twist2 (twist2,LOC103376110)


Basic Information

Item Value
gene id twist2
gene name twist2,LOC103376110
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 8327026 ~ 8330482 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817234.1
AAAAACATTAAGCAAAAAACTTCCTGCAGGAGGAGAAGCGTGCAAACCTCAAGTTCGAATCTGTTTCTTCTTAAAGCAAGAGACGCAGAGAGTGAGGCATCCTGACATTATTCCCCTCATCTTTACGGATATCTTCACTATTTTTGTAACCACGGCATCAAAGGTGGACAGCGTTTTTTCTGCTCTATCCCTGCATTTCTTCAAGAAAGAAATGGAAGAGGGCTCCAGTTCTCCGGTCTCCCCAGTGGATAGTCTGGTGACCAGCGAGGAGGAGCTGGACAGAAGGCAGAAACGCTTCGCGGGGAAGAGGAGACAAAGCAAAAAGTCCAGCGAGGACAGCAGCGGCGGCAGCAGCCCGGGTCCGGTTAAACGGGTTAAAAAGGCGAGTCCGAGCAGCAATCAGTCGTACGAGGAGCTGCAGAACCAGCGGGTCCTGGCCAACGTCCGGGAGAGGCAACGGACTCAGTCTCTGAACGAGGCCTTTGCGTCTTTGCGCAAAATTATCCCCACGCTGCCCTCGGACAAACTCAGCAAGATACAGACGCTGAAGCTCGCCTCCAGATACATTGATTTTCTCTGTCAGGTGCTGCAGAGCGACGAGATGGACAACAAGATGTCCAGCTGCAGCTACGTTGCGCACGAAAGACTCAGTTACGCATTCTCCGTGTGGAGGATGGAGGGCGCTTGGTCTATGTCAGCATCACACTAGCACCCAGAGACCTTCACTTACAATGCCAAAGCGACTGTTTACTACAAAGTATGAAGACCAAAGGGATTATTGAAGAACCCATCGACCTCAAAGGGCATGGCGAAGAGACGTAATGTGACCCACAACTACAGTACAAACTcttcgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcagagagaggggaaaggacAGACCTGCAATGTGTATAGCCCAAAGATGTTATAGCGCAAAGCTCTATAACGGTTAAAGCCATCCTTTAACCGTTTTTTTTAGAaggatatatatatttgttttccaAAGACTTTAAAccaaagtataaatatatataaataaatgcatattGTACATACCTGTGTAAGTACGCCTGTAAAGGGACCAATGCAATTTAGAGTCATTTGCTGCATGGATGTATTTCACCGACGTTCTTTAGCAAGTCTCCAAACTCCGTCCaatgtacatttttgtttttgcttatttattaaaaacacatatttTTTGAA

Function

symbol description
twist2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in developmental process and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including brain; cardiovascular system; mesoderm; notochord; and tail bud. Human ortholog(s) of this gene implicated in Barber-Say syndrome; ablepharon macrostomia syndrome; and focal dermal hypoplasia. Orthologous to human TWIST2 (twist family bHLH transcription factor 2).

NR:

description
twist-related protein 2 isoform X1

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817234.1 True 1245 mRNA 0.47 2 8327026 8330482

Neighbor

gene id symbol gene type direction distance location
LOC120569509 lct coding downstream 184544 8130816 ~ 8142482 (-)
cxcr2 NA coding downstream 234800 8088571 ~ 8092226 (-)
faima faim,LOC104925879,LOC101481285,LOC102793570 coding downstream 242190 8077912 ~ 8084836 (-)
parp14rs1 NA coding downstream 256349 8054315 ~ 8070677 (-)
esyt3 NA coding downstream 273862 8031688 ~ 8053164 (-)
LOC120570227 LOC104955246 coding upstream 10821 8341303 ~ 8344352 (-)
asb1 asb1,LOC102790951 coding upstream 56791 8387273 ~ 8397525 (-)
adarb1b adarb1,LOC101485294,LOC102308976,LOC100709054 coding upstream 111636 8442118 ~ 8582576 (-)
LOC120570417 NA coding upstream 254098 8584580 ~ 8585518 (-)
ramp1 ramp1,LOC100698743,LOC101467429,LOC102789017 coding upstream 371087 8701569 ~ 8771922 (-)
G122814 NA non-coding downstream 10300 8314022 ~ 8316726 (-)
G122802 NA non-coding downstream 134839 8191924 ~ 8192187 (-)
G122677 NA non-coding downstream 413708 7828932 ~ 7913318 (-)
G122660 NA non-coding downstream 702983 7623422 ~ 7624043 (-)
G122656 NA non-coding downstream 761596 7565214 ~ 7565430 (-)
G122820 NA non-coding upstream 51404 8381886 ~ 8382121 (-)
G122828 NA non-coding upstream 181588 8512070 ~ 8611863 (-)
G122830 NA non-coding upstream 274044 8604526 ~ 8612694 (-)
G122838 NA non-coding upstream 317375 8647857 ~ 8723582 (-)
G122858 map3k19 non-coding upstream 459835 8790317 ~ 8790556 (-)
tmeff2a tmeff2 other downstream 1009394 7181931 ~ 7317632 (-)
pcbp3 pcbp3,LOC100710924,LOC107660579,LOC103138153 other downstream 1455814 6782446 ~ 6871212 (-)
LOC120569614 NA other downstream 1645032 6640881 ~ 6681994 (-)
G122404 NA other downstream 2312831 6012040 ~ 6014195 (-)
glsb gls,LOC100711430,LOC102197968,LOC101482051 other downstream 3354415 4917659 ~ 4972611 (-)
traf3ip1 traf3ip1 other upstream 69103 8399585 ~ 8448430 (-)
ccnt2a ccnt2,ccnt2a,LOC104923135,LOC102200362 other upstream 463139 8793621 ~ 8803104 (-)
G122878 NA other upstream 668980 8999462 ~ 9000123 (-)
stxbp5l stxbp5l other upstream 2609571 10940053 ~ 11094619 (-)
thsd7ba NA other upstream 2950128 11280610 ~ 11467939 (-)

Expression


Co-expression Network