LOC120569248 (LOC102780588,LOC100690496,LOC101481378,LOC102206814,LOC103352953)


Basic Information

Item Value
gene id LOC120569248
gene name LOC102780588,LOC100690496,LOC101481378,LOC102206814,LOC103352953
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18873063 ~ 18885787 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817057.1
GTAAATGAATCACGTAGCACTAGAACAGCCCTTCTTCATGCGATCTTGCCAGACCTATTGGAGAAACCCCCCAAGGCAAGATCTGTCACTGTTCACTCATTTGCTGGAATACGATCAGAAACTATGGTAAATGCACCAAGAAATACAATGGTGTCTCTTATAAATGCGTCGAAAGGATTCTGGTCAGATCTCATTGCGAAGGGAGCAGGTTTCAACAGTTGACGCGGAGAGAACTGAGCGTAGGAAAAGCGATTAATTTTGATTATCTGAAATCTTCCAGTACCTCTTTTCGCGTTTTTTTTTCGGGCAAACGTTCACAGGGGCAGTGCAGAAGAACATTGTCCGAATGAGGAATGCAAGAGCACTGGGTCCAATTGGACTGGATTATGGGATTACTGGACTGATTATAGGACAATCATCGGGCAAAAGTCGCAGCCGTGCTATAGATGCTCTTGAATGACGGGAACACAAAAGGTTGGACAGGATTTACAGCTCTATATCCTGCTTTTATTCTACTTTGTGGCATGAGCAGACTGTGCAACACGAGCAGAACCCATATGCAACAGTGTGCCGCACAGGAGAAAAAGTAAATGCATTGTGAATGGTAACATCGGACAATGCTGCATTTTGAACGGGCATGTCAGTATTTGCTGTAGCCTAGGTGTAGATGTCGCATGAGGGCAATGCGCTTTTGTAAGCGACGGTCTAACCTTCACCACAGAGATTCAAACGCTTTAACCTTGGATGCAGTAGGGAATATTAATACTTTATAGTCATCGATTATTCATCAAGTCCCCCCTCGTGAGGAAAAACGAAGCATTTCTCGTTCACTATGTTGAATTTGATCTTTTATTCATGCATTAGGTGTCGTCGGGCGGTCATCTTTGTTTACAGAAAGAGTTCATCATAGCCGAACGGCATGTGAAAGAGGTTAAAATACAGATTAAAAGGCAAAAAGGATTTACACATCGATTTAATACCCAATTAATGTGGGATCGGCGTCAACCACTTGCCTGGTTGGGGTTTAGTCCTCTAGGTTTGCCGTAATCAACAGGTTGAAAGTCAacgatttttttctttctgtctgccaCTACCGCATATCCAGTTGAAGGGATGCGTCTCTCTGTACCCATTTTCTTTCTGCTGTGGGTTAAAGCCCTGACATTGAAAAATCTCAATTATTCTGTCCCGGAGGAGCAAGGACCCGGCACTGTTATAGGTAATATAGCAAAAGATGCCGGATATGGGACCatggagagggggaaaaaatccAACTTCAGAGTACTGGAGAATTCTGCTCCACATCTGGTGGATGTTGACCCGGAGAGTGGACTAATCTTCACCAAACAAAGGATTGACAGAGAAACGTTATGCAGGCGCAACCCAAAGTGCCAGCTCTCGATGGAGGTGTTTGCCAACGACAAGGAAATATGCATGATCAAGATTGATATACAGGACATAAATGACAACTCGCCCAGTTTTCCTTCAGATCATGTTAATATTGATATTTCAGAAAACGCAGCTGCTGGGACACGCTTCCCTCTGACTATTGCACATGACTCAGATTCTGGGGAAAATGGGATAAAGACCTACCAGGTCACAAGAGATGAttacaatacattttctttGGATTTAAAAGTGAGGGGTGATGGGACTATATATCCAGAGCTGGTGGTTCAGAGACCTCTGGATAGGGAGGACCAGAGTCATCACACCCTCCTCCTCACAGCAATTGATGGTGGGGAGTATCCAAGATCAGGCTCCATGCAAATCAACGTCAGAGTGACTGATTCGAATGACAATAGCCCAGTTTTTGAAAAATCCTCTTATGTGATTGAGATTCTGGAGAATTCACCTCCCGGAAAAGTACTCATAGATTTAAACGCCACTGACCAAGATGAGGGAAGCAATGGGCAGGTGGTCTATTCCTTCACTGGATATGCATCTGAGAGAATCCAAGATTTGTTCTCCATTGACCCCAATACTGGCGTCATCAAGGTCCAGGGAGAGATTGACTATGAAGAGAATCCAATCATAGAGTTTGACGTACAGGCTAAGGATCTCGGGCCCAATCCGATACCAGGCCATTGTAAAATTACTGTCAAAGTGCTTGACAAAAATGACAACTCGCCAATAATAAGTTTTGTCTCTGTTCGGCAGGGAGCCATCAGTGAGGCAGCACCTCCAGAATCTGTCATAGCGCTAGTGAGAGTAACAGATAAAGACTCTGGGCGTAATGGTCAACTTCAGTGCAGGGTGCTGGGTAATGTACCCTTCAGACTGCAGGAGAACAATGATAATTTTTACACGCTGCTCACAGACAGACCCCTGGACAGGGAAATGAAAGATGAATACAATGTAACAATTGTGGCGAGAGACAATGGGATCCCCTCTTTGAACTACACTAAGTCGTTTACTGTGAAAATCTTGGATGAGAATGACAATGCACCACGCTTTACAAAGACAGTGTACGTGCTACAGGTGCCTGAAAACAACATCCCGGGGGAGTATTTGGGCTCCGTTCTAGCCCACGACCCAGATGTAGGACGAAATGGAACAGTGTTGTACTCCATTCTGCCATCACATATAGGAGATGTTTCAGTGTACACCTATGTGTCTGTTAATCCCACCAATGGAGCCATATATGCCTCACGCTCTTTCAATTATGAGCAAACAAAATCCTTTGAGTTCAAAGTTCAGGCTAAAGATGGAGGATCCCCTCACATGGAGAGCACTTCAACAGTCAGGGTCAATGTCCTTGACGTAAACGATAATCTCCCAGTTATTATTTTACCCCTTCTGCAGAATGACACAGCCGAAATCCCAGTGCCCAGAAACGTGGGTATTGGATACATTGTGGCTACAGTGAAAGCAGTGGACCATGACCATGGAGAAAGTGGCCATTTGACCTATGAGATCACAGAGGGAAACGACGACCACCTGTTTGAGATGGATCCGGTGGGAGGGGAGGTCAGAACTGCTCATGCTCTTTGGGAAGAGGTCGCCCCAGTGGTTGAGCTGGTGGTGAAAGTAACTGACCATGGCAAGCCCCCCTTATCTGCCGTGGCTAAGCTGATCATTAAGGCGAACACAGAACCGGCAGCAGGAGGGGGTACCAGCGCGAGCGGGGAACAGCAGCACTGGGATGTATCCCTGCCCCTCATAGTTACCCTCTGCATTATCTCTGTCATGCTCTTAGCAGTCATGACCGCCATCGCTGTCAAGTCCAAACATCAAGATAAGGAGTCTGGGAATTATAACTGCCGCATGGTTGAATACTCCAATCCTCCAGTGGGGAAAGGCAAAAAGAAAAGGATCAACAAGAGTGACATCATGCTGGTGCAGAGtgagatggaggagagagatTCTGCGAGCAGGATGAATGTGGTGAGCAGTCCTTCTCTCATCACTTCACCAATATGTTTTGACTACCAGAGCCCTCTGCCGCTCACACTGCCCAGGTCAGAGGTCATGTACCTGAAAACCACCCCAAACAGCCTGACGGTCCCCAGGGCAGGTTGCCAGTCCAGCTTTGCCGGGCTTAGCACAGACACTCCAGCGAATAGGATGTCAGTGATACAGACGGAAAATTTCCCCTCAGAGCCCAATTATGCTGGCAGCAGGCAGCCATTTGTTCAAAGCTCAACATTTAAGGATGCAGAACGAGCAAGCCTCCGAGACAGTGGCCATGGTGATAGTGACCAGGCTGACAGTGACCAGGATACTAATAAAGGCTCACACTGCGACACGTCTGCTAGGGAGGCCCTCAAGATGAAAGCAACAGCAGTTAATGGCCAGCCTTTTGAGCAGGAGCAAGACAAATCAGTCCACTGCACCGATGAATGTCGTGCACTGGGACATTCTGACAGATGCTGGATGCCAAAGTTACGGGTAGGAAGCCAAGCAGACAGCGCCGATAATCGCACCAACCTTTTCATCCCTGTGGGAATGGATGCCATGGTAGAGACAGAGATTTATGGCACcatcagctgcagcagcagaaaaACCCTCAGCACGTTTGGAAAGGAACAGCGGGACAGTACAATCCTTGTGGCCAATGTCAAACCTTACTTAAAATCGCAGCGTGCACTAAGCCGACCGCTACAGGAGAGTCCATCTGAGTCCAGTAGTCCCACCAAGAGTAGTATGCCCCTGGACTTGGCCAACCAAGAGTCcaaagaagagagggaggggggttcAGACAGCAGTGCCTATGGCCCTCCAGATGGCCAGTGCTCCCCACTGCACACCGAATTGGAGGAGCCCTCCTACCTGACTTGTGAACTCAGGCCTAAGTCTCTGTCAAGcagcttcattcacagctctGTCATCAGCCAGGAGTGTGGGGGGTCAGATTGTGCTCTCGACCCGCGAGACTCTGGTAACTGACGGGCCAGGTGATCCCGCTCGCTCTCACCTGCCAGgggtgtgatgatgatgatatcaCAGATTAATGACCAAGAGGTGATTTATTTTGACCCACAGAGGTGTCCAGGCACACATTGTATAACCAAAAACCATCtgctttgtctgtttgttttttttagtttgtgaCTTGTTGTGTTTAGGTGAAATATGTGTCCTTGACTGATGTGAAGGGTTTTTTTGGGGAGGGGAACCAGTGCTTACCTGACTTCAAGTGTTTTCATAGTGTACTGTACCTGTCAATTTAGGTGTCTGTAATTTACACATTTCAAGCTCCAATTTTGTGAGGCTGTGGAACAAATTGCTACTGTTGAGCTATTGAGTCCTGTCTGCTTTTGTACAGTGAAGCTTCCTGTCTCCATTTAGTGTATAAGCAAAATCTCTTTGAATATCACAGACAACTGAAATACATATCAGTGATGTTAAATACAAAAGTGAAGTGTCTTATGAACTGTCAATGGTGGTGCAACAGGGAATGTCCCTTTTCATAACACCATTTGAGGTTCCtataaaaaacagttttttaagAATGTATTTGTAATTTTATTGTTGTCCTCTGCAGTTTATGTGAAAATAAGCGGAGCTTACACGTGAATGTGGGCTACTGTACTTGttctgtattttattaaatttgtaTACACTGTG

