col4a1 (col4a1)


Basic Information

Item Value
gene id col4a1
gene name col4a1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20341286 ~ 20389402 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817124.1
CTCGGACAAAGATGCTGCCTAACGTGCTGAACGTGCTCTGCCGATAAGCTTTAAGAGTTACCTGAAGAAAGAAGACAAGAAGCGACCAACAGGTGGTTGTTTGCGGGCACTCTGCACTGTTGCGCACACAGTTTCGACTGCGCACCGCCACAATGCTGTTACCGTCCGGCACCCTGTTACTGCTGGCGGCTCTCTACTCAAGTGTAGACCTGACAGGGGCTGAGGGCTGTGGGACATCATGTGGAAAATGTGACTGCAGTGGTGTGAAAGGAGCAAAGGGTGAGCGTGGATTTCCTGGTCTTCAAGGTAATATGGGATTTCCAGGGATGCAGGGACCTGAAGGGCCTCCAGGACCAATGGGCCCCACGGGAGGTCTGGGTGAACCTGGAGCTCCTGGACTGAAAGGAGTGCGGGGTCCTCCTGGTCTGCCAGGTTTCCCAGGAAACCCGGGACTACCAGGCATCAATGGAAATGACGGCCCACCAGGTTCGCCAGGTATCCCAGGATGCAATGGGACTAAAggagATAGAGGAAGGGATGGTACTCCTGGTTTTGACGGTCTTCAAGGACCTCCTGGCATCCCAGGACTTCCTGGAATGAAGGGTGACCCTGGTGGTGTGATCGGAATTGTTCCCCTGAAAGGAGACAAAGGATTCCCTGGAACACCTGGATTACCtGGATTGAGTGGAATTCCTGGACCTATTGGACCTCCAGGGCCTCGAGGCTATCAAGGACCAAAAGGTGATCCTGGGCCCCCTGGCCTCCCTGGAGAGAAGGGTGACAAGCTGGCCTTTGTGAGTGAGAAAGGAGACAAGGGTGACCGAGGATATGATGGCCCACCTGGCCCTCCTGGACTTCCAATGGGAGTGGAAGGATCACATATCACAGTGCACGTACCTGGACCAAAGGGCGACAGAGGACTTCTAGGAGACAAAGGAGACAAAGGCCAGTGCATCCTGCATCAAGCTGGTGTCAAAGGTGAACCCGGCCCGTCAGGACCAAGAGGTAAACCTGGAAAGGATGGAGAAGACGGGCTGAAGGGAGAAAAAGGCTTCCCTGGATCTTACGGACACACCGGTTCCCAGggtgaaaagggagaaagaggacCACCAGGTCACGGTAGTGGTTCCCCTGGTGCTCCCGGTCCTCGTGGTCTCCCAGGGTTAAATGGAGAAAAAGGTTTTCCTGGTCCTCAGGGAGAGGCAGGTCCTCCAGGACGGCACATTGAAGGGCCTCGAGGAGAGACGGGTCAGAAGGGAAATGTTGGGGAGAAAGGAGACAGTGGTTTAGAAGGAGAGTCTCTTGTTGGACCTCCGGGACAACCAGGAAACATTGGACCACCTGGACCACCTGGACCACCGATTGATCCTAATGAATGTGACATTGAGAAAGGAGCTCCTGGCCCACCTGGACCTCCAGGGTTACAAGGGGAATTGGGACAGAAGGGTGACAGAGGTGACACCTGTGTTCAATGTGAAGGCTTCGGCCCACCTGGATTACCTGGCCCCCAAGGCCCTAAAGGAGATCGAGGACCTCCTGGGCTAGTAGGGGGGAAGGGAGAAAAGGGTGGATTTGGCCCTCCTGGACAACCTGGTAGACCTGGTTCTGTAGGCTCCCCTGGGTTGATTGGAGCCCCTGGTGCTGTTGGTGAGCCAGGGGACATTTTCACAGGTACCGGTCTCAAGGGGGACAAAGGTCTGCCTGGTGTTCCTGGTTCCCCAGGGTCGCCAGGGAGAGATGGACAGCAAGGGAGAGATGGCCTCCCAGGTATACCTGGCTTCAAAGGAGAaccaGCCAAAGAGGGCATCAAGGGTGAGCGTGGACCTGATGGGGACCCTGGTCTTATTGGGCCTCCAGGAGAGAGGGGTCCACCGGGCCTGCCAGGCTTCGGGCGACCAGGAGAGCCTGGAGAGAAGGGCAGTCAGGGGAGACCAGGCATTCCTGGCCATCCTGGACCATCTGGTGCAAAAGGTGAGCCAGGTAAAGGTGTGAGCACTCCTGGACCTCAGGGAGTACCTGGAGTACGCGGAGAAAACGGCATACCTGGACTTCAAGGCGACAGAGGCCTGCAGGGAGACCCAGGTTTGCCAGGTTTCCCTGGAGAGAAGGGGGAACACGGACCCGCTGGAATTGGATTTCCAGGTCCTACTGGTCCGAAAGGAATCAGTGGAATTCCAGGAGCTCCAGGATTACCAGGAGAGCCAGGAAGACCAGGACAGGATGGCTTGACTGGAAGAACTGGTACACCTGGACAAAAAGGTGAACCAGGGCGAGGTCTTCCAGGCCCAAAAGGTTCACAGGGCCCCCCAGGAATTACTGGTTTCCAGGGAGACAAGGGTGGTGTTGGACTACCTGGTATTCCTGGACGAGAAGGCCAGACAGGACCCCCAGGACCTCAGGGAGTCAAAGGTGACTTAGGACCCCCGGGACCTCCTGGACTGGTCGGCTTACCAGGTGCTCCAGGAAAAGGTTCCCCTGGAGCCCCCGGGCCACAAGGACAAGCTGGAGAGCCTGGACCATACGGTAGGGAAGGTGTAAAGGGAGAAAAGGGCTACCCAGGTCCTCCTGGTCTGGACATGCCGGGGCCTCAGGGAGAGAAGGGAACCCCCGGATTCCCAGGAAGCCCAGGTCCTAAAGGACTGCCAGGGCAGCAAGGCCTACCAGGCCGGGACGGACTGATTGGAAACCAAGGTTCTAAAGGTGAAATGGGGGTAATGGGGACACCAGGAGTACCAGGATTCCCTGGACCACCTGGTACACCTGGATCTCCTGGACTAAGAGGTGATCCCGGCATTACGGGACCAAGAGGCAATGATGGAGAGACTGGAGCTAAAGGAGAAAGGGGAGATCGAGGTCTTCAGGGACCTCCTGGGAACATGAGCGAAGTTGACATGGAGCACATGAAGGGGGAGAAGGGAGATACTGGAAACCCAGGTGACCCTGGGTTCACTGGAGACAAGGGCCACCGTGGACTTCCTGGTAACCCTGGAATGCCAGGCAAAGATGGAGAGCCTGGATTACCTGGACAACCTGGTGAGAAAGGAGACCCTGGTTTCCCCGGAGAGCCTGGCGGTAGGGGACAACCTGGACAGAAGGGCGCTGTAGGAGAGATGGGAATCCCAGgtccGTCTGGTCCAAAGGGTTCTAAAGGAGATACTGGTACACCGGGACATCATGGATTCAGAGGCACAGATGGACAGAAAGGAGACAAGGGAACAGCTGGAGTCCCAGGTATTGGGCTCCCAGGACATCCAGGAGAAAAGGGTCAGACAGGCCAGCCAGGATTCCCAGGACCACCAGGAGAGAGGGGACTGAAGGGTCTTGAGGGTATGCCTGGCAAGCCAGGACTGCAAGGAGCCAAGGGAGACAAAGGAACCATCGGGTATTCAGGTCAGCCAGGTAGACCAGGCGAGAAGGGTATCCCTGGGCTGCTGGGGTCTGTAGGAGAAACAGGTCGAGATGGTCGGCCTGGTGAAGGGGGCTTGCAGGGACCTCCTGGTGTTCCGGGAGAAAAGGGAGAACCTGGAGTGGATGGCATCCCTGGATCAtcaggggagagaggagacccAGGTGCACCCGGCCGAGGTTTCCCCGGACCACCTGGAGTGCTTGGTGGCAAAGGTGACAAAGGTAGCCCTGGCTTCCCTGGCCCTCCTGGTCATCCAGGTGTCTCTGGTATCAAAGGTGACAAGGGACTTCCAGGCTCACAGGGAGCCCCAGGTGAGACAGGAGAGATGGGGCTCCCTGGTATCTCTCTGGAGGGCCctaagggagagaggggagaaacaGGACAACCCGGAGAAGCAGGATCCTCAGGAGTACCAGGACCCTCCGGTGTGCCAGGTAGAAACGGCCAAAAGGGAGACAAAGGAGACCAGGGTCTCCCTGGTTTCCAGGGAGAGTCAGGACATAAGGGTGACCCTGGAGTTCCTGGACTTCCTgGACAATCTGGCCTTCCAGGTATTGATGGAcagaagggagagaggggattGCAGGGTGTCCCTGGCTTCCCAGGTACAAGGGGTAATTTCGGGGACATTGGATTCAAAGGAGAAATTGGAGACCGAGGATTCCCAGGagaaaaggGCAATGTAGGCCCCCCTGGTCCCCCCGGCCCCAGCATCTCCATCAAAGGAGACATTGGGTTCCCAGGGCCTCATGGCCTCCCGGGACCCCAGGGGCCATCTGGGCTCCCTGGACAGAAAGGACAGCAAGGTGTGACAGGTATTCCAGGGCCAAAAGGTGAAGATGGCATTCCTGGATATCACGGTCAGCCTGGGTCCAAAGGAGATCCTGGCCTTCCGGGGCCACAGGGACCCAGAGGACACCCTGGCCCCCCAGGACCTGACGGTGTTCCAGGTCAAGTGGGTCTCCCCGGCCCCTCCTCCATGGATCACGGGTTCCTGGTAACCCGTCACAGCCAAACAGTGGAGGTTCCACAATGTCCTGAGGGAACCTCGCTCATATATGATGGCTACTCCTTGCTCTACGTACAAGGCAACGAACGCTCCCATGGACAGGACTTAGGTACGGCAGGCAGCTGTCTAAGAAAGTTCAGCCCCATGCCCTTCCTGTTCTGTAACATTAACAACGTGTGCAACTTTGCCTCCCGTAACGACTACTCCTACTGGCTCACCTCCCCTGAGCCCATGCCCATGAGCATGGCACCCATCACTGGTGAAGGCATCAAACCCTTTATCAGCAGgtgtTCTGTGTGTGAAGCCCCAGCGATGGTGATAGCAATTCACAGTCAGACCATCATGATCCCACCATGCCCTCACGGCTGGGACTCTCTGTGGATTGGCTACTCCTTTGTCATGcaCACCAGTGCTGGTGCTGAGGGATCAGGCCAGGCTCTGGCCTCTCCTGGTTCCTGCCTGGAGGAATTCCGCTGCGCGATCAGTGCTCCATTCATTGAGTGTCACGGTCGTGGAACCTGCAACTACTACGCCAACTCCTACAGCTTTTGGCTCGCCACCATTGAAGACAATGAGATGTTTACGAAACCTGTCCCCACAACGCTAAAAGCAGGCAATCTCCGAACACACATAAGCCGCTGTCAGGTGTGCATGAAGAGGACATAAACCCCAACACCAGAGTCCTCCTTCCCAATCTGCTAGCAAAACCGCGTGCGCTGATGTCCTTGACTTGGCTTAACGTGCTGTTTTCAAACAATGGTGCTATTTCACTGCATGTGTGAGGGGACAGGGACAGAGATGTGGTTTGCAAAACAGCCGGAGATTGAACATTACAAACCAGAACACAGAGACCAAGCGGCCTTTGCTCCATGCAGAACACAACATGATCACAACATGTCTCTAAAGAATTGCACCCAGTTTACCACTGCACTGAATACATGCCCCCTAAACGGGTAAACTGGTGTTCATTTTGTGTGAGTCAGGTGCTATTCAATTACTTACTTATCTGCCTtattccattttgtttttttcttctccctaCCAATGCCACAGCATTCAAAGATTATAGCCacatattattatacattttaacTAATACTAATGTAAAGGATGGGACTTACCACTGGTTACAGACGCTTGCCATTTGCTAAATCACCGTAATGTTATTGACACAGATATATAACTATCACTCTGTTGTAAATATAATGCATTCCTCTCTAACATAGTTCAACATACTCTCCTCAGGTTATTATTGAAATACTTTGTGTGTTATTAagtccatttttatttataagaTTTATGAGAATATGTTGGACTTGATTGTATCTGAGATTCCATTGATCCAAAACCAGTATTTCAACGTCTGACAATCAGCGCCTTATTAACATACAAAACAGCACTGAAAGAGCattagcgtgtgtgtgtatttgtttgagTGTACATATCTGAATGGATTCGAGCTGCTTGGAAGTGTTGTGCTTTTTGTGATGTCTGCATATATATTGTTGCACAACCCTGTTGTTAACATAATCCCAAACAGATGCACAAAAtgaaatagacaaaaaaaacttttctttaCCTTTACTCTGTCAGAACATTGTGTTTGGCAGCGTGTGTGTTAAAGGATTTACTCTTCTCACATTACATGAATCAAATGTTTCTGATCCCAAAGAAATGCACATGTATATATAATTACACATGACATGTACTTGCTATTCTGCTCATGTACTTGACTTGTTCCCGTTTGTGAATTGCTTTTGTTATTCCTGTTGGTTTAACGCAAAACCAAGAGTGAAGGGTCATCACATCATTGTTATGCATTAgagtaaaacacggacagatgACGAGGACTGTATTTATAAGTGCAAGTTTAGATGCCTTAAAAGGTCTTAACAtaggtttgtgttttttctttcatatacagtatttggaGATAACATATGTCGTAATCAGTTGGAGGAAGGCCTCTTGGACCCCAAACATAGTTTCTGTGTCCCTTTCAGagctatttaaaaatgcaagcTATTGCTACTGTTACAGTTACAGCAGTTACTCTACACTGACCGTAACCTGTTTTTGTTAGTGTTGTGTGCTTGGTTGTGATGAAATGCTCCATGAAGTACAGTATCAGGAGTAGTCACTTGATTACTGTGGGGAtcatcttaaataaataaacaaacaaacagaacataacaaatttcattttatattttccaGAACCCATACTGTGCAATTCCTGCAATAAAGGTATTTGTAGAATATTCTTCCTAA

