rab9a (rab9a,LOC104925019,LOC103392032)


Basic Information

Item Value
gene id rab9a
gene name rab9a,LOC104925019,LOC103392032
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19113405 ~ 19116298 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817375.1
TACGAACAGGTTTGGGGGTCGAGTGGATTTTGTCTCCGTGTGCAGCTGGGATGCTGGGAGAGAACAGCTAACTAAGCTGGCTGAACGTTACCTACATGGCTGCTCACATCAACATTAAACATATGAGCATGTGACCAAGGACTAGGGTCTACAGCACATGATCTGGACAAGTGGAGGAGGCCAAAATCAATCAGGGGTACATTATTTCAAAGTGGTCAGTCGGGAGTGAATAGCCATGACAACAAAGACATCCCTGCTTAAAGTCATTCTGCTGGGCGATGGTGGTGTCGGAAAAAGCTCCATCATGAATCGTTATGTTACCAACAAGTTTGATGCACACCTTTTCCACACCATTGGTGTAGAGTTCCTCAACAAGGAACTGGAGGTAGATGGCCACCAGGTTACCCTACAGATCTGGGACACTGCTGGCCAGGAGCGCTTTCGCAGCTTGAGGACTCCTTTCTATCGTGGCTCTGACTGCTGCCTGCTCACATTCAGTGTAGATGACAGCCAGAGTTTTCTCAACTTAGGCAACTGGAAGAAGGAGTTCATCTACTATGCAGATGTCAAGGAGCCAGAGAAGTTCCCATTTGTAGTCTTGGGCAACAAACTGGACGTTACAGAAAGGCAGGTGTCTTCTGAGGAGGCTCGGCAATGGTGCCAGGAGAACGGTGACTACCCCTATTATGAGACCAGTGCCAAGGATGCCACCAATGTAGCGGTGGCCTTCGAGGAGGCAGTGCGTAGAGTGTTGGCATTGGATGAAAGAACGGACCACCTCATCCCCACAGACACAGTTAAGCTTCACAGAAAGCCTCGCTCTGCTACCACTTGCTGTTCATAACATTCAGGGGTTATCACTAACAATACATTGCTGTTATGCCTGTTATGTGATGAGGCTGTATGTTTACAATGCTGTAATAACATCttatttaaacaaattatgCTACTGGCTTTATGATTTGTTATACTGTTGAAGGTTTGATAATGCTAATAGTCTGACTTCTATTTGAAGGGAAAGAGGAAACACTAAATTCATCCCAGtgtaattacaaaaaacatgaaatcaCTGAATCATTTACTCAGCTCTGCCACAGTTCAAAAGTCAGGCTTTGGATGGGTAGCAGAAAAATAAACTATATTTTGTGTTGGCCCAAAACTGGGAACCAAAAATCTGTCATGATAAAACAAAGGCAATATATTTGAAAAGTTTCACTTCCCTCTCAAATGGTTTTCTGTCATGGATGCATATTATAATGCGACTCTTAAAACTACTACCTGTGTACTACCTTGGGAGTGCGATCATGAAAGGGTTACTGAACTTTACTCCTAAATGTAATAACACAGTGATGgcctatatatttatatacagaaAATAACTGCCTAATTAATTTATGCAGCCCAATAACATTATTTGTGAGAATTATGAAGTAGCTAAGGCACTACTATGTGTAACTAACAAATTGAGGCTTGTATTATTGCACCTTTAGGTCTTCTTCGTGCACATTTTGCTTAGTGAATAGATTGTATGCTGAAAGCACTGAGGGACAAGATCCCCAATAGAAGATCAATATTAAAGCAAAGTTAACATGCATGGCATATGGTGTATTTAAGTTTCTGGAAACATTTGTATTTTGTAAACCGTTTTTACCTTACAAATCACTGAATCAATGTTGCCTTGAGGACAGTGCATTGGAATAGCAGTCATGATTGAGTAAACTGTTATCCTCATTGTtgggtttgttttaaataatgATTTTGATCTTTAAAGCACTCTATTAACATTTTTATACTTGCAGTTTAAAGTCTTTCCCCACAGCTTAATATTTACAATGGTGAACCATTTATTTACCTTGTTTCTTATTCACATTTCATTCATATTCAAAGTTGTATTACTGGTATGGCAAATGATAAATAAACCACCTGAGAACTGTCTCTTAAAGCATGTTTTGTAGCCTGAAAA
