cataract 42.

NR:

description
beta-crystallin A2 isoform X1

GO: NA

KEGG:

id description
K23482 CRYB; beta-crystallin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817042.1 True 920 mRNA 0.52 5 9943512 9946701

Neighbor

gene id symbol gene type direction distance location
fn1a LOC103365935 coding upstream 25886 9884821 ~ 9917626 (+)
LOC120569754 LOC102780892 coding upstream 95753 9842142 ~ 9847759 (+)
epb41l5 NA coding upstream 613036 9289444 ~ 9330476 (+)
ptpn4a NA coding upstream 659272 9203215 ~ 9284240 (+)
tmem177 tmem177,LOC102787076 coding upstream 742735 9196817 ~ 9200777 (+)
fev fev,LOC102784253 coding downstream 2389 9949090 ~ 9954877 (+)
LOC120570306 NA coding downstream 153231 10099932 ~ 10104167 (+)
LOC120569327 LOC103358003,LOC100710305,LOC102781664,LOC101475894 coding downstream 264409 10211110 ~ 10217650 (+)
rabl3 rabl3,LOC102779363 coding downstream 1183356 11130057 ~ 11134144 (+)
nxph2a nxph2,LOC101474521 coding downstream 1209889 11156590 ~ 11175940 (+)
G122980 NA non-coding upstream 229874 9693295 ~ 9713638 (+)
G122979 LOC103367214,LOC104965381 non-coding upstream 263758 9675190 ~ 9679754 (+)
G122975 NA non-coding upstream 275753 9641610 ~ 9667759 (+)
G122970 NA non-coding upstream 447302 9488953 ~ 9496210 (+)
G122910 NA non-coding upstream 759358 9183875 ~ 9184154 (+)
G123074 NA non-coding downstream 194646 10141347 ~ 10185084 (+)
G123078 NA non-coding downstream 200300 10147001 ~ 10152280 (+)
LOC120569328 NA non-coding downstream 262582 10209283 ~ 10281869 (+)
LOC120570334 NA non-coding downstream 303475 10250176 ~ 10321796 (+)
G123118 NA non-coding downstream 682844 10629545 ~ 10629939 (+)
umps umps other upstream 14621 9920624 ~ 9928891 (+)
G122846 NA other upstream 1146766 8795453 ~ 8796746 (+)
hdac4 LOC103356262 other upstream 1626819 8170700 ~ 8316693 (+)
G122588 NA other upstream 2794473 7146625 ~ 7149039 (+)
ybey ybey other upstream 4731610 5209102 ~ 5211902 (+)
lrp1bb lrp1b,LOC102779748 other downstream 389290 10335991 ~ 10618696 (+)
LOC120570060 NA other downstream 1305216 11251917 ~ 11260642 (+)
serp2 NA other downstream 2060956 12007657 ~ 12013200 (+)
G123539 sept10,LOC102785043,LOC103375466 other downstream 3103057 13049758 ~ 13279866 (+)
G123633 NA other downstream 3406605 13353306 ~ 13354085 (+)

Expression


Co-expression Network