adat3 (adat3)


Basic Information

Item Value
gene id adat3
gene name adat3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4986533 ~ 4997937 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817444.1
AGTAGATGCTTTTTGTAGGGGACATTTTAGTCAGCTGCACAAGCATGTGCATGAGTCGAGCGGATGACAGGGCTTTCTGACCAAAACGGTATTTTCATCAAAGTTTTGATGTCGAAAGAGGAGGAAACCCAAACAATGGAGCCACAGACGAAGCGCTGGAAAGGGTCCGTGTGCGACTCAGACTCCTGGGTAGCTTATCCTGTCCTGTCAGATGAGCAGTCACAAGACGTCGAGCTGATAAAGGCGTTTGCTGCACCCATTGTCAACAAGAAAGAGACCTCTCGGCTTCTCCGGGAGCTGAGCAGCCTATACCCATTGAGCGGCCTTCAGCACATCAAGAGGGTGCGGGCGGTCCGGGAGAAGGGCAGCCCTCATCCTCTGGAGGTCCTCGTGTGCCTTGTCAGCGACGCACCAGACACCAAGGTGATAAACATCGACTCTCTGCTCCCCTCGGATGGAGTCAGACACGACGGATTAGGTGAGCCTTTTGTGGTGAAGGTCCCTGCACGCCCCCCCTTGACCCGACCCCAGTTTGAGCTGGCGAGCAAACACTGGCCCACCTCCTTTCACGAGGACAAACAGGTGACCGTGGCCCTGAGAGGAGAGCTCTTCAGTCCGCCTCAGAAAGCCAGGATGCACATGTACATGACGTCTGCGTTAACAGCTGCCCAAGCAGGAAAGGAGTTGGGAATGGAGgcggtgggggctgtggtggtcGACCCGGCAACGGAGAGAATCGTCGCGGTAGGCCACGACTGCAGAGGTGACCATCCTCTTCATCACGCGGCCATGGTCTGCATTGACCTGGTGGCTCAGAGCCAGGGCGGCGGACGTTACTCTTTTGACAGATACCCTGCTTGCGGGTTTACCTCGCCAACCTCAGACCCCTTCCAGAGCGCTCCTGGCGCAGAGGCGAGCCCTCAGCCATACATATGCACCGGGTATGATCTTTACGTGACCCGAGAACCTTGTGTCATGTGCGCCATGGCGCTGGTACACTCCCGGATAGGTCGGGTCTTCTACGGGACCGCCTCTGCTGACGGGGCTATAGGGACCAGATATAAAATCCACTCGCAGAAAGATTTGAACCATCACTTTGAGGTTTACAAAGGCGTGTTGGGCAAGCAGTGTGAGGATCTTAACGGTCTGGGCCACCACATCAAAAGAGGAGTGTACAGCAAAGTAGATAATGTATCAACTTCAAAATATCAGACATGAATGGGCCTGgaccttttttatatatatatatatatatatatatatatatatatatatatataatattacataagcatttcttttaaataaacgTTTTAATCATTTGGCCATTGTTGTATTGAGAGCACGTGTGTAGATGAACACTAATAAGGCTCCTTTAGGCTCGTTGGAAGGATTAAAGAGCAAGTTGGTGACCCTGAAGCCTGACTTTGGGTAAGATATTGGcacaataaaaatgttaatttagCGGGGAATTAAGTCATTTTCTTTTGTAAGATTCTCGGTGCACAGGTCCAGATCagggagcatttttttttttttttataaattcagATGCAAAAGAACGACTCAAACCGAATGTTAAATTCAGTATTTAGCTGGTGTTTTTGTGCTTATCTTTGAGGTATTCCCATTTCCAGCGCTCACAACCTACAGTACTCACTACAATAACATAGCATTGTTTTGTCACAATTCAGCTTGTGGCTGTAGAACAAcaaatgttaatttgtgaaGATTTTGTAAAGTTTGCGGTTTCAAGATTGGAGaggcttttttccccccccatgTGGACTCTTTCACAGTATGAGCAACTTAAAGAGCATGTCAAATTAGTTTTCAAACGACGTTGTATACATAGGATTAATTTCTCGGATGTTGTGCATTTTGATGATTGTTTCCAAGCTTCTTTGTTATTCCTGTGCAATCTGTTGTAATACTCTATCATGCATCTATTACACTGTGGATGTGTTATAACACACTTCCCTGATAAGCCTAGGATTGTCAGTGTTGCTTCTCAGGTCAAATAcggttttctaaaaaaaatagcTTTTGTATTCACCTTTTTAGAGTAAACCTTGTGTAAAATCCTCTGATAATCTGAGAGAATCCTGAATTAACTGACTTTTCCTTTGTGGAAAGTACCCAAAAGTTTCATTACATTCCTGATATTCTATAATTACTGGGAAACATGCAGTGCACAACCATTAGAGATGAAACACTTTGAGGgcacaaacattttaataagaTTAAGGACAAGAACTCTCCAGAGCTATGGGCAAACAAAGCAGGACTAGCTGCCTTGATGATAGCCAAAAAGTCATAATCTAAAGAGAGCGCCTACATGAATGTAAGCTGATCACAGAGCTACTGTAGACCTTCCTCAGTAAACACTTAACCAGACAACAATAACTTGTCTCATTTCTACACGCAGGACTTTTTCTTTAGCATACGGGACATaacattcacaaaaaaactgtacaatgtaaaaaaaaaaa
>XM_039817445.1
GATCTTCATCCGGACTGAGGGCAACCTGATCGCTGCTGCCTTCACCTCCGCCGTCATGTCAACACCCAGCTGGGCCCTGGAATACACCATTAATGAGGAAACCCAAACAATGGAGCCACAGACGAAGCGCTGGAAAGGGTCCGTGTGCGACTCAGACTCCTGGGTAGCTTATCCTGTCCTGTCAGATGAGCAGTCACAAGACGTCGAGCTGATAAAGGCGTTTGCTGCACCCATTGTCAACAAGAAAGAGACCTCTCGGCTTCTCCGGGAGCTGAGCAGCCTATACCCATTGAGCGGCCTTCAGCACATCAAGAGGGTGCGGGCGGTCCGGGAGAAGGGCAGCCCTCATCCTCTGGAGGTCCTCGTGTGCCTTGTCAGCGACGCACCAGACACCAAGGTGATAAACATCGACTCTCTGCTCCCCTCGGATGGAGTCAGACACGACGGATTAGGTGAGCCTTTTGTGGTGAAGGTCCCTGCACGCCCCCCCTTGACCCGACCCCAGTTTGAGCTGGCGAGCAAACACTGGCCCACCTCCTTTCACGAGGACAAACAGGTGACCGTGGCCCTGAGAGGAGAGCTCTTCAGTCCGCCTCAGAAAGCCAGGATGCACATGTACATGACGTCTGCGTTAACAGCTGCCCAAGCAGGAAAGGAGTTGGGAATGGAGgcggtgggggctgtggtggtcGACCCGGCAACGGAGAGAATCGTCGCGGTAGGCCACGACTGCAGAGGTGACCATCCTCTTCATCACGCGGCCATGGTCTGCATTGACCTGGTGGCTCAGAGCCAGGGCGGCGGACGTTACTCTTTTGACAGATACCCTGCTTGCGGGTTTACCTCGCCAACCTCAGACCCCTTCCAGAGCGCTCCTGGCGCAGAGGCGAGCCCTCAGCCATACATATGCACCGGGTATGATCTTTACGTGACCCGAGAACCTTGTGTCATGTGCGCCATGGCGCTGGTACACTCCCGGATAGGTCGGGTCTTCTACGGGACCGCCTCTGCTGACGGGGCTATAGGGACCAGATATAAAATCCACTCGCAGAAAGATTTGAACCATCACTTTGAGGTTTACAAAGGCGTGTTGGGCAAGCAGTGTGAGGATCTTAACGGTCTGGGCCACCACATCAAAAGAGGAGTGTACAGCAAAGTAGATAATGTATCAACTTCAAAATATCAGACATGAATGGGCCTGgaccttttttatatatatatatatatatatatatatatatatatatatatataatattacataagcatttcttttaaataaacgTTTTAATCATTTGGCCATTGTTGTATTGAGAGCACGTGTGTAGATGAACACTAATAAGGCTCCTTTAGGCTCGTTGGAAGGATTAAAGAGCAAGTTGGTGACCCTGAAGCCTGACTTTGGGTAAGATATTGGcacaataaaaatgttaatttagCGGGGAATTAAGTCATTTTCTTTTGTAAGATTCTCGGTGCACAGGTCCAGATCagggagcatttttttttttttttataaattcagATGCAAAAGAACGACTCAAACCGAATGTTAAATTCAGTATTTAGCTGGTGTTTTTGTGCTTATCTTTGAGGTATTCCCATTTCCAGCGCTCACAACCTACAGTACTCACTACAATAACATAGCATTGTTTTGTCACAATTCAGCTTGTGGCTGTAGAACAAcaaatgttaatttgtgaaGATTTTGTAAAGTTTGCGGTTTCAAGATTGGAGaggcttttttccccccccatgTGGACTCTTTCACAGTATGAGCAACTTAAAGAGCATGTCAAATTAGTTTTCAAACGACGTTGTATACATAGGATTAATTTCTCGGATGTTGTGCATTTTGATGATTGTTTCCAAGCTTCTTTGTTATTCCTGTGCAATCTGTTGTAATACTCTATCATGCATCTATTACACTGTGGATGTGTTATAACACACTTCCCTGATAAGCCTAGGATTGTCAGTGTTGCTTCTCAGGTCAAATAcggttttctaaaaaaaatagcTTTTGTATTCACCTTTTTAGAGTAAACCTTGTGTAAAATCCTCTGATAATCTGAGAGAATCCTGAATTAACTGACTTTTCCTTTGTGGAAAGTACCCAAAAGTTTCATTACATTCCTGATATTCTATAATTACTGGGAAACATGCAGTGCACAACCATTAGAGATGAAACACTTTGAGGgcacaaacattttaataagaTTAAGGACAAGAACTCTCCAGAGCTATGGGCAAACAAAGCAGGACTAGCTGCCTTGATGATAGCCAAAAAGTCATAATCTAAAGAGAGCGCCTACATGAATGTAAGCTGATCACAGAGCTACTGTAGACCTTCCTCAGTAAACACTTAACCAGACAACAATAACTTGTCTCATTTCTACACGCAGGACTTTTTCTTTAGCATACGGGACATaacattcacaaaaaaactgtacaatgtaaaaaaaaaaa
>XM_039817446.1
GTCGCGGTGCTATGTGTGTTACAAACATGGCGCTTTTTCAGTATTTGAAACGACCCTTTTCCGTGTAACGTTAAtgtgGAGGAAACCCAAACAATGGAGCCACAGACGAAGCGCTGGAAAGGGTCCGTGTGCGACTCAGACTCCTGGGTAGCTTATCCTGTCCTGTCAGATGAGCAGTCACAAGACGTCGAGCTGATAAAGGCGTTTGCTGCACCCATTGTCAACAAGAAAGAGACCTCTCGGCTTCTCCGGGAGCTGAGCAGCCTATACCCATTGAGCGGCCTTCAGCACATCAAGAGGGTGCGGGCGGTCCGGGAGAAGGGCAGCCCTCATCCTCTGGAGGTCCTCGTGTGCCTTGTCAGCGACGCACCAGACACCAAGGTGATAAACATCGACTCTCTGCTCCCCTCGGATGGAGTCAGACACGACGGATTAGGTGAGCCTTTTGTGGTGAAGGTCCCTGCACGCCCCCCCTTGACCCGACCCCAGTTTGAGCTGGCGAGCAAACACTGGCCCACCTCCTTTCACGAGGACAAACAGGTGACCGTGGCCCTGAGAGGAGAGCTCTTCAGTCCGCCTCAGAAAGCCAGGATGCACATGTACATGACGTCTGCGTTAACAGCTGCCCAAGCAGGAAAGGAGTTGGGAATGGAGgcggtgggggctgtggtggtcGACCCGGCAACGGAGAGAATCGTCGCGGTAGGCCACGACTGCAGAGGTGACCATCCTCTTCATCACGCGGCCATGGTCTGCATTGACCTGGTGGCTCAGAGCCAGGGCGGCGGACGTTACTCTTTTGACAGATACCCTGCTTGCGGGTTTACCTCGCCAACCTCAGACCCCTTCCAGAGCGCTCCTGGCGCAGAGGCGAGCCCTCAGCCATACATATGCACCGGGTATGATCTTTACGTGACCCGAGAACCTTGTGTCATGTGCGCCATGGCGCTGGTACACTCCCGGATAGGTCGGGTCTTCTACGGGACCGCCTCTGCTGACGGGGCTATAGGGACCAGATATAAAATCCACTCGCAGAAAGATTTGAACCATCACTTTGAGGTTTACAAAGGCGTGTTGGGCAAGCAGTGTGAGGATCTTAACGGTCTGGGCCACCACATCAAAAGAGGAGTGTACAGCAAAGTAGATAATGTATCAACTTCAAAATATCAGACATGAATGGGCCTGgaccttttttatatatatatatatatatatatatatatatatatatatatataatattacataagcatttcttttaaataaacgTTTTAATCATTTGGCCATTGTTGTATTGAGAGCACGTGTGTAGATGAACACTAATAAGGCTCCTTTAGGCTCGTTGGAAGGATTAAAGAGCAAGTTGGTGACCCTGAAGCCTGACTTTGGGTAAGATATTGGcacaataaaaatgttaatttagCGGGGAATTAAGTCATTTTCTTTTGTAAGATTCTCGGTGCACAGGTCCAGATCagggagcatttttttttttttttataaattcagATGCAAAAGAACGACTCAAACCGAATGTTAAATTCAGTATTTAGCTGGTGTTTTTGTGCTTATCTTTGAGGTATTCCCATTTCCAGCGCTCACAACCTACAGTACTCACTACAATAACATAGCATTGTTTTGTCACAATTCAGCTTGTGGCTGTAGAACAAcaaatgttaatttgtgaaGATTTTGTAAAGTTTGCGGTTTCAAGATTGGAGaggcttttttccccccccatgTGGACTCTTTCACAGTATGAGCAACTTAAAGAGCATGTCAAATTAGTTTTCAAACGACGTTGTATACATAGGATTAATTTCTCGGATGTTGTGCATTTTGATGATTGTTTCCAAGCTTCTTTGTTATTCCTGTGCAATCTGTTGTAATACTCTATCATGCATCTATTACACTGTGGATGTGTTATAACACACTTCCCTGATAAGCCTAGGATTGTCAGTGTTGCTTCTCAGGTCAAATAcggttttctaaaaaaaatagcTTTTGTATTCACCTTTTTAGAGTAAACCTTGTGTAAAATCCTCTGATAATCTGAGAGAATCCTGAATTAACTGACTTTTCCTTTGTGGAAAGTACCCAAAAGTTTCATTACATTCCTGATATTCTATAATTACTGGGAAACATGCAGTGCACAACCATTAGAGATGAAACACTTTGAGGgcacaaacattttaataagaTTAAGGACAAGAACTCTCCAGAGCTATGGGCAAACAAAGCAGGACTAGCTGCCTTGATGATAGCCAAAAAGTCATAATCTAAAGAGAGCGCCTACATGAATGTAAGCTGATCACAGAGCTACTGTAGACCTTCCTCAGTAAACACTTAACCAGACAACAATAACTTGTCTCATTTCTACACGCAGGACTTTTTCTTTAGCATACGGGACATaacattcacaaaaaaactgtacaatgtaaaaaaaaaaa

