neurod1 (neurod1)


Basic Information

Item Value
gene id neurod1
gene name neurod1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24130018 ~ 24134141 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817452.1
tgagTATAAAAACGGCATCCTCCCACACACACCTCAGAAAGCTCAGAGCAGGTCACGTACAGTCACGCACACGACACGCACATAGAGCGCGCGGGATGCGTGCGATCTGACGAACAGCGGCTTGTTACAACAGTCTCAAACAGAGAATCAGCATCATGACCAGATCTGTGCGGGAGGAGCAGGAGTCAGTGGAGtcggaggagcagcaggagcttAACAGCCcctcagagggaggaggagaggaggaggaggaggacagccaacaacagctggaggaggaagaggaggacgatgatgaggacgaagaggaggaggaggatggcgAGAACAAACCCAAGAGGCGAGggccaaagaagaagaagatgacgAAGGCTCGTATTCAGAGGTTTAAGGTCCGTCGGATGAAAGCTAACGCCCGGGAGAGGAACCGTATGCATGGGCTGAACGACGCTCTGGAGAGTCTGCGGAAAATCGTCCCTTGTTACTCCAAAACCCAGAAACTGTCCAAGATCGAGACGCTCCGCCTCGCTAAGAACTACATCTGGGCCCTGAGTGAGGTCCTGCGCTCCGGCAAGGCACCCGACCTCATGAGCTTCGTCCAGGCGCTCTGCAAAGGTCTGTCTCAGCCGACCACTAACTTGGTGGCAGGCTGCCTGCAGTTGAATCCTCGGACTTTCCTGCCGGAGCAGACCCCCGacctgccagttcacctccCCCCCGCCGGTGCTGCCACCTATCCTGGACACTACTCTTCCTACCAGAGCCCCGGGCTGACGGCCGGCCTGCCCAGCCCGCCCTACGGCACCATGGAGCCCTCCCACATCTTCCaccaggtcaaaggtcagcccTACGGCTCGATGGAGCCCTTCTTTGATGGCGTCCTGGTGTCGGATGCCCCGGCGTTTGACCCGCCCCTCAGCCCACCGCTCAGCATCAACGGGAACTTCTCGTCCTTCAAGCATGAGACCGTTGCAGCTGCAGACTACGACAAGAGTTTCTCTTTCAGCGTGCACTATGGGGGCGGTGGAGCTGGGGGACACCCTGCCATATATGGCGGCGGGGGGTCCAACCCGCGGTGCGGCGAGCTGCAGGTGGACGGGCTGATGGGCTTTGACGGACACTCACACCACGAGCGGATGATGAACGCCCAGCTGAACGCCATTTTCCACGACTCCTGAGGacgaggaggacagagagaccGATGAAGACAGAAAGACGAACAGTTAtatggagagacagacagttctGTGTATGTCTATCATTTCATAGCTGTCTTTCTTCCTatccttcctttcctttttctgtCTGCATTAGGCTCTACCACCCCTCCTCATCATGAGGGCGATGATGTCGATGACGATGTCATGCTGATGATGTAACCTTCTTTGTAGCGCTTCATCCTGCAGAAGACGCTCTCTGAATGTCTCGTTAATTGTCCATATTATCAcgtaaaaataatcaataaccaATAATCAATAAGCAATAATCTGGAGGAAACTATGCAATTTTGTTCAAACCTGGGCGATGCTCAGCGGATAATTCCAAATGTTGAAAGAATAAAGATTTCTCTATTTTTGGGTCTGTGCGTAAGGCGGCTTTGAGCCGTTATGGAGCTGGTGTTGAGCCGGCGTTGGGCCGAAGTGTTCATGTTGTTCATGTGGTTTTTGCTTTTTATAACGTTCCTGTAGCGTTTTGTTAACCATTCATGTGACTCTTGTTCATATTTTATAAGATAGATGTTTATAAAGGCCTTTTAATAAAAGGAATACAACGTGA

Function

symbol description
neurod1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including endocrine pancreas development; negative regulation of Notch signaling pathway; and neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; nervous system; neural plate; neurogenic placode; and pancreatic system. Human ortholog(s) of this gene implicated in glucose intolerance; hyperglycemia; maturity-onset diabetes of the young type 6; type 1 diabetes mellitus; and type 2 diabetes mellitus. Orthologous to human NEUROD1 (neuronal differentiation 1).

NR:

description
neurogenic differentiation factor 1

GO: NA

KEGG:

id description
K08033 NEUROD1; neurogenic differentiation factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817452.1 True 1776 mRNA 0.53 4 24130018 24134141

Neighbor

gene id symbol gene type direction distance location
cerkl cerkl coding downstream 4291 24089309 ~ 24125727 (-)
rpl8 rpl8,LOC106586796,LOC107595836 coding downstream 96249 24030441 ~ 24033769 (-)
med14 med14 coding downstream 156328 23958247 ~ 23973690 (-)
si:ch211-269e2.1 LOC103357720 coding downstream 178327 23928533 ~ 23951691 (-)
shox shox,mog-12 coding downstream 304205 23817012 ~ 23825813 (-)
dnajc15 dnajc15 coding upstream 164155 24298296 ~ 24302866 (-)
ccnyl1 ccnyl1,LOC104923590 coding upstream 247446 24381587 ~ 24401907 (-)
creb1b creb1,LOC107389684 coding upstream 268472 24402613 ~ 24418003 (-)
klf7b klf7,LOC104923592,LOC108238840 coding upstream 330984 24465125 ~ 24535505 (-)
gdf3 gdf3 coding upstream 507303 24641444 ~ 24644042 (-)
G126606 NA non-coding downstream 124358 24005059 ~ 24005660 (-)
G126597 LOC101470276,LOC102292608,LOC102197480,LOC100692635,LOC103357839 non-coding downstream 175648 23953403 ~ 23954370 (-)
G126535 NA non-coding downstream 416061 23713486 ~ 23713957 (-)
G126534 NA non-coding downstream 416748 23711987 ~ 23713270 (-)
G126533 NA non-coding downstream 419703 23709174 ~ 23710315 (-)
G126673 NA non-coding upstream 44316 24178457 ~ 24180149 (-)
G126676 NA non-coding upstream 46830 24180971 ~ 24182844 (-)
G126686 NA non-coding upstream 63738 24197879 ~ 24198556 (-)
G126695 NA non-coding upstream 69475 24203616 ~ 24203991 (-)
G126727 NA non-coding upstream 143037 24277178 ~ 24277430 (-)
si:ch211-218d20.15 LOC104960513,LOC101470276,LOC102197480,LOC102292608,LOC107099189,LOC100692635 other downstream 172812 23954846 ~ 23957206 (-)
gpr18 gpr18 other downstream 1006110 23110033 ~ 23123908 (-)
klf5b LOC104962226,LOC103357491 other downstream 1162117 22962199 ~ 22967901 (-)
scel scel other downstream 1464546 22655579 ~ 22665472 (-)
katnal1 katnal1,LOC106527129,LOC104958633 other downstream 1500903 22615496 ~ 22629115 (-)
cnga4 cnga4,LOC103356095 other upstream 537081 24671222 ~ 24679011 (-)
G127032 neb other upstream 1564587 25698728 ~ 25701551 (-)
G127046 neb,LOC100194727 other upstream 1590933 25725074 ~ 25740126 (-)
arhgap20 LOC103357161,LOC102081671,LOC104942835 other upstream 2067021 26201162 ~ 26259576 (-)
gjb8 LOC103391957,LOC104941692,LOC103357168 other upstream 2369418 26503559 ~ 26508638 (-)

Expression


Co-expression Network