rpl8 (rpl8,LOC106586796,LOC107595836)


Basic Information

Item Value
gene id rpl8
gene name rpl8,LOC106586796,LOC107595836
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24030441 ~ 24033769 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817090.1
GCTGGTAAATAACGCCgtatgtgtctctgtttcaGTACACGATGGGACGTGTAATCAGGGGACAGAGAAAAGGTGCGGGCTCCGTGTTCAAAGCCCACGTCAAGCACAGAAAAGGTGCCGCTAAACTCCGTCACATTGACTTCGCTGAACGCCATGGTTACATCAAGGGGATTGTGAAGGATATTATCCATGATCCCGGCCGTGGTGCTCCCCTGGCCAAAGTGGCCTTCCGTGACCCATACCGCTTCAAGAAGAGGACTGAGCTCTTCATCGCTGCTGAGGGCATCCATACTGGACAGTTCATCTACTGCGGCAAGAAGGCTCAGCTGAACATCGGCAATGTCCTGCCCGTTGGCACAATGCCCGAGGGAACCATCATCTGCTGCGTGGAAGAGAAGCCCGGTGACAGAGGCAAGCTGGCCCGCGCGTCAGGAAACTACGCCACCGTCATCTCCCACAACCCTGAGACCAAGAAGTCCCGCGTCAAGCTCCCCTCAGGCTCCAAGAAAGTTATCGCCTCTGCCAACAGAGCTGTTGTCGgtgTGGTTGCTGGAGGTGGTCGTATTGACAAGCCCATCCTGAAGGCTGGTCGTGCCTACCACAAGTACAAGGCCAAGAGGAACTGCTGGCCACGTGTCCGTGGTGTGGCTATGAACCCCGTTGAGCATCCCTTCGGTGGTGGTAACCATCAGCATATTGGCAAACCCTCAACGATCAGGAGGGATGCGCCCGCTGGTCGCAAGGTCGGTCTTATCGCTGCCCGTCGTACAGGCAGACTGCGTGGAACAAAGACCGTGCAAGAGAAGGAGAACTAAATCTGACTTTCTTgataataaaaatgtgttccaAAAGA

Function

symbol description
rpl8 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL8 (ribosomal protein L8).

NR:

description
PREDICTED: 60S ribosomal protein L8-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02938 RP-L8e, RPL8; large subunit ribosomal protein L8e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817090.1 True 853 mRNA 0.55 5 24030441 24033769

Neighbor

gene id symbol gene type direction distance location
med14 med14 coding downstream 56751 23958247 ~ 23973690 (-)
si:ch211-269e2.1 LOC103357720 coding downstream 78750 23928533 ~ 23951691 (-)
shox shox,mog-12 coding downstream 204628 23817012 ~ 23825813 (-)
fgf14 fgf14 coding downstream 380826 23538738 ~ 23649615 (-)
nalcn nalcn coding downstream 537103 23398523 ~ 23493338 (-)
cerkl cerkl coding upstream 55540 24089309 ~ 24125727 (-)
neurod1 neurod1 coding upstream 96249 24130018 ~ 24134141 (-)
dnajc15 dnajc15 coding upstream 264527 24298296 ~ 24302866 (-)
ccnyl1 ccnyl1,LOC104923590 coding upstream 347818 24381587 ~ 24401907 (-)
creb1b creb1,LOC107389684 coding upstream 368844 24402613 ~ 24418003 (-)
G126606 NA non-coding downstream 24781 24005059 ~ 24005660 (-)
G126597 LOC101470276,LOC102292608,LOC102197480,LOC100692635,LOC103357839 non-coding downstream 76071 23953403 ~ 23954370 (-)
G126535 NA non-coding downstream 316484 23713486 ~ 23713957 (-)
G126534 NA non-coding downstream 317171 23711987 ~ 23713270 (-)
G126533 NA non-coding downstream 320126 23709174 ~ 23710315 (-)
G126673 NA non-coding upstream 144688 24178457 ~ 24180149 (-)
G126676 NA non-coding upstream 147202 24180971 ~ 24182844 (-)
G126686 NA non-coding upstream 164110 24197879 ~ 24198556 (-)
G126695 NA non-coding upstream 169847 24203616 ~ 24203991 (-)
G126727 NA non-coding upstream 243409 24277178 ~ 24277430 (-)
si:ch211-218d20.15 LOC104960513,LOC101470276,LOC102197480,LOC102292608,LOC107099189,LOC100692635 other downstream 73235 23954846 ~ 23957206 (-)
gpr18 gpr18 other downstream 906533 23110033 ~ 23123908 (-)
klf5b LOC104962226,LOC103357491 other downstream 1062540 22962199 ~ 22967901 (-)
scel scel other downstream 1364969 22655579 ~ 22665472 (-)
katnal1 katnal1,LOC106527129,LOC104958633 other downstream 1401326 22615496 ~ 22629115 (-)
cnga4 cnga4,LOC103356095 other upstream 637453 24671222 ~ 24679011 (-)
G127032 neb other upstream 1664959 25698728 ~ 25701551 (-)
G127046 neb,LOC100194727 other upstream 1691305 25725074 ~ 25740126 (-)
arhgap20 LOC103357161,LOC102081671,LOC104942835 other upstream 2167393 26201162 ~ 26259576 (-)
gjb8 LOC103391957,LOC104941692,LOC103357168 other upstream 2469790 26503559 ~ 26508638 (-)

Expression


Co-expression Network