>XM_039817376.1
ATGGGTTCACCAGGAAACAGTGCGACCTTATCTCGAGCCACACCAAGACGAGGAGCTGTCAAACGTATTTATTAACGTTAATATTATTTCGTGTTTCTTGTTGACTCAACCGCTGTCTGGCCCAACGTGTAAGCTGGCTGAACGTTACCTACATGGCTGCTCACATCAACATTAAACATATGAGCATGTGACCAAGGACTAGGGTCTACAGCACATGATCTGGACAAGTGGAGGAGGCCAAAATCAATCAGGGTACATTATTTCAAAGTGGTCAGTCGGGAGTGAATAGCCATGACAACAAAGACATCCCTGCTTAAAGTCATTCTGCTGGGCGATGGTGGTGTCGGAAAAAGCTCCATCATGAATCGTTATGTTACCAACAAGTTTGATGCACACCTTTTCCACACCATTGGTGTAGAGTTCCTCAACAAGGAACTGGAGGTAGATGGCCACCAGGTTACCCTACAGATCTGGGACACTGCTGGCCAGGAGCGCTTTCGCAGCTTGAGGACTCCTTTCTATCGTGGCTCTGACTGCTGCCTGCTCACATTCAGTGTAGATGACAGCCAGAGTTTTCTCAACTTAGGCAACTGGAAGAAGGAGTTCATCTACTATGCAGATGTCAAGGAGCCAGAGAAGTTCCCATTTGTAGTCTTGGGCAACAAACTGGACGTTACAGAAAGGCAGGTGTCTTCTGAGGAGGCTCGGCAATGGTGCCAGGAGAACGGTGACTACCCCTATTATGAGACCAGTGCCAAGGATGCCACCAATGTAGCGGTGGCCTTCGAGGAGGCAGTGCGTAGAGTGTTGGCATTGGATGAAAGAACGGACCACCTCATCCCCACAGACACAGTTAAGCTTCACAGAAAGCCTCGCTCTGCTACCACTTGCTGTTCATAACATTCAGGGGTTATCACTAACAATACATTGCTGTTATGCCTGTTATGTGATGAGGCTGTATGTTTACAATGCTGTAATAACATCttatttaaacaaattatgCTACTGGCTTTATGATTTGTTATACTGTTGAAGGTTTGATAATGCTAATAGTCTGACTTCTATTTGAAGGGAAAGAGGAAACACTAAATTCATCCCAGtgtaattacaaaaaacatgaaatcaCTGAATCATTTACTCAGCTCTGCCACAGTTCAAAAGTCAGGCTTTGGATGGGTAGCAGAAAAATAAACTATATTTTGTGTTGGCCCAAAACTGGGAACCAAAAATCTGTCATGATAAAACAAAGGCAATATATTTGAAAAGTTTCACTTCCCTCTCAAATGGTTTTCTGTCATGGATGCATATTATAATGCGACTCTTAAAACTACTACCTGTGTACTACCTTGGGAGTGCGATCATGAAAGGGTTACTGAACTTTACTCCTAAATGTAATAACACAGTGATGgcctatatatttatatacagaaAATAACTGCCTAATTAATTTATGCAGCCCAATAACATTATTTGTGAGAATTATGAAGTAGCTAAGGCACTACTATGTGTAACTAACAAATTGAGGCTTGTATTATTGCACCTTTAGGTCTTCTTCGTGCACATTTTGCTTAGTGAATAGATTGTATGCTGAAAGCACTGAGGGACAAGATCCCCAATAGAAGATCAATATTAAAGCAAAGTTAACATGCATGGCATATGGTGTATTTAAGTTTCTGGAAACATTTGTATTTTGTAAACCGTTTTTACCTTACAAATCACTGAATCAATGTTGCCTTGAGGACAGTGCATTGGAATAGCAGTCATGATTGAGTAAACTGTTATCCTCATTGTtgggtttgttttaaataatgATTTTGATCTTTAAAGCACTCTATTAACATTTTTATACTTGCAGTTTAAAGTCTTTCCCCACAGCTTAATATTTACAATGGTGAACCATTTATTTACCTTGTTTCTTATTCACATTTCATTCATATTCAAAGTTGTATTACTGGTATGGCAAATGATAAATAAACCACCTGAGAACTGTCTCTTAAAGCA
