ormdl1 (ormdl1)


Basic Information

Item Value
gene id ormdl1
gene name ormdl1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4997662 ~ 5001822 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817450.1
CGCTCAGGTCAGTCTACGACGTGTGTTATGCGGCTGCGCTCGTGAATAGCAAAGACACATCAACAAGGAGATAAACCATTTCTCTCCATAGCAGTTTGTTTCTATAAATACCTCCACTGCTCGCTACTACCTACCAGAATGAATGTGGGTGTGGCACACAGTGAGGTGAACCCAAATACTCGGGTCATGAACAGTCGAGGGATCTGGCTGACCTATGCACTGGGTGTCGGAATACTTCACATTGTGCTCTTGAGCATTCCCTTCTTCAGTGTGCCGGTGGTGTGGACTCTCACTAATGTCATACACAACTTTGGAATGTATGTCTTTATGCATGCAGTGAAAGGCACACCTTTTGAGACCCCCGACCAAGGAAAAGCCAGACTTCTTACACATTGGGAACAGCTCGACTACGGCGTGCAGTTCACTTCATCTAGAAAGTTCTTCACCATCTCCCCCATCATTCTATACTTCCTGGCAAGTTTCTACACAAAGTATGACACCACACACTTTGTCATAAACACTGCCTCACTCTTGAGCGTCCTGATCCCCAAGCTGCCACAACTACACAGAGTGCGAATTTTCGGCATCAACAAGTATTAAGTAGTTGTAAATGCTATGCCTCATAGCAACAGAAGTTAACTCCTGTGTAGTCCATACCGCCGATGTGTGTACTAAGTCGTACAGTTTGTGTAAACGTCACTGTCGtcgtttagaaaaaaaataggtttacgatgaaatgtaaaaaaaaaaaaaaaaaaaagcaggagtAGGTTTGTAGATGACAGGATGCCATATGCATTACTAACTTATGTGAATATTTAATGATGTATTTTGGCCTGCATAGACCTGGGCTGGCCCAGGCATCAGTGAGGCTTTTGGTTGAGTTTGTTTCTTCTTTGCCCTCAGTTCACatggcaacacaaattgtgAGTACGAGTTGGTTTCTAGCCACAAATGTccccaaatgtatttttcaaAGATGTTTACTTCCTAAGGGTTGGGGCCTGTGGCTCTTTTGTTTATTGGTACACTCTCATTTTGTAATGGGCGTCAAACGTATTCATGCTGAGTGGAATCCTAATACTCTTTATTTGCACGATTTCCTCTGTATGTGAATCATTTCTTCTTTCGTAACTCAATCAAAACAgagcagactttttttttttacattgtacagtttttttgtgaatgttATGTCCCGTATGCTAAAGAAAAAGTCCTGCGTGTAGAAATGAGACAAGTTATTGTTGTCTGGTTAAGTGTTTACTGAGGAAGGTCTACAGTAGCTCTGTGATCAGCTTACATTCATGTAGGCGCTCTCTTTAGATTATGACTTTTTGGCTATCATCAAGGCAGCTAGTCCTGCTTTGTTTGCCCATAGCTCTGGAGAGTTCTTGTCCTTAAtcttattaaaatgtttgtgcCCTCAAA
>XM_039817451.1
TTGCAACAGTTGGCTGTCTGGGTGTTTAATGTTACACTTTTAACCACCAAATGTTTCTAACTGTTTCTTATTAACGAAATGACGCTGCAACAACTTAGTTTAGAATACTAGTGGTGGTTTGGTCCGGGCTATGTACTGGAGACGAAAACACGTCAAAGACCAGAATGAATGTGGGTGTGGCACACAGTGAGGTGAACCCAAATACTCGGGTCATGAACAGTCGAGGGATCTGGCTGACCTATGCACTGGGTGTCGGAATACTTCACATTGTGCTCTTGAGCATTCCCTTCTTCAGTGTGCCGGTGGTGTGGACTCTCACTAATGTCATACACAACTTTGGAATGTATGTCTTTATGCATGCAGTGAAAGGCACACCTTTTGAGACCCCCGACCAAGGAAAAGCCAGACTTCTTACACATTGGGAACAGCTCGACTACGGCGTGCAGTTCACTTCATCTAGAAAGTTCTTCACCATCTCCCCCATCATTCTATACTTCCTGGCAAGTTTCTACACAAAGTATGACACCACACACTTTGTCATAAACACTGCCTCACTCTTGAGCGTCCTGATCCCCAAGCTGCCACAACTACACAGAGTGCGAATTTTCGGCATCAACAAGTATTAAGTAGTTGTAAATGCTATGCCTCATAGCAACAGAAGTTAACTCCTGTGTAGTCCATACCGCCGATGTGTGTACTAAGTCGTACAGTTTGTGTAAACGTCACTGTCGtcgtttagaaaaaaaataggtttacgatgaaatgtaaaaaaaaaaaaaaaaaaaagcaggagtAGGTTTGTAGATGACAGGATGCCATATGCATTACTAACTTATGTGAATATTTAATGATGTATTTTGGCCTGCATAGACCTGGGCTGGCCCAGGCATCAGTGAGGCTTTTGGTTGAGTTTGTTTCTTCTTTGCCCTCAGTTCACatggcaacacaaattgtgAGTACGAGTTGGTTTCTAGCCACAAATGTccccaaatgtatttttcaaAGATGTTTACTTCCTAAGGGTTGGGGCCTGTGGCTCTTTTGTTTATTGGTACACTCTCATTTTGTAATGGGCGTCAAACGTATTCATGCTGAGTGGAATCCTAATACTCTTTATTTGCACGATTTCCTCTGTATGTGAATCATTTCTTCTTTCGTAACTCAATCAAAACAgagcagactttttttttttacattgtacagtttttttgtgaatgttATGTCCCGTATGCTAAAGAAAAAGTCCTGCGTGTAGAAATGAGACAAGTTATTGTTGTCTGGTTAAGTGTTTACTGAGGAAGGTCTACAGTAGCTCTGTGATCAGCTTACATTCATGTAGGCGCTCTCTTTAGATTATGACTTTTTGGCTATCATCAAGGCAGCTAGTCCTGCTTTGTTTGCCCATAGCTCTGGAGAGTTCTTGTCCTTAAtcttattaaaatgtttgtgcCCTCAAA

