pms1 (pms1)


Basic Information

Item Value
gene id pms1
gene name pms1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 5001871 ~ 5031888 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817441.1
TGACTTCTCAGGCTGTGTCCCGCCCTCTATGGTACCGCCGCCAACAAGTTCTACGAACCAGGTACCTTCAATCATGAAGCAGCTGCCTCCCGACACTGTGCGGCTGCTTTCCAGCTCCCAGGTCATCACATCTGTGGTGAACGTTGTGAAAGAATTGATGGAAAATTCCCTGGATGCTGGGGCTTCAAGCATTGATGTTAAACTGGAGAACTACGGTTTGGACCGGATAGAAGTGCGTGATAATGGCCAAGGGATCAAAGCCGAAGACACTCGTGTGATGGCCGTGACACATTTCACCTCAAAGATCTGCAGCCACGAGGACCTGGAGCGACTGGAGACATACGGCTTCAGAGGAGAGGCACTGGGCTCCATCTGTGCCGTGGCCGAGGTGTCTGTCATCACGAAGACAGAGGAGGATGACATCAGCACCCAGTACACCCTTGACTTCACAGGGGAGATTGTTTCTCAGAAGCCATCTCACTTAGGTCAAGGTACAACAGTGAGTGTACTGAAGCTCTTCAAGAATCTTCCAGTGAGACGGCAGTACTATTCCTCTACTAAGAAGTGCAAGGAGGAACTGAAGAAAATGCAGGACCTGCTGCTGGCCTACGCCATTATAAAACCTGACTTGAGGCTCACACTCATTCACAATAAGGTGGTGGTCTGGCAGAAGGCCAAAGTGGCCGATCACAGAAGTGCCCTCCTTGCGACACTGGGGGCCAGCGCCGTTGCCAACCTGCTCCCTTGCCACCATCACCAAGAGCAACCAGAGATTGTTTTAGATGGCTTTTTTCCAAAGCCTGGAGCGGATTACTCTTCTACAAGCTCATCTAACCCTGACAAAACATTTATATTTGTCAACAACCGGCCTGTCCACCAAAAAGATGTAATGAAGTTGTTGCGTCAACACTACACTGCTCAGTATCAGGATGACCCGGCCCGGAACCGTTATCCCACCGCCATGCTTAAAATCACGGTTCCACCATCCTCAGTCGACGTCAATCTGACTCCGGACAAGACCCAGGTTCTTCTTCATAACAAGGAGGCTTTGCTGACTGCAGTAGAGGTATTTCTGGTTTCTCTCTATGGCTATCGGCCCAATGGTGACCCCCCAGCTGAGAAGCAGCTTGGCCATGAGACGTCCCCCTCACCGTCTAGTCCTTTGCAGACTGATGCTTCACAAGCGAACAATGAAGAAAGTGTAGAGAGGCATGGCAGTCCCGCCAACCACCACGGTAACTTCCTCAAAGGTGCATCTAAACACGGTGACGCAGCTCTGTCAACCGCAATAAGCACTGCTGCTTCACTGGACCGCCAGACCTCAAACGGCAGCTCTTCATCCTCTGTAGCGGAGGACTGGTTTGTCAACCAGATCCCAGCTGGGCTTTTGTCTAACTTTGCTCTCTACGATGATGAAACCGCACAGAGCTGCACTCAGACAGAAGAAACGGGCTCAGCAAGGAAGTCCCCTGACAGACGGGAGGACAATGCTGCATCAAGCGCAGACACAAGCAAAGACCAGATATCGGCTGAAGACTGGAGCCGGGGGACGGCTCTGATCGACCCCGTATCACGGGAGCCCCTGCAGCCCGTCAAAATCCATCAACCCACAAGGAACAATCACTCTGACGAGATCAAGAGTCCGAGCAGCTCAGACAAAAAGATGTTCAACGCCATAACAGAGAAGCGGGCTGCTCTGACGGCCTATGACCTGATCAGTAACCGCGCCCTGAGGGCACCGCTGTCTCCCGCCGCCCTATTCGAGAAGGAGGCCAGGCTAGAGGTCCTCAGGGAGAAGCCTACAGCCAGCCTGCAGGAAGTCGGCGTCACCGTTCACGAGAGGTGGAAAAATCTTAGGGAGGAAGATCGTAAGAAGTATGAGGAGAAGGCAAAGAAACACCTGGAACACCACGAGCAAAGGACCAAGATGGCCTCTGCTGAAGGCCCCAGAGAGACGAGTAGGACCCCCCAAAGGGGCCAGAAACGCAAGACCCCACTGTCCAACCAGCAGCTGCTGGACCAGCTCTTCTCTGCACAGCCCCAAAAGAAGATGAGGAGCCCTGCACCCAAGCCCTCGCAGCCCCTCCCCTGCAGCCTAGCTGCCCTTCGGCTGCAGCTTCAGCGCCTTTCATCCCAGAGCAGCGCAGTGCCACGGGGCCTCCGTCTTGTAAACCGGCTGGCCTCTCAGAGCGCCTGGGTCATTTTATGTGGTCAGAGGCTCATGTTGTTAAACCCATTTCGAGTGGAGGAAGCCTTGCTGTTTAAGAGACTCCTAGAGAATAATATACTTCCAGCAGTGAGTCTGCAGAACCCTATACAGCTAACAGATGGTGTTCTAGGGGGAGCTGAATATACTGAGGCTTTGTGCAACATGGAGAAACAAAGCCCTGAGCTAAACGGAGGGGCCCTCTTCTCTGATCCCAGGCTTGTGGCTAATGGGTTTAAAATCCAACTCACTCCAGGCCTCACGTCAGCCGAGAGACATCTGGAAGTGACAGCAATGGCAGACTGCGTGCCTTTCCTCGGTGTGGAGGACCTCAGGGAGATCCTGACTGCAGTTGTTCACGGGAAGGCTGCGACTGTGCAAGAGTGCCGGCCACTTAAAGTCGCAAACTACCTACAAGGTGAAGCAGTGCGACTTGGCCGTCAGTTACCTACAAATTTATCCAGATGTGATGTGGAGGAAACCCTTCTACGGATGGATCAGCAGCTCGGTGAGAGCAACCAGACCTGCATCCATGGACGAGCATTTCTCCAACACCTATGTGACATCCCTTCTACAGACCAGGAAGCCAAAGCTCTGCTGAGGCCTTTAGAGCTATAAGAAGTAGacactttaataaaaaaatcacagcaGTGCAATGTCTATATCAGTCTCATTTTAATGCAGCTGATTCATCTCAATGTAAGATACCTGATTTGTTTCCATTCTGCTTAAATGATGTCCACCTTTGTCACAAACAgaacattaaataaatgtatttttccaca
>XM_039817442.1
CTTCTAACCAATCAAAGTGTAACGAAGGGGGCGGGaatcagttcatttccgccgtATGGCTCGTGTGTCTGTTTATGATTTAGCTAGCAGGCTCGCGGTCAGCAGTCGAAAGGACTCCACCAAGTACCTTCAATCATGAAGCAGCTGCCTCCCGACACTGTGCGGCTGCTTTCCAGCTCCCAGGTCATCACATCTGTGGTGAACGTTGTGAAAGAATTGATGGAAAATTCCCTGGATGCTGGGGCTTCAAGCATTGATGTTAAACTGGAGAACTACGGTTTGGACCGGATAGAAGTGCGTGATAATGGCCAAGGGATCAAAGCCGAAGACACTCGTGTGATGGCCGTGACACATTTCACCTCAAAGATCTGCAGCCACGAGGACCTGGAGCGACTGGAGACATACGGCTTCAGAGGAGAGGCACTGGGCTCCATCTGTGCCGTGGCCGAGGTGTCTGTCATCACGAAGACAGAGGAGGATGACATCAGCACCCAGTACACCCTTGACTTCACAGGGGAGATTGTTTCTCAGAAGCCATCTCACTTAGGTCAAGGTACAACAGTGAGTGTACTGAAGCTCTTCAAGAATCTTCCAGTGAGACGGCAGTACTATTCCTCTACTAAGAAGTGCAAGGAGGAACTGAAGAAAATGCAGGACCTGCTGCTGGCCTACGCCATTATAAAACCTGACTTGAGGCTCACACTCATTCACAATAAGGTGGTGGTCTGGCAGAAGGCCAAAGTGGCCGATCACAGAAGTGCCCTCCTTGCGACACTGGGGGCCAGCGCCGTTGCCAACCTGCTCCCTTGCCACCATCACCAAGAGCAACCAGAGATTGTTTTAGATGGCTTTTTTCCAAAGCCTGGAGCGGATTACTCTTCTACAAGCTCATCTAACCCTGACAAAACATTTATATTTGTCAACAACCGGCCTGTCCACCAAAAAGATGTAATGAAGTTGTTGCGTCAACACTACACTGCTCAGTATCAGGATGACCCGGCCCGGAACCGTTATCCCACCGCCATGCTTAAAATCACGGTTCCACCATCCTCAGTCGACGTCAATCTGACTCCGGACAAGACCCAGGTTCTTCTTCATAACAAGGAGGCTTTGCTGACTGCAGTAGAGGTATTTCTGGTTTCTCTCTATGGCTATCGGCCCAATGGTGACCCCCCAGCTGAGAAGCAGCTTGGCCATGAGACGTCCCCCTCACCGTCTAGTCCTTTGCAGACTGATGCTTCACAAGCGAACAATGAAGAAAGTGTAGAGAGGCATGGCAGTCCCGCCAACCACCACGGTAACTTCCTCAAAGGTGCATCTAAACACGGTGACGCAGCTCTGTCAACCGCAATAAGCACTGCTGCTTCACTGGACCGCCAGACCTCAAACGGCAGCTCTTCATCCTCTGTAGCGGAGGACTGGTTTGTCAACCAGATCCCAGCTGGGCTTTTGTCTAACTTTGCTCTCTACGATGATGAAACCGCACAGAGCTGCACTCAGACAGAAGAAACGGGCTCAGCAAGGAAGTCCCCTGACAGACGGGAGGACAATGCTGCATCAAGCGCAGACACAAGCAAAGACCAGATATCGGCTGAAGACTGGAGCCGGGGGACGGCTCTGATCGACCCCGTATCACGGGAGCCCCTGCAGCCCGTCAAAATCCATCAACCCACAAGGAACAATCACTCTGACGAGATCAAGAGTCCGAGCAGCTCAGACAAAAAGATGTTCAACGCCATAACAGAGAAGCGGGCTGCTCTGACGGCCTATGACCTGATCAGTAACCGCGCCCTGAGGGCACCGCTGTCTCCCGCCGCCCTATTCGAGAAGGAGGCCAGGCTAGAGGTCCTCAGGGAGAAGCCTACAGCCAGCCTGCAGGAAGTCGGCGTCACCGTTCACGAGAGGTGGAAAAATCTTAGGGAGGAAGATCGTAAGAAGTATGAGGAGAAGGCAAAGAAACACCTGGAACACCACGAGCAAAGGACCAAGATGGCCTCTGCTGAAGGCCCCAGAGAGACGAGTAGGACCCCCCAAAGGGGCCAGAAACGCAAGACCCCACTGTCCAACCAGCAGCTGCTGGACCAGCTCTTCTCTGCACAGCCCCAAAAGAAGATGAGGAGCCCTGCACCCAAGCCCTCGCAGCCCCTCCCCTGCAGCCTAGCTGCCCTTCGGCTGCAGCTTCAGCGCCTTTCATCCCAGAGCAGCGCAGTGCCACGGGGCCTCCGTCTTGTAAACCGGCTGGCCTCTCAGAGCGCCTGGGTCATTTTATGTGGTCAGAGGCTCATGTTGTTAAACCCATTTCGAGTGGAGGAAGCCTTGCTGTTTAAGAGACTCCTAGAGAATAATATACTTCCAGCAGTGAGTCTGCAGAACCCTATACAGCTAACAGATGGTGTTCTAGGGGGAGCTGAATATACTGAGGCTTTGTGCAACATGGAGAAACAAAGCCCTGAGCTAAACGGAGGGGCCCTCTTCTCTGATCCCAGGCTTGTGGCTAATGGGTTTAAAATCCAACTCACTCCAGGCCTCACGTCAGCCGAGAGACATCTGGAAGTGACAGCAATGGCAGACTGCGTGCCTTTCCTCGGTGTGGAGGACCTCAGGGAGATCCTGACTGCAGTTGTTCACGGGAAGGCTGCGACTGTGCAAGAGTGCCGGCCACTTAAAGTCGCAAACTACCTACAAGGTGAAGCAGTGCGACTTGGCCGTCAGTTACCTACAAATTTATCCAGATGTGATGTGGAGGAAACCCTTCTACGGATGGATCAGCAGCTCGGTGAGAGCAACCAGACCTGCATCCATGGACGAGCATTTCTCCAACACCTATGTGACATCCCTTCTACAGACCAGGAAGCCAAAGCTCTGCTGAGGCCTTTAGAGCTATAAGAAGTAGacactttaataaaaaaatcacagcaGTGCAATGTCTATATCAGTCTCATTTTAATGCAGCTGATTCATCTCAATGTAAGATACCTGATTTGTTTCCATTCTGCTTAAATGATGTCCACCTTTGTCACAAACAgaacattaaataaatgtatttttccaca

