nr4a2a (nr4a2,LOC106586168,LOC104920078,LOC103363922)


Basic Information

Item Value
gene id nr4a2a
gene name nr4a2,LOC106586168,LOC104920078,LOC103363922
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15812684 ~ 15817665 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817077.1
AGTCGAAGCTGGTGTCGCTGTCAGTGCGCGGAGTCACACGGTCTGTCTGCCTGGCATTGTTGGGTACCGCCGCTCATGATTTGGAGCTTTTACTGAAATTGATGAATACCTCCTGCATGCTTATCGCATGGATTGAAAGCCACGATCCTGATGTGAAAGAGGGGAAGATCCAGAACACAGCCGCTTTCTTGCATCCTGTCAGCCATACAACTCCTGACAATATCAATTTCAAGTGTCACCGAAAAACGGTCAGAAGACTTGAGCCATGCCCTGCGTTCAGGCTCAGTATGGATCATCACCTCAAGGAGCTAGTCCTGCTTCCCAGAGCTACAGCTACCACACCGCAGGAGAATACAGCTGCGACTTCTTAACGCCAGAGTTTGTTAAGTTTAGCATGGACTTGACCAACACTGAAATTACAGCTACTACTTCTCTCCCAAGTTTCAGTACATTCATGGACAACTATAACACTAGTTACGACGTTAAACCGCCCTGTCTGTATCAGATGCCCCACTCTGGAGAGCAGTCCTCTATCAAGGTAGAGGACGTCCAGATGCACAACTACCATCAGCAGAGCCACCTGCCACCTCAGTCGGAGGAAATGATGGCTCATTCTGGGCCTATGTACTTTAAACCCTCCTCGCCCCATGCCCCGAGTACACCAAACTTCCAGGTTCAGCCTAATCACATGTGGGAGGACCCTGGCTCCCTCCACAGTTTCCACCAGAACTATGTTGCGGCCACGTCTCATATGATGGACCAGCGCAAAAATCCGGTGTCAAGGCTGTCGCTCTTCTCCTTCAAGCAGTCCCCGCCCGGTACTCCTGTTTCCAGCTGTCAGATGCGGTTCGACGGGCCGCTGCACGTCTCCATGAACCACGAAAACCCGGGCGTGCACCGCGGCCTGGACGGCCAGAGCTTTGGGGTGCCCATACGGAAACAGGCGGGTCTGGCCTTTCCTCACTCCCTGCAGCTCGGCCACGGGCACCAGCTGGTGGACAGCCAAGTGCCATCGCCCCCGTCCCGAGGATCTCCGTCAAACGAGGGTCTGTGTGCAGTATGTGGGGACAACGCAGCCTGCCAGCATTATGGAGTGAGAACCTGCGAGGGCTGCAAAGGATTTTTCAAGcGCACCGTTCAGAAAAATGCAAAGTACGTGTGTTTAGCAAATAAAAACTGCCCTGTCGACAAACGCCGAAGAAATCgttgccagttctgccgtttcCAAAAGTGCATTGTCGTCGGAATGGTGAGAGAAGTTGTCCGAACGGATAATCTAAAAGGTCGGAGAGGACGCCTACCATCCAAACCCAAAAGTCCACAGGAGCCCTCCCCACCCTCACCGCCGGTTAGCCTCATAAGCGCACTTGTTCGGACCCATGTGGACTCCAACCCCTCCATGTCCGCTTTGGACTACTCCAGATTCCAGGCCAACCCTGACTACCAAATGACTGGAGACAACACTCAGCACATCCAGCAGTTCTATGATCTCCTGACGGGCTCCATGGAGATCATCCGGGGCTGGGCGGAGAAGATCCCCGGCTTTTCTGACCTATCGAAGCAAGATCAAGATCTCCTCTTTGAATCCGCCTTCCTTGAACTTTTTGTCCTGCGGCTGGCGTACAGGTCCAACCCAGTGGAAGGCAAACTTATTTTTTGTAATGGAGTGGTGTTACACAGGCTACAGTGCGTCCGTGGATTTGGAGAGTGGGTGGACGCTATCGTGGACTTTTCTTCCAACTTGCAGAGCATGAACATAGACATCTCAGCGTTCTCCTGTATCGCAGCTCTGGCGATGGTAACAGAGCGACACGGGCTTAAGGAACCCAAGAGAGTCGAGGATCTCCAAAACAAGATAGTCAACTGCCTCAAAGATCAAGTGACATTCAATGGCGGTGGATTGAATCGTCCCAACTACTTGTCAAAACTCTTGGGAAAGCTCCCTGAACTGCGCACACTATGTACCCAAGGTCTGCAGCGTATCTTTTACCTAAAACTAGAAGATCTAGTCCCTCCGCCAGCAATAATTGACAAACTTTTCCTCGACACCCTACCTTTCTGAGTCTGACTCGATGGCGAGACCTCAAAGAACTTCCAAAAGACTGTTTGTGAGTCAGACTTGACAGATTTTTAACGTTATTATTTCTGCAAGCTCCTGTAGTCTAATAGAACAACAGTACCCTATTATGAGTAAGgatttatgaaaaaagaataataggaggaagagacagagtgTGATTGCTGTGTAGGCCTTTTAATACTTTGATTGCCAAACGAGTGAATCATCACGGGGAATTTCTCTCCGGTGGACAAATTGTCAACAAAGTTAATCCGGTTTTACAATCActtactgtttatttaacatCGGCTCTACTGATTCAGCATACTCATATGTAATATATTCCATTTATatatatgaacacacacaaacacacaaacagagacacacacacaaacacacactgtatattatGATAGATTATGTGATGCCTCCAGTGCATCGGTTTATAACATGTGTACAAAGTTTGTTATAATGAAAAgatttaattttcttttcttttctgactCGTGCCTATGTGTTTCTGACAGGATCCCAAAAAGTATCCAGAAAAGACAACGCATGTTctagttttcttttcttgtttccccctttttcttttcttttataggCACTTGCTGAGGTGAtgtctatatataatatataccgGACACTATGTAGTCTGCTAGATTTGATACAGATTCGTAGTTATGGCACTCATTTTATGTATGACGCATATGTGGAAAAATATCTCATCTGTATAGAAAATGAGGGACCCATGGTGTTTGTAAAACTGTCAGACATTCCTTGTTTGTATGTGCTGTAAGTATTGTTGCTGTTGAATATAAACGtttctatatatttatttctattgCCAAGAGCTACACTAAGCATGGTGCAATTTAAACGATTTCAAACCATCCAA

