XLOC_004754 (BX469896.1)


Basic Information

Item Value
gene id XLOC_004754
gene name BX469896.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 26894321 ~ 26896616 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009402
CACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTCTTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAGGAATTCAACCAGATAGTTAGCAAAAATTATATTGGTCTCTTGATCATCACTGCCCACAACTGATTCAGATCTTCAGATGTTCAGGTCACAGAGAGGTCTCACTGGACAGATTTTTATCTACTACAAGATGTCAAGGCCTCTGACCTCACTGACATGCGAGGTGTTTTCATTTGAGTGCTTCCAGTAGTTTGAAGCAGTTCTTCAAAGCATGTTTTGCTTCAGATGATGGAGACTCAAATCAACATATGCTCGTTGGAATTCTTAACCGAGAAAATGACGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATCCCCTGTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAAACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCGTGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGACGCTGAAGGGTAAGATTCTGGCGTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACTGTGagttaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCGATAATACTACAATGTAATAATGTCTTGTGGTTGTTTATtatttggatatgtttgtaaaaaattattgaaatattttaaacaagtgttttaataagatttataacaataaatatcGACAAATTGTTATACAAGGC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0021546 rhombomere development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0048513 animal organ development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0035295 tube development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0031099 regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007423 sensory organ development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096707

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009402 True 840 lncRNA 0.39 5 26894321 26896616

Neighbor

gene id symbol gene type direction distance location
XLOC_004752 NA coding upstream 60129 26737431 ~ 26834192 (+)
XLOC_004750 arhgap12b coding upstream 168273 26621906 ~ 26726048 (+)
XLOC_004751 NA coding upstream 202270 26691819 ~ 26692051 (+)
XLOC_004749 si:dkey-148d16.5 coding upstream 282350 26608883 ~ 26611971 (+)
XLOC_004748 NA coding upstream 301023 26589644 ~ 26593298 (+)
XLOC_004755 msl1b coding downstream 125363 27021979 ~ 27028808 (+)
XLOC_004756 fbrs coding downstream 137978 27034594 ~ 27061336 (+)
XLOC_004757 srcap coding downstream 165104 27061720 ~ 27092286 (+)
XLOC_004758 ttll6 coding downstream 200219 27096835 ~ 27115412 (+)
XLOC_004759 hoxb8b coding downstream 220993 27117609 ~ 27120171 (+)
XLOC_004744 NA non-coding upstream 402348 26489353 ~ 26491973 (+)
XLOC_004738 CR932018.1 non-coding upstream 1246078 25648127 ~ 25648243 (+)
XLOC_004762 dre-mir-10a non-coding downstream 238253 27134869 ~ 27134967 (+)
XLOC_004777 NA non-coding downstream 1480414 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1721085 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 2036908 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 2116957 29013573 ~ 29013690 (+)

Expression


Co-expression Network