Function

symbol description
pms1 Predicted to enable ATP hydrolysis activity. Predicted to be involved in mismatch repair. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of mismatch repair complex. Human ortholog(s) of this gene implicated in Lynch syndrome; dermatomyositis; pancreatic ductal carcinoma; and polymyositis. Orthologous to human PMS1 (PMS1 homolog 1, mismatch repair system component).

NR:

description
PMS1 protein homolog 1

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0030983 mismatched DNA binding molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10864 PMS1; DNA mismatch repair protein PMS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817441.1 False 2991 mRNA 0.52 13 5001871 5031888
XM_039817442.1 True 3053 mRNA 0.52 13 5002129 5031888

Neighbor

gene id symbol gene type direction distance location
adat3 adat3 coding upstream 3934 4986533 ~ 4997937 (+)
alkbh6 alkbh6 coding upstream 8062 4991670 ~ 4993809 (+)
LOC120569565 NA coding upstream 86366 4898524 ~ 4915505 (+)
stat4 stat4 coding upstream 107808 4872317 ~ 4894063 (+)
slc40a1 slc40a1 coding upstream 160363 4830680 ~ 4841508 (+)
LOC120570421 lss,LOC104947466 coding downstream 82438 5114326 ~ 5115705 (+)
LOC120569312 NA coding downstream 87250 5119138 ~ 5125387 (+)
cnot9 cnot9,LOC103372475,LOC106524050 coding downstream 200482 5232370 ~ 5242872 (+)
LOC120570455 plcd4,LOC103372476 coding downstream 212250 5244138 ~ 5265908 (+)
LOC120570203 LOC103368839,LOC101465291,LOC102206386 coding downstream 257195 5289083 ~ 5296603 (+)
G122148 NA non-coding upstream 28134 4972851 ~ 4973737 (+)
G122142 NA non-coding upstream 55263 4944733 ~ 4946608 (+)
G122120 NA non-coding upstream 154716 4845327 ~ 4847155 (+)
G122115 asnsd1 non-coding upstream 182435 4818615 ~ 4819436 (+)
G122106 NA non-coding upstream 229478 4771055 ~ 4772393 (+)
G122225 NA non-coding downstream 62736 5094624 ~ 5152883 (+)
G122224 NA non-coding downstream 64039 5095927 ~ 5153550 (+)
G122235 NA non-coding downstream 86150 5118038 ~ 5173231 (+)
LOC120569313 NA non-coding downstream 87335 5119223 ~ 5122660 (+)
G122266 usp37 non-coding downstream 183912 5215800 ~ 5216949 (+)
fkbp7 fkbp7,LOC102196462,LOC104949636 other upstream 18892 4974789 ~ 4982979 (+)
G122128 NA other upstream 106369 4894785 ~ 4895502 (+)
zgc:136439 LOC103367146,LOC106581848,LOC101483704 other upstream 183732 4816089 ~ 4818139 (+)
G122036 NA other upstream 281028 4718285 ~ 4720843 (+)
lrrfip1a lrrfip1,LOC102295012,LOC102195615,LOC100691582,LOC103370951,LOC107396304,LOC107099056 other upstream 648948 4294851 ~ 4352923 (+)
LOC120569936 LOC102781033,LOC104920804 other downstream 28113 5060001 ~ 5070248 (+)
G122226 NA other downstream 132345 5164233 ~ 5165898 (+)
ybey ybey other downstream 177214 5209102 ~ 5211902 (+)
G122588 NA other downstream 2114737 7146625 ~ 7149039 (+)
hdac4 LOC103356262 other downstream 3138812 8170700 ~ 8316693 (+)

Expression


Co-expression Network