Function

symbol description
adat3 Predicted to enable catalytic activity and metal ion binding activity. Predicted to contribute to tRNA-specific adenosine-34 deaminase activity. Predicted to act upstream of or within tRNA processing. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ADAT3 (adenosine deaminase tRNA specific 3).

NR:

description
probable inactive tRNA-specific adenosine deaminase-like protein 3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15442 TAD3, ADAT3; tRNA-specific adenosine deaminase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817444.1 True 2492 mRNA 0.45 2 4991651 4997937
XM_039817445.1 False 2466 mRNA 0.45 2 4986533 4997937
XM_039817446.1 False 2450 mRNA 0.45 2 4991835 4997937

Neighbor

gene id symbol gene type direction distance location
LOC120569565 NA coding upstream 71028 4898524 ~ 4915505 (+)
stat4 stat4 coding upstream 92470 4872317 ~ 4894063 (+)
slc40a1 slc40a1 coding upstream 145025 4830680 ~ 4841508 (+)
sympk sympk coding upstream 171376 4798829 ~ 4815157 (+)
LOC120569284 lypd1,LOC103370990,LOC104920802 coding upstream 269920 4689814 ~ 4716613 (+)
pms1 pms1 coding downstream 3934 5001871 ~ 5031888 (+)
LOC120570421 lss,LOC104947466 coding downstream 116389 5114326 ~ 5115705 (+)
LOC120569312 NA coding downstream 121201 5119138 ~ 5125387 (+)
cnot9 cnot9,LOC103372475,LOC106524050 coding downstream 234433 5232370 ~ 5242872 (+)
LOC120570455 plcd4,LOC103372476 coding downstream 246201 5244138 ~ 5265908 (+)
G122148 NA non-coding upstream 12796 4972851 ~ 4973737 (+)
G122142 NA non-coding upstream 39925 4944733 ~ 4946608 (+)
G122120 NA non-coding upstream 139378 4845327 ~ 4847155 (+)
G122115 asnsd1 non-coding upstream 167097 4818615 ~ 4819436 (+)
G122106 NA non-coding upstream 214140 4771055 ~ 4772393 (+)
G122225 NA non-coding downstream 96687 5094624 ~ 5152883 (+)
G122224 NA non-coding downstream 97990 5095927 ~ 5153550 (+)
G122235 NA non-coding downstream 120101 5118038 ~ 5173231 (+)
LOC120569313 NA non-coding downstream 121286 5119223 ~ 5122660 (+)
G122266 usp37 non-coding downstream 217863 5215800 ~ 5216949 (+)
fkbp7 fkbp7,LOC102196462,LOC104949636 other upstream 3554 4974789 ~ 4982979 (+)
G122128 NA other upstream 91031 4894785 ~ 4895502 (+)
zgc:136439 LOC103367146,LOC106581848,LOC101483704 other upstream 168394 4816089 ~ 4818139 (+)
G122036 NA other upstream 265690 4718285 ~ 4720843 (+)
lrrfip1a lrrfip1,LOC102295012,LOC102195615,LOC100691582,LOC103370951,LOC107396304,LOC107099056 other upstream 633610 4294851 ~ 4352923 (+)
LOC120569936 LOC102781033,LOC104920804 other downstream 62064 5060001 ~ 5070248 (+)
G122226 NA other downstream 166296 5164233 ~ 5165898 (+)
ybey ybey other downstream 211165 5209102 ~ 5211902 (+)
G122588 NA other downstream 2148688 7146625 ~ 7149039 (+)
hdac4 LOC103356262 other downstream 3172763 8170700 ~ 8316693 (+)

Expression


Co-expression Network