trappc2 (trappc2)


Basic Information

Item Value
gene id trappc2
gene name trappc2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19116575 ~ 19118587 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817378.1
GCTAAAAACAGCTCCCGCCGAACCGTTTTACAGCAGATAACTGATAATTACATTTCACAGATAGTGCTGCTTGACCATGTCGTCATCTTTGTGCGACTGCTATCGTTTCTCTTCAGGAAGCTAAATTAACAGGGCAGTTTGGCTTTGCTAAGAAGAAGGTGAAACGATGTCTggaagtttttattttgtcatggTTGGTCATCAGGACAACCCTGTGTTTGAGATGGAGTTCTTGCCAGCTGGGAAGGTTGAATCAAAGGATGACCATCGTCACCTGAACCAGTTCATTGCACACGCTGCCCTGGATTTGGTTGATGAAAACATGTGGCTGTCCAACAATATGTACTTGAAAACTGTGGACAAGTTCAACGAGTGGTTTGTTTCTGCCTTTGTTACTGCAGGACATATAAGATTCATCATGCTGCATGATGTGCGACAAGAAGATGGAATCAAGAACTTCTTTAATGATGTATATGATTTATACATTAAGTTTGCAATGAATCCATTTTATGAAATCAATGCACCGATCCGCTCAACAGCTTTCGAGAGGAAAGTACAGTTTCTTGGAAAGAAACATCTCCTGAGTTAATTACTTCACATGCACAAGTACTTTAATGTGTCTTGCCTATTTGTACATATACCCAACACATAATtgatgtctgtctttcttttcctgtttcacaaatgtaaaatgtattcaacaCAGATTTTCTATTAAACATTTTCTTGTCTGATGTAAA

Function

symbol description
trappc2 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment and perinuclear region of cytoplasm. Predicted to be part of TRAPP complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in X-linked spondyloepiphyseal dysplasia tarda. Orthologous to human TRAPPC2 (trafficking protein particle complex subunit 2).

NR:

description
PREDICTED: trafficking protein particle complex subunit 2

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K20301 TRAPPC2, TRS20; trafficking protein particle complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817378.1 True 740 mRNA 0.39 5 19116575 19118587

Neighbor

gene id symbol gene type direction distance location
LOC120570505 LOC104947492,LOC103352939 coding downstream 83386 19010827 ~ 19033189 (-)
mid1 LOC103352941,LOC100711508,LOC102207649,LOC102290384 coding downstream 112548 18977212 ~ 19004027 (-)
cog3 cog3,LOC102779731 coding downstream 141568 18962289 ~ 18975007 (-)
ednrbb LOC103352943,LOC104947527 coding downstream 169500 18943351 ~ 18947075 (-)
pcdh8 LOC104947529,LOC103352945 coding downstream 213478 18898676 ~ 18903097 (-)
gpm6bb gpm6b,LOC100694635 coding upstream 9637 19128224 ~ 19158065 (-)
fancb fancb coding upstream 70596 19189183 ~ 19195845 (-)
LOC120570636 LOC104963478 coding upstream 96166 19214753 ~ 19221945 (-)
LOC120570610 NA coding upstream 220354 19338941 ~ 19349059 (-)
klhl6 klhl6,LOC102796948 coding upstream 231176 19349763 ~ 19355290 (-)
LOC120569517 NA non-coding downstream 2794 19108300 ~ 19113781 (-)
G125178 NA non-coding downstream 25796 19089502 ~ 19090779 (-)
G125173 frmpd4,LOC100710969,LOC102314130 non-coding downstream 39809 19073235 ~ 19076766 (-)
G125116 NA non-coding downstream 269206 18845832 ~ 18847369 (-)
G125113 NA non-coding downstream 271280 18844546 ~ 18845295 (-)
G125227 NA non-coding upstream 83159 19201746 ~ 19205941 (-)
G125293 LOC103392014,LOC104967650 non-coding upstream 313477 19432064 ~ 19432431 (-)
G125294 LOC104967650,LOC103352919 non-coding upstream 317055 19435642 ~ 19436047 (-)
G125295 igsf3,LOC103352919,LOC104967650,LOC105938266 non-coding upstream 320839 19439426 ~ 19439851 (-)
G125299 LOC103352919,LOC102305963 non-coding upstream 335830 19454417 ~ 19459245 (-)
G125090 NA other downstream 411898 18700887 ~ 18704677 (-)
G125089 dct,LOC102781940 other downstream 416773 18695480 ~ 18699802 (-)
prkra prkra other downstream 952826 18156732 ~ 18163749 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other downstream 1001478 18113110 ~ 18115097 (-)
fastkd1 fastkd1,LOC102780871 other downstream 2074203 17035373 ~ 17042372 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 113400 19231987 ~ 19258846 (-)
G125326 dopey2 other upstream 477342 19595929 ~ 19597521 (-)
si:ch211-214p13.3 NA other upstream 633114 19751701 ~ 19768586 (-)
LOC120570223 NA other upstream 671465 19790052 ~ 19796220 (-)
si:ch211-214p13.7 NA other upstream 802681 19921268 ~ 19923735 (-)

Expression


Co-expression Network