>XM_039817377.1
CAGGAAACAGTGCGACCTTATCTCGAGCCACACCAAGACGAGGAGCTGTCAAACGTATTTATTAACGTTAATATTATTTCGTGTTTCTTGTTGACTCAACCGCTGTCTGGCCCAACGTGTAAGGTACATTATTTCAAAGTGGTCAGTCGGGAGTGAATAGCCATGACAACAAAGACATCCCTGCTTAAAGTCATTCTGCTGGGCGATGGTGGTGTCGGAAAAAGCTCCATCATGAATCGTTATGTTACCAACAAGTTTGATGCACACCTTTTCCACACCATTGGTGTAGAGTTCCTCAACAAGGAACTGGAGGTAGATGGCCACCAGGTTACCCTACAGATCTGGGACACTGCTGGCCAGGAGCGCTTTCGCAGCTTGAGGACTCCTTTCTATCGTGGCTCTGACTGCTGCCTGCTCACATTCAGTGTAGATGACAGCCAGAGTTTTCTCAACTTAGGCAACTGGAAGAAGGAGTTCATCTACTATGCAGATGTCAAGGAGCCAGAGAAGTTCCCATTTGTAGTCTTGGGCAACAAACTGGACGTTACAGAAAGGCAGGTGTCTTCTGAGGAGGCTCGGCAATGGTGCCAGGAGAACGGTGACTACCCCTATTATGAGACCAGTGCCAAGGATGCCACCAATGTAGCGGTGGCCTTCGAGGAGGCAGTGCGTAGAGTGTTGGCATTGGATGAAAGAACGGACCACCTCATCCCCACAGACACAGTTAAGCTTCACAGAAAGCCTCGCTCTGCTACCACTTGCTGTTCATAACATTCAGGGGTTATCACTAACAATACATTGCTGTTATGCCTGTTATGTGATGAGGCTGTATGTTTACAATGCTGTAATAACATCttatttaaacaaattatgCTACTGGCTTTATGATTTGTTATACTGTTGAAGGTTTGATAATGCTAATAGTCTGACTTCTATTTGAAGGGAAAGAGGAAACACTAAATTCATCCCAGtgtaattacaaaaaacatgaaatcaCTGAATCATTTACTCAGCTCTGCCACAGTTCAAAAGTCAGGCTTTGGATGGGTAGCAGAAAAATAAACTATATTTTGTGTTGGCCCAAAACTGGGAACCAAAAATCTGTCATGATAAAACAAAGGCAATATATTTGAAAAGTTTCACTTCCCTCTCAAATGGTTTTCTGTCATGGATGCATATTATAATGCGACTCTTAAAACTACTACCTGTGTACTACCTTGGGAGTGCGATCATGAAAGGGTTACTGAACTTTACTCCTAAATGTAATAACACAGTGATGgcctatatatttatatacagaaAATAACTGCCTAATTAATTTATGCAGCCCAATAACATTATTTGTGAGAATTATGAAGTAGCTAAGGCACTACTATGTGTAACTAACAAATTGAGGCTTGTATTATTGCACCTTTAGGTCTTCTTCGTGCACATTTTGCTTAGTGAATAGATTGTATGCTGAAAGCACTGAGGGACAAGATCCCCAATAGAAGATCAATATTAAAGCAAAGTTAACATGCATGGCATATGGTGTATTTAAGTTTCTGGAAACATTTGTATTTTGTAAACCGTTTTTACCTTACAAATCACTGAATCAATGTTGCCTTGAGGACAGTGCATTGGAATAGCAGTCATGATTGAGTAAACTGTTATCCTCATTGTtgggtttgttttaaataatgATTTTGATCTTTAAAGCACTCTATTAACATTTTTATACTTGCAGTTTAAAGTCTTTCCCCACAGCTTAATATTTACAATGGTGAACCATTTATTTACCTTGTTTCTTATTCACATTTCATTCATATTCAAAGTTGTATTACTGGTATGGCAAATGATAAATAAACCACCTGAGAACTGTCTCTTAAAGCA