Function

symbol description
ormdl1 Predicted to be involved in cellular sphingolipid homeostasis; ceramide metabolic process; and negative regulation of ceramide biosynthetic process. Predicted to act upstream of or within negative regulation of sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of SPOTS complex. Orthologous to human ORMDL1 (ORMDL sphingolipid biosynthesis regulator 1).

NR:

description
hypothetical protein cypCar_00042736, partial

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817450.1 False 1431 mRNA 0.42 4 4997662 5001822
XM_039817451.1 True 1457 mRNA 0.41 4 4997662 5001684

Neighbor

gene id symbol gene type direction distance location
osgepl1 osgepl1 coding downstream 6161 4986399 ~ 4991501 (-)
wdr75 wdr75 coding downstream 125520 4845336 ~ 4872142 (-)
LOC120570304 NA coding downstream 174785 4821819 ~ 4822877 (-)
asnsd1 asnsd1 coding downstream 175730 4818594 ~ 4821932 (-)
LOC120569766 slc35f5 coding downstream 199668 4773593 ~ 4797994 (-)
mstnb NA coding upstream 48676 5050498 ~ 5054623 (-)
hibch hibch coding upstream 67344 5069166 ~ 5092525 (-)
LOC120570040 NA coding upstream 92663 5094485 ~ 5098836 (-)
LOC120570600 NA coding upstream 138174 5139996 ~ 5146102 (-)
LOC120570601 NA coding upstream 150512 5152334 ~ 5160454 (-)
G122189 NA non-coding downstream 86774 4910632 ~ 4910888 (-)
G122178 slc40a1 non-coding downstream 156020 4838404 ~ 4841642 (-)
G122167 NA non-coding downstream 182279 4813163 ~ 4815383 (-)
G122157 NA non-coding downstream 221356 4773988 ~ 4776306 (-)
G122155 NA non-coding downstream 225276 4771173 ~ 4772386 (-)
G122209 NA non-coding upstream 39675 5041497 ~ 5041787 (-)
G122288 NA non-coding upstream 117311 5119133 ~ 5122669 (-)
LOC120570604 NA non-coding upstream 162250 5164072 ~ 5166525 (-)
G122347 NA non-coding upstream 546815 5548637 ~ 5552149 (-)
G122352 NA non-coding upstream 570876 5572698 ~ 5573559 (-)
glsb gls,LOC100711430,LOC102197968,LOC101482051 other downstream 25051 4917659 ~ 4972611 (-)
col6a3 col6a3 other downstream 837523 4107999 ~ 4160139 (-)
steap3 NA other downstream 1535959 3426024 ~ 3461703 (-)
G121877 clg16-21h2orf76,LOC101472530,LOC102207757,LOC108238817,LOC102789177,LOC103368446 other downstream 1557996 3414399 ~ 3439666 (-)
G121832 NA other downstream 1611197 3386067 ~ 3386465 (-)
G122404 NA other upstream 1010218 6012040 ~ 6014195 (-)
LOC120569614 NA other upstream 1639059 6640881 ~ 6681994 (-)
pcbp3 pcbp3,LOC100710924,LOC107660579,LOC103138153 other upstream 1780624 6782446 ~ 6871212 (-)
tmeff2a tmeff2 other upstream 2180109 7181931 ~ 7317632 (-)
traf3ip1 traf3ip1 other upstream 3397763 8399585 ~ 8448430 (-)

Expression


Co-expression Network