Function

symbol description
nr4a2 Enables sequence-specific double-stranded DNA binding activity. Involved in negative regulation of apoptotic signaling pathway; negative regulation of transcription by RNA polymerase II; and transcription, DNA-templated. Acts upstream of or within cellular response to extracellular stimulus. Located in nuclear speck. Implicated in Parkinson's disease.

NR:

description
PREDICTED: nuclear receptor subfamily 4 group A member 2-like isoform X1

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0021884 forebrain neuron development biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08558 NR4A2, NURR1; nuclear receptor subfamily 4 group A member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817077.1 True 2963 mRNA 0.47 8 15812684 15817665

Neighbor

gene id symbol gene type direction distance location
rprma rprm,LOC102780493 coding downstream 196827 15614674 ~ 15615857 (-)
prpf40a NA coding downstream 226733 15567999 ~ 15585951 (-)
glb1l glb1l,LOC100708354,LOC102776574,LOC102302597 coding downstream 380171 15426799 ~ 15432513 (-)
LOC120569293 LOC104943022,LOC104919017,LOC103370185 coding downstream 394774 15414619 ~ 15417910 (-)
LOC120569292 LOC103370192,LOC103461666,LOC104943023,LOC100710321,LOC105937152 coding downstream 398905 15411570 ~ 15413779 (-)
LOC120570325 NA coding upstream 92281 15909946 ~ 15911626 (-)
LOC120569256 cytip coding upstream 98234 15915899 ~ 15919288 (-)
LOC120570316 acvr1c coding upstream 102938 15920603 ~ 15941311 (-)
LOC120570317 acvr1 coding upstream 127198 15944863 ~ 15969969 (-)
LOC120570319 ccdc148,LOC102793443 coding upstream 163709 15981374 ~ 16014154 (-)
G124146 NA non-coding downstream 307972 15502748 ~ 15504712 (-)
G124136 NA non-coding downstream 336536 15475258 ~ 15476148 (-)
trnak-uuu_17 NA non-coding downstream 395412 15417200 ~ 15417272 (-)
G124014 NA non-coding downstream 616466 15178318 ~ 15196218 (-)
G124001 NA non-coding downstream 688739 15116194 ~ 15123945 (-)
LOC120569338 NA non-coding upstream 46867 15864532 ~ 15901689 (-)
G124304 NA non-coding upstream 284491 16102156 ~ 16102355 (-)
G124324 NA non-coding upstream 462919 16280584 ~ 16280878 (-)
G124346 NA non-coding upstream 504820 16322485 ~ 16322657 (-)
G124350 NA non-coding upstream 527623 16345288 ~ 16357884 (-)
G123960 NA other downstream 818895 14984485 ~ 14993789 (-)
G123886 NA other downstream 1018187 14784561 ~ 14794497 (-)
ikzf2 ikzf2 other downstream 1610955 14175814 ~ 14201729 (-)
G123481 LOC106675207,LOC106674584,LOC106676400,LOC106674915,LOC106675345,LOC106676354,LOC106674636 other downstream 3192869 12619353 ~ 12619815 (-)
LOC120570668 LOC103354235,LOC105936145,LOC100692075,LOC108240393,LOC104918665 other downstream 3567679 12232420 ~ 12245005 (-)
G124303 dapl1 other upstream 281613 16099278 ~ 16101593 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other upstream 390025 16207690 ~ 16222736 (-)
gcgb gcg other upstream 560823 16378488 ~ 16380765 (-)
LOC120570068 LOC103362129,LOC101485094 other upstream 563585 16381250 ~ 16389894 (-)
fastkd1 fastkd1,LOC102780871 other upstream 1217708 17035373 ~ 17042372 (-)

Expression


Co-expression Network