LOC120569352 (LOC100691311,LOC104929831,LOC103373061)


Basic Information

Item Value
gene id LOC120569352
gene name LOC100691311,LOC104929831,LOC103373061
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4287338 ~ 4290947 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817223.1
GGACTGGACTTtggttttacttttattttctgtgaaaaaaaaaaaggtcagctGGCACAGCATCAGACTCTCACAACAGAGACGACATATACAGTTCGGAGTATAGCTGTTGCTATTTAACTGGAATAAAGGCTGACTACGGAATCAGGGCCGGAGGACATCCTTGGACTTTTTCTGTCTTGTCCATTTGTATTTTCTCAGTCTTTTGGAGTAAAGTGAACTTTTGGATGGGGGAAAAGCTCCCCAGGGTGCCAGGAGGAGCTCAGCACCGCAGGGAGACTTTGAGTAGACCTGTGCAGACGCTCAGGGTTAAGATGGTCCTTCTGGGAAGCTCTGGCGTGGGGAAGTCCAGCCTGGCACTGCGATTTGGCAAAGATGAGTTCAGGACTACATCACCTACTGTTGGCTGTGCCTACCTGACCCGAGTGGTGCATCTGAGTGACGTCACTCTTCGCTTTGAGATATGGGACACGGCAGGGCAGGAAAAATACCACAGTGTCACCCCACTTTACTACAGAGGAGCCCACGCTGCACTCCTGGTCTACGATATCAGCAAAAGGGAAACCTTCATCAGAGCTCAAGTGTGGCTCAAAGAGCTTGAGAAACAGTACATCCCAGGATCTACGGTCATATGGCTGGTGGGCAACAAGGGAGATCTGGCACAGGATCGACAAGTCTCAGTGCagGAAGGACAGAGTCTGGCCAATGACAGGGGCTTATTTTTTACAGAGACATCAGCCCTGTCAGGGGATCAAATCTGCCAGCTGCTACTAGCTGTAGCCCACAGAGTGTACGAGTGTATTGGAGCGCAGCAGGGAGGGCTTTCAGAGTGGAAGGAGACGCCACATGTGGATCTGCATCGTGGAGACACGTTCAATCCTTTTGTATCCTGCTGCAAAGTTGGACCCTAACCTCTGGCACTGTCAAATGAATTGCttcttgtgtttgtttctctgtcttCATCATTTCAAAGCTGCACTGGGTAACACAGCCGATATACAAAAAACACATCTCCGAAGGCAAAAAACAAATGCTGTTAGATTCTGAATCTGTGGTTCTCTGCCTGTTTAATTCTACTAACCAGTGCACTGACAAAACACTGCATTTATCCTGCAATTTGCATTGTGGTGGAAATGTAAACAAGGAATGGATTTCCAGGTTGTTTTACTTGAGGCTAAAAGCTTCTCAATACTTTTAATGCAGTATAAGTCCTTGGCTTTTGTGTTACAGTTGTACTAGCGATCTATCTACAAGAGTTCCATTTGTTGTACTGATTTTCCTCGGTGGGTAGGGTCAATGCCCtcagtgtgtgtctatatgCCAGATGTTGAACTGATACCAATTACGTTCATTCAGTGTCTCCTGCCTGTGATTCATCTGAGTGGAGATCCCCTGAGCACAGTTCCGTTGAGTGTGGTTCTCTAAATTCCCTTCTTTACAATATACGCCCTGTCCAGGGTAAcctaataatgataataaaaactttgaaagtATTTCCATAATTTGCTGGTCTGGAGATGGAAATGATTTAATAAAGACTGGGTGTCACTCTTTC

Function

NR:

description
PREDICTED: ras-related protein Rab-17

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07909 RAB17; Ras-related protein Rab-17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817223.1 True 1555 mRNA 0.46 5 4287338 4290947

Neighbor

gene id symbol gene type direction distance location
LOC120570037 LOC103373060,LOC108249332,LOC102294704,LOC102195324 coding downstream 95446 4176670 ~ 4191892 (-)
LOC120570036 NA coding downstream 110671 4168847 ~ 4176667 (-)
LOC120570035 NA coding downstream 120427 4165150 ~ 4166911 (-)
LOC120570433 NA coding downstream 138940 4146985 ~ 4148398 (-)
LOC120570296 LOC102797105,LOC102215387 coding downstream 275860 3857278 ~ 4011478 (-)
tyw5 tyw5 coding upstream 111449 4402396 ~ 4409649 (-)
c12h2orf69 LOC103370987 coding upstream 235253 4526200 ~ 4566116 (-)
gpr39 gpr39 coding upstream 428009 4718956 ~ 4763162 (-)
LOC120569766 slc35f5 coding upstream 482646 4773593 ~ 4797994 (-)
asnsd1 asnsd1 coding upstream 527647 4818594 ~ 4821932 (-)
G121908 NA non-coding downstream 252289 4034812 ~ 4035049 (-)
G121898 NA non-coding downstream 430495 3856439 ~ 3856843 (-)
G121894 NA non-coding downstream 434824 3851506 ~ 3852514 (-)
G121893 NA non-coding downstream 436481 3849224 ~ 3850857 (-)
G121878 NA non-coding downstream 586948 3425138 ~ 3700390 (-)
G121989 NA non-coding upstream 654 4291601 ~ 4291821 (-)
G122002 LOC103373060 non-coding upstream 95563 4386510 ~ 4398125 (-)
G122051 NA non-coding upstream 152523 4443470 ~ 4445118 (-)
G122086 NA non-coding upstream 392508 4683455 ~ 4684088 (-)
G122043 NA non-coding upstream 393427 4684374 ~ 4684626 (-)
col6a3 col6a3 other downstream 127199 4107999 ~ 4160139 (-)
steap3 NA other downstream 825635 3426024 ~ 3461703 (-)
G121877 clg16-21h2orf76,LOC101472530,LOC102207757,LOC108238817,LOC102789177,LOC103368446 other downstream 847672 3414399 ~ 3439666 (-)
G121832 NA other downstream 900873 3386067 ~ 3386465 (-)
G121794 NA other downstream 1012852 3273862 ~ 3274486 (-)
glsb gls,LOC100711430,LOC102197968,LOC101482051 other upstream 626712 4917659 ~ 4972611 (-)
G122404 NA other upstream 1721093 6012040 ~ 6014195 (-)
LOC120569614 NA other upstream 2349934 6640881 ~ 6681994 (-)
pcbp3 pcbp3,LOC100710924,LOC107660579,LOC103138153 other upstream 2491499 6782446 ~ 6871212 (-)
tmeff2a tmeff2 other upstream 2890984 7181931 ~ 7317632 (-)

Expression


Co-expression Network