rprma (rprm,LOC102780493)


Basic Information

Item Value
gene id rprma
gene name rprm,LOC102780493
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15614674 ~ 15615857 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817231.1
TAAAGCAGACATGCAGGTACTGTCTGGCTATTTAACCGCGGGTTGGTGGATTCATTCCACTCTGAAACTGGCTACAGACCACATGAAATCTCCAGTAATGCGATGCCAAAGCAGCTTGTTAAACTCCAGAAGTGCGCCACTGCCTGTCTGATCTGACGGAACTTCTTCAATTCagcgcctcctcctcctcatcatctttACTTTTCACTTGAAGACACATTTCTCAGGGATTGTTCCAGGCGCGTttccctctctgcctctcacATCTTTTGCACTGaaagttagattttttttaaaagtggaaATGAATAGCACCGGGTTCAACCAAACGGAGGGCGGACTGCTCAACAAGACCGAGGAGTTTTTTTGCTGCAACTTTTCCTCCGTGGTGACTGATAACGGCTTTGTGGCCGCCGCTCCAGATGAGAGGAGCCTCTTCGTCATGAGGGTGGTCCAGATAGCCGTCATGTGCGTGTTGTCCCTCACGGTGGTTTTTGGCATATTTTTCTTGGGTTGCAACCTTCTCATAAAGTCAGAAGGAATGATAAACTTTTTAGTAACGGACAGGAGACCGTCTAAAGAAGCGGAGGCAGTTATTGTTGGAGCCTACTGACTGACGAGGACCTTTATAGGCTAATGATTTGAATCAGATCTGAAGTCTGGTGGAGACAGAATGAAGACAAATGCGATTATCAACTGCCTAAACAAGCCCCTGTTTCCATATTGGTATTTAGAAAAACCTCAAAGGTAATAGCCCTGCTGGTGACTGCGTCTCACAGGTGTTCACCTTATTCCTTGTGGCTTTTAAATGCCAGCAAAGACGCATGCATCTTCAAGAGGTATTGTGCGTTTTAAGCCTCTTTGTTTAAAAAGTATTCAATCAAGCACTGTTGTACTTTGGAGCACCGTTTGTCATGCAGAACCCTTTGTCATGGAAGTGGCAAAGTATTCGCATTTGCTGCTTCAAAACACCCTCTCATGTTGCTAATGCAATGGAGAAATTAATGTttaaacatgtactgtatgttgtatgtgtttttgcatACAATATGCAATATATTAATCGGTGTATTTCTCTGGAATTTCATGGTGATAGTGTCTGCGTGGGCGGTGGAGAAAAAAAGCCCAACATGTATCCTGTTAATTGGAATAAATATGTTCTGTAATTAAAGTTTTCCTCTTAA

Function

symbol description
rprm Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within regulation of cell cycle. Predicted to be integral component of membrane. Predicted to be active in cytoplasm.

NR:

description
protein reprimo A-like

GO: NA

KEGG:

id description
K10128 RPRM; reprimo, TP53-dependent G2 arrest mediator candidate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817231.1 True 1184 mRNA 0.43 1 15614674 15615857

Neighbor

gene id symbol gene type direction distance location
prpf40a NA coding downstream 28723 15567999 ~ 15585951 (-)
glb1l glb1l,LOC100708354,LOC102776574,LOC102302597 coding downstream 182161 15426799 ~ 15432513 (-)
LOC120569293 LOC104943022,LOC104919017,LOC103370185 coding downstream 196764 15414619 ~ 15417910 (-)
LOC120569292 LOC103370192,LOC103461666,LOC104943023,LOC100710321,LOC105937152 coding downstream 200895 15411570 ~ 15413779 (-)
tra2b tra2b coding downstream 205203 15402680 ~ 15409471 (-)
nr4a2a nr4a2,LOC106586168,LOC104920078,LOC103363922 coding upstream 196827 15812684 ~ 15817665 (-)
LOC120570325 NA coding upstream 294089 15909946 ~ 15911626 (-)
LOC120569256 cytip coding upstream 300042 15915899 ~ 15919288 (-)
LOC120570316 acvr1c coding upstream 304746 15920603 ~ 15941311 (-)
LOC120570317 acvr1 coding upstream 329006 15944863 ~ 15969969 (-)
G124146 NA non-coding downstream 109962 15502748 ~ 15504712 (-)
G124136 NA non-coding downstream 138526 15475258 ~ 15476148 (-)
trnak-uuu_17 NA non-coding downstream 197402 15417200 ~ 15417272 (-)
G124014 NA non-coding downstream 418456 15178318 ~ 15196218 (-)
G124001 NA non-coding downstream 490729 15116194 ~ 15123945 (-)
LOC120569338 NA non-coding upstream 248675 15864532 ~ 15901689 (-)
G124304 NA non-coding upstream 486299 16102156 ~ 16102355 (-)
G124324 NA non-coding upstream 664727 16280584 ~ 16280878 (-)
G124346 NA non-coding upstream 706628 16322485 ~ 16322657 (-)
G124350 NA non-coding upstream 729431 16345288 ~ 16357884 (-)
G123960 NA other downstream 620885 14984485 ~ 14993789 (-)
G123886 NA other downstream 820177 14784561 ~ 14794497 (-)
ikzf2 ikzf2 other downstream 1412945 14175814 ~ 14201729 (-)
G123481 LOC106675207,LOC106674584,LOC106676400,LOC106674915,LOC106675345,LOC106676354,LOC106674636 other downstream 2994859 12619353 ~ 12619815 (-)
LOC120570668 LOC103354235,LOC105936145,LOC100692075,LOC108240393,LOC104918665 other downstream 3369669 12232420 ~ 12245005 (-)
G124303 dapl1 other upstream 483421 16099278 ~ 16101593 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other upstream 591833 16207690 ~ 16222736 (-)
gcgb gcg other upstream 762631 16378488 ~ 16380765 (-)
LOC120570068 LOC103362129,LOC101485094 other upstream 765393 16381250 ~ 16389894 (-)
fastkd1 fastkd1,LOC102780871 other upstream 1419516 17035373 ~ 17042372 (-)

Expression


Co-expression Network