Function

symbol description
col4a1 Predicted to be an extracellular matrix structural constituent. Predicted to be located in basement membrane; extracellular region; and membrane. Predicted to be part of collagen trimer. Is expressed in several structures, including cardiovascular system; eye; hypodermis; optic fissure; and paraxial mesoderm. Human ortholog(s) of this gene implicated in COL4A1-related familial vascular leukoencephalopathy; myocardial infarction; and retinal arterial tortuosity. Orthologous to human COL4A1 (collagen type IV alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(IV) chain

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817124.1 True 6689 mRNA 0.52 53 20341286 20389402

Neighbor

gene id symbol gene type direction distance location
irs2b LOC104955106,LOC103372228 coding downstream 24994 20299081 ~ 20316292 (-)
LOC120569358 fam155a,LOC104934532,LOC103370067,LOC102785965 coding downstream 222976 20026079 ~ 20118310 (-)
pdzk1 NA coding downstream 382422 19953230 ~ 19958864 (-)
zgc:113337 cd200,LOC103369899 coding downstream 397376 19934150 ~ 19943910 (-)
cfap91 NA coding downstream 427566 19908494 ~ 19913720 (-)
rab20 rab20 coding upstream 82205 20471607 ~ 20476349 (-)
ube2al ube2al,ube2a,LOC105934920,LOC104955100,LOC103021436,LOC103029486,LOC108259060,LOC107552373 coding upstream 102764 20492166 ~ 20498871 (-)
ankrd10b ankrd10,LOC102292027 coding upstream 110051 20499453 ~ 20515203 (-)
cbsb NA coding upstream 200386 20589788 ~ 20611661 (-)
u2af1 LOC103352857,LOC103391595 coding upstream 240688 20630090 ~ 20636605 (-)
G125605 NA non-coding downstream 10571 20330508 ~ 20330715 (-)
G125551 NA non-coding downstream 109226 20230085 ~ 20232060 (-)
G125543 NA non-coding downstream 192107 20147416 ~ 20149179 (-)
G125539 NA non-coding downstream 196537 20143583 ~ 20144749 (-)
G125524 NA non-coding downstream 347965 19991408 ~ 19993321 (-)
G125658 NA non-coding upstream 195246 20584648 ~ 20584932 (-)
G125694 NA non-coding upstream 277644 20667046 ~ 20667405 (-)
G125701 NA non-coding upstream 294493 20683895 ~ 20684410 (-)
G125703 NA non-coding upstream 297294 20686696 ~ 20686913 (-)
G125708 NA non-coding upstream 302495 20691897 ~ 20697240 (-)
si:ch211-214p13.7 NA other downstream 417551 19921268 ~ 19923735 (-)
LOC120570223 NA other downstream 545066 19790052 ~ 19796220 (-)
si:ch211-214p13.3 NA other downstream 572700 19751701 ~ 19768586 (-)
G125326 dopey2 other downstream 743765 19595929 ~ 19597521 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other downstream 1082440 19231987 ~ 19258846 (-)
G125619 col4a2 other upstream 69760 20459162 ~ 20461629 (-)
G125620 col4a2 other upstream 74707 20464109 ~ 20467185 (-)
LOC120570047 dynlt3 other upstream 345148 20734550 ~ 20738320 (-)
G125842 NA other upstream 564259 20953661 ~ 20960064 (-)
LOC120569741 LOC104951940,LOC103391685,LOC103352881 other upstream 589599 20979001 ~ 20986633 (-)

Expression


Co-expression Network