Function

NR:

description
PREDICTED: protocadherin-17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817057.1 True 5070 mRNA 0.46 4 18873063 18885787

Neighbor

gene id symbol gene type direction distance location
slitrk5b slitrk5,LOC100690770 coding downstream 20273 18849289 ~ 18852790 (-)
gpc6b gpc6,LOC104947503 coding downstream 83769 18704688 ~ 18789294 (-)
LOC120570238 cldn10,LOC103391834,LOC104947506 coding downstream 264249 18606426 ~ 18608814 (-)
LOC120570204 NA coding downstream 267892 18603123 ~ 18605171 (-)
LOC120569518 LOC101478235,LOC102203487,LOC102783581,LOC104922687,LOC104947508 coding downstream 271681 18599472 ~ 18601382 (-)
pcdh8 LOC104947529,LOC103352945 coding upstream 12889 18898676 ~ 18903097 (-)
ednrbb LOC103352943,LOC104947527 coding upstream 57564 18943351 ~ 18947075 (-)
cog3 cog3,LOC102779731 coding upstream 76502 18962289 ~ 18975007 (-)
mid1 LOC103352941,LOC100711508,LOC102207649,LOC102290384 coding upstream 91425 18977212 ~ 19004027 (-)
LOC120570505 LOC104947492,LOC103352939 coding upstream 125040 19010827 ~ 19033189 (-)
G125116 NA non-coding downstream 25694 18845832 ~ 18847369 (-)
G125113 NA non-coding downstream 27768 18844546 ~ 18845295 (-)
G125112 NA non-coding downstream 28725 18844100 ~ 18844338 (-)
G125108 NA non-coding downstream 44561 18827542 ~ 18828502 (-)
LOC120570508 NA non-coding downstream 53742 18815846 ~ 18819321 (-)
G125173 frmpd4,LOC100710969,LOC102314130 non-coding upstream 187448 19073235 ~ 19076766 (-)
G125178 NA non-coding upstream 203715 19089502 ~ 19090779 (-)
LOC120569517 NA non-coding upstream 222513 19108300 ~ 19113781 (-)
G125227 NA non-coding upstream 315959 19201746 ~ 19205941 (-)
G125293 LOC103392014,LOC104967650 non-coding upstream 546277 19432064 ~ 19432431 (-)
G125090 NA other downstream 168386 18700887 ~ 18704677 (-)
G125089 dct,LOC102781940 other downstream 173261 18695480 ~ 18699802 (-)
prkra prkra other downstream 709314 18156732 ~ 18163749 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other downstream 757966 18113110 ~ 18115097 (-)
fastkd1 fastkd1,LOC102780871 other downstream 1830691 17035373 ~ 17042372 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 346200 19231987 ~ 19258846 (-)
G125326 dopey2 other upstream 710142 19595929 ~ 19597521 (-)
si:ch211-214p13.3 NA other upstream 865914 19751701 ~ 19768586 (-)
LOC120570223 NA other upstream 904265 19790052 ~ 19796220 (-)
si:ch211-214p13.7 NA other upstream 1035481 19921268 ~ 19923735 (-)

Expression


Co-expression Network