Function

symbol description
rab9a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be located in phagocytic vesicle membrane. Predicted to be active in late endosome; lysosome; and phagocytic vesicle. Orthologous to human RAB9A (RAB9A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-9A

GO: NA

KEGG:

id description
K07899 RAB9A, RAB9; Ras-related protein Rab-9A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817375.1 False 1963 mRNA 0.40 3 19113405 19116298
XM_039817376.1 True 2001 mRNA 0.40 3 19113771 19116280
XM_039817377.1 False 1872 mRNA 0.40 2 19113781 19116280

Neighbor

gene id symbol gene type direction distance location
egfl6 egfl6 coding upstream 713 19104186 ~ 19112692 (+)
LOC120569791 NA coding upstream 24489 19082133 ~ 19088916 (+)
tlr7 tlr7,LOC102778011 coding upstream 30635 19077189 ~ 19082770 (+)
frmpd4 frmpd4 coding upstream 36622 19042151 ~ 19076783 (+)
LOC120570209 NA coding upstream 151231 18956693 ~ 18962174 (+)
ofd1 ofd1,LOC104947485,LOC104947524 coding downstream 2408 19118706 ~ 19128142 (+)
glra2 glra2,LOC102799111 coding downstream 57649 19173947 ~ 19186008 (+)
mospd2 mospd2 coding downstream 79670 19195968 ~ 19211831 (+)
gpr143 gpr143,LOC102798521 coding downstream 107824 19224122 ~ 19231892 (+)
LOC120570608 anos1,LOC104963477 coding downstream 155950 19272248 ~ 19312067 (+)
G125115 NA non-coding upstream 258375 18852566 ~ 18855030 (+)
G125114 slitrk5,LOC100690770 non-coding upstream 261610 18845407 ~ 18851795 (+)
G125110 NA non-coding upstream 283497 18829619 ~ 18829908 (+)
G125109 NA non-coding upstream 283879 18828933 ~ 18829526 (+)
G125104 NA non-coding upstream 284492 18828686 ~ 18828913 (+)
G125266 NA non-coding downstream 351134 19467432 ~ 19468790 (+)
G125267 NA non-coding downstream 375240 19491538 ~ 19586655 (+)
G125274 NA non-coding downstream 435060 19551358 ~ 19551941 (+)
G125369 NA non-coding downstream 631768 19748066 ~ 19814268 (+)
LOC120570225 NA non-coding downstream 675711 19792009 ~ 19801958 (+)
tmsb4x NA other upstream 22620 19089418 ~ 19090785 (+)
LOC120570507 NA other upstream 285858 18818753 ~ 18827547 (+)
G125079 NA other upstream 408877 18703028 ~ 18704528 (+)
hnrnpa3 hnrnpa3 other upstream 1095992 18010757 ~ 18017413 (+)
hoxd10a hoxd10,LOC102792757 other upstream 1232077 17860160 ~ 17881328 (+)
igsf3 LOC103352919,LOC104967650 other downstream 271717 19388015 ~ 19459274 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 852062 19968360 ~ 19993324 (+)
myo16 myo16,LOC103372229 other downstream 1037557 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 1375880 20492178 ~ 20521274 (+)
mpc2b mpc2 other downstream 1736791 20853089 ~ 20858916 (+)

Expression


Co-expression Network