rab20 (rab20)


Basic Information

Item Value
gene id rab20
gene name rab20
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20471607 ~ 20476349 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817125.1
CTCAGTTACTTTTTGAAGTTCAGATTCAGGCAACATAATGAGAATGAACTGACGCTGGATAGTTGAATCAACTTTCGTTCATATAATGGCGTTTGTAAGAGGAATTCGCGACCAGTCTGACAGTTTTACGAGCTAGACCGAGTTTCTTTTATACGATTAAGAGAGAGGATAGAGCGCCACTGGAGCGGGACGCGACCCAGCATCATGCCCAAGGTGTCGAAGATGAAGAAGCCCGACGTCAAGGTGGTTCTCCTGGGAGACATGAACGTGGGGAAGACGTCGCTGCTCCACAGGTACATGGATAGAAAGTTCAAAGACACCATCAGCACCGTTGGAGGGGCGTTTTTCCTCAAGCAGTGGGGACCTTACAATATCTCAATATGGGACACTGCCGGTCGGGAACAGTTCCACGGGTTGGGCTCAATGTACTGTCGAGGTGCTGCCGCTGTCATCTTCACGTATGACGTCACCAACTGGCAGAGCCTAGCTGAACTGGAGGAGCGCTTCCTGTCCCTGACAGATACTGCTAACCACGATTGCATTTACGCCGTAGTGGGCAACAAGGCTGATCTCACAGACCCTAAAGCCCAGCTGTCTCAGGACTCGGATGTGGCGTCTGAGGACCGAACTGAGTgtgaggaggagaggacagaaCCACAGGTGCTGTCTGCTTGCCCCACACCCCCGGCTTCCCCTGTTTCCTTCTCTAGGATAACGCTACACAAACAGGTCACCCCTGAGGATGCAGTGGCTTTTTATGGGAGAATACTGCGCTACAAGGGCCTGGAGGAAAAGAGCAGCCTGCCTGCAGAGAAAATGTGCTTCGAGACAAGTGCCAAGACGGGCTACAATGTGGACACTCTGTTTGAGGCATTGTTTGATCTGGTGCTTCCTTCCATCTTGAGAAAGAGAAGTGAGAACCAGGAGTCTCCTACAGTGGACCTGGAGGAGTGCAGAGGGGCCAGCAACAAGCGGGCCAGATCTGCCTGCTGCTAGGGGCTAGAGGCTGTTACCAGCAGAGACTTGTTTTTAACAAAGGACAATCAAGAGATTGGTCTGCGTACCGAATACATACTGTGATGGTACTACTTATTTGCCTCGACTGAAAACCAATAGCATTAATGACCTCCCAGTAACACAAACGCACATTCTTGCTAGCAGCTAGCATTCATAGTGTACGCTGACATTTGAAGGAAGGGAAATAAACGCATGTTGCGTTATCGCTCTATGCTTTAAAGCCTTTCAACCCAACGACTGAACCGCACTTGTATCCCAAAGATGTGCCCGTAGGCAAATAACACACATAAGAAGTCAACCACTGCTTTTTTGGACTGAGAATGTCACAAATTATCAGCACTAATTGTTAGGTGGGTGGCactgtttattattgttgtattttaaggtttccACAAATCACACTTTTGTtgtcttttatgttttgttactaGCATTGATACtgctctttatttttttggcacttttggaTCTTTTTTTAATGAGTGTTAATAAACCTGTCAAATTTTTAA

Function

symbol description
rab20 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system. Is expressed in pronephric duct. Orthologous to human RAB20 (RAB20, member RAS oncogene family).

NR:

description
ras-related protein Rab-20-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07911 RAB20; Ras-related protein Rab-20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817125.1 True 1526 mRNA 0.47 2 20471607 20476349

Neighbor

gene id symbol gene type direction distance location
col4a1 col4a1 coding downstream 82205 20341286 ~ 20389402 (-)
irs2b LOC104955106,LOC103372228 coding downstream 155315 20299081 ~ 20316292 (-)
LOC120569358 fam155a,LOC104934532,LOC103370067,LOC102785965 coding downstream 353297 20026079 ~ 20118310 (-)
pdzk1 NA coding downstream 512743 19953230 ~ 19958864 (-)
zgc:113337 cd200,LOC103369899 coding downstream 527697 19934150 ~ 19943910 (-)
ube2al ube2al,ube2a,LOC105934920,LOC104955100,LOC103021436,LOC103029486,LOC108259060,LOC107552373 coding upstream 15817 20492166 ~ 20498871 (-)
ankrd10b ankrd10,LOC102292027 coding upstream 23104 20499453 ~ 20515203 (-)
cbsb NA coding upstream 113439 20589788 ~ 20611661 (-)
u2af1 LOC103352857,LOC103391595 coding upstream 153741 20630090 ~ 20636605 (-)
LOC120569729 LOC103352860,LOC100709268 coding upstream 172919 20649268 ~ 20664884 (-)
G125605 NA non-coding downstream 140892 20330508 ~ 20330715 (-)
G125551 NA non-coding downstream 239547 20230085 ~ 20232060 (-)
G125543 NA non-coding downstream 322428 20147416 ~ 20149179 (-)
G125539 NA non-coding downstream 326858 20143583 ~ 20144749 (-)
G125524 NA non-coding downstream 478286 19991408 ~ 19993321 (-)
G125658 NA non-coding upstream 108299 20584648 ~ 20584932 (-)
G125694 NA non-coding upstream 190697 20667046 ~ 20667405 (-)
G125701 NA non-coding upstream 207546 20683895 ~ 20684410 (-)
G125703 NA non-coding upstream 210347 20686696 ~ 20686913 (-)
G125708 NA non-coding upstream 215548 20691897 ~ 20697240 (-)
G125620 col4a2 other downstream 4422 20464109 ~ 20467185 (-)
G125619 col4a2 other downstream 9978 20459162 ~ 20461629 (-)
si:ch211-214p13.7 NA other downstream 547872 19921268 ~ 19923735 (-)
LOC120570223 NA other downstream 675387 19790052 ~ 19796220 (-)
si:ch211-214p13.3 NA other downstream 703021 19751701 ~ 19768586 (-)
LOC120570047 dynlt3 other upstream 258201 20734550 ~ 20738320 (-)
G125842 NA other upstream 477312 20953661 ~ 20960064 (-)
LOC120569741 LOC104951940,LOC103391685,LOC103352881 other upstream 502652 20979001 ~ 20986633 (-)
tmtops2b LOC100693281,LOC102294429,LOC102792754,LOC101463828,LOC102207603,LOC103352886 other upstream 634838 21111187 ~ 21149005 (-)
ecrg4a Augurin-B,LOC103352889 other upstream 716559 21192908 ~ 21198088 (-)

Expression


Co-expression Network