prpf40a


Basic Information

Item Value
gene id prpf40a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15567999 ~ 15585951 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817521.1
CGCAGAATGACGCTACAGAATCTTTACCTTTGACCTCTCCGCATGCGGTGGGAGTTGAGCCAATCGTTTGGCTCGTTGTTGAGAGGTGCTCTAGCTAGTTTCTCGGAGGCATACCCTCTCGTCAACATGTCTTCATCGGACGCTAATAATGGCCCGAGCCAAGCGCCCCCTTATCCAGGTGTACCGCCCTCAGGGATACCTCCCCCATTTATGGGACCACCAGGAATACCGCCTCATTTCCCTCCTATCGGAATGCCCCCTATGGGACAGCGACCGCCGAGCATGACTCCAATGCCTCCTGGTATAATTCCCCCTGGTATAATGCCACCAATGGGGGCACCACCAATGGGACAGATGCCAGGCATGATGCCACCTATGATGCCAGGGATGATGATGCCCCCTCGCATGCCAGCTGCGGCTGTACAACCAACGGGACCGCCTGGTGTCGACTCGACAGCTGCTGCACCTGGTACTGCTAGTACCACAAATGGATCTCCACAGGAGGAACAGCCAAAGAAGAAGTCCCTGTGGACAGAACACAAATCACTGGATGGGAAGACCTATTTTTACAATACAGAAACCAAGCAGTCCACATGGGAGAAACCAGAGGATCTCAAATCTCCTGCAGAGcAAATGCTGTCTAAATGCCCTTGGAAGGAGTACAAGTCAGACACAGGGAAGCCTTATTATTACAACTCTCAGACGAAGGAGTCCAGATGGACCAAACCCAAAGAGCTCGAGGATCTGGAAGCTATGATCAAAGCAGAAGAGAATGGAACGGCAGAGGCAATTGCTCCTGGCATCACAGCAGCTCCTGCAGTGCAAGCAGATAATACAGCCACTATGGCAACCATGATTGAGGCGGAAACTGCAACAGCAGTCTCAGAGGAACACCTGTCTCAGGCGGCCATGCATCACACAGCTGAGGTCAAGACTGCCGATGCACCTGTGGCTTCCTCAGAGAGCTCAGCCGCCACAGAGGCCACAGCCAGTATTGAAGTTACAAAAGAAGAACGGCCAGAAATTCAGAAGAAAACTTACAAATGGAACACGAAAGAGGAAGCGAAGCAGGCTTTCAAAGAGCTGCTGAAGGAGAAGGGTGTGTCATCAAACTCCTCTTGGGAACAGGCTATGAAAATGATTATCAATGATCCTCGCTACAGCGCACTTCCCAAACTGAGTGAGAAGAAACAGGCGTTCAATGCCTACAAAGTCCAAACggagaaggaagaaaaagaagaagccaGAATTAAATACAAGGAGTCCAAAGAGACCTTTCAGAGGTTCTTGGAGAACCACGAGAAGATGACATCTACCACCAGATACAAAAAAGCAGAACAGATGTTTAATGAGCTTGAGGTGTGGAGCTGTGTACCAGAGAGAGACCGGCTGGAGATCTATGAAGATGTATTGTTCTACCTTGCTAAGAAAGAGAAGGAGCAAGCCAAACAGCTAAGAAAGAGGAACTGGGAAGCTCTGAAGAACATTTTGGACAACATGGCCAACGTCACATACCGCACCACCTGGTCAGAGGCCCAGCAGTACCTGCTGGACAACCCTACTTTCGCAGAGGATGAGGAGCTGCAGAATATGGACAAAGAGGATGCCCTCATTTGTTTTGAGGAGCATATCCGGGCTctggagaaggaggaagaggaggagaaacagAAGACTCTTCTCAGGGAGAGAAGACGACAACGCAAGAACAGAGAGGCCTTCCAGAAATTCCTGGATGAGCTCCACGATCACGGTCAGCTTCACTCCATGTCTGCCTGGATGGAGATGTACCCGACCCTGAGCTCCGACATCCGCTTTGCCAACATGCTGGGCCAGCCGGGTTCCACTCCCCTAGATCTGTTCAAATTCTATGTTGAAGACTTGAAGGCCCGCTACCATGATGAAAAGAGGATCATTAAAGATATTCTAAAGGACAAAGGCTTTCTGGTGGAAGTCAACACTAGCTTTGATGACTTTGGATCAGTGATCAGCTCAGACAAGAGAGCCACCACCCTGGATGCAGGAAACATAAAGCTGGCATTTAACAGTTTACTGGAGAAGGCAGAAGcccgagagagagagcgagagaaggaggaggccaGGAAGATGAAAAGGAAAGaagcagcctttaaaaacaTGCTGAAGCAGGCCACACCACCCCTGGAGCCAGAGACTACATGGGAGGGGATCAGAGAGAGATTCTTAAAAGAATCTGCCTTTGAAGACGTGACTCTGGAGTCTGAGAGGAAACGGATATTCAAAGACTTCATGCATGTCTTAGAGCACGAGTGCCAACATCACCACTCCAAGACGAAGAAGCACTCAAAGAAGTCTAAGAAGCACCACAGGAAACGATCCCGCTCTCGATCGGGCTCAGAGTCTGAGGACGAGGAATAccacaagaagaaaaagaggtCACAGTCCAAATCTCCTTCCGAACGCTCGTCAAGCGGAGAATCTGAGAGAAGCTATAAAAAATCCAAGAAGCACAAGAAGAAGGGCAAGAAGAGACGCCATAAGTCTGCATCGCCAGACTCCGACACTgagaagaaaggaagagagcGTGATGGAAAGCGTGAAAAGGACTTAGAGAAAGATAAAGAGAACGACAAGTCTCGGGGGAAATCTCGCTCAGACTCCAAACAGAAGTCTCCTAAAAGAAAAGCTGCAAAAGAGGAGGGCGGCTGGGATACATCAGGCAGTGAGCTGAGTGAGGGAGAGCTGGAGAAAAGGAGAAGAACTTTACTGGAACAGCTGGATGCACCTTGATGTTCACTTCTGCTGCCCTTTTCTTGTATTTGTACACTTCTACAAACATGCATTCCCCTCCGGGCTCATCTGACTGTACTGGGCATACCACCCTGGACGGACTGTGTGAGACGACACCATTCTCTGGTAGTTATGGGAATGTGCGACACTGAGCTTACACGCTTATTCGGTGACTAATTTGATATCGGGAAATTGATCAGCTAATCAACCTTTAAATTTCAGGTTGTCTTTTTGTTGCCTTAGTATTTTTTAGTTGACTGTAGTTGTACATGTTTTCCATTGCCAAtaatttttatattcaattaaaAGTCTTTTTAGTCACACTGACCGTCTTTCACCTGAAAAAGTAGCGCAAGAAGAAGACAACATTTCTGGACAACATATCTTTCATTATCTCTGGACACGTTCTGAGATAATGAAACTATTTATGATTTGGTCCAATTGAACTGCAGATGTAGTCTCGAGGAATGATCCAAATAAGTTTTAACTGGAGCATCTGTTAAAATTCATATACTATagtgaaatgtaataaaatactGTGTGAATGGATTACGTCTGTAATTGGATACTTTAGGAGATCAGTAAGGTTTTACTCATGTTATTTGTGTAATTTCTTACATTTGAGACTAGATTCAGTTCAATAAAAGTGTGAAATGTCAA

Function

NR:

description
PREDICTED: pre-mRNA-processing factor 40 homolog A isoform X3

GO: NA

KEGG:

id description
K12821 PRPF40, PRP40; pre-mRNA-processing factor 40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817521.1 True 3426 mRNA 0.47 28 15567999 15585951

Neighbor

gene id symbol gene type direction distance location
glb1l glb1l,LOC100708354,LOC102776574,LOC102302597 coding downstream 135486 15426799 ~ 15432513 (-)
LOC120569293 LOC104943022,LOC104919017,LOC103370185 coding downstream 150089 15414619 ~ 15417910 (-)
LOC120569292 LOC103370192,LOC103461666,LOC104943023,LOC100710321,LOC105937152 coding downstream 154220 15411570 ~ 15413779 (-)
tra2b tra2b coding downstream 158528 15402680 ~ 15409471 (-)
igf2bp2a igf2bp2 coding downstream 168892 15352449 ~ 15399107 (-)
rprma rprm,LOC102780493 coding upstream 28723 15614674 ~ 15615857 (-)
nr4a2a nr4a2,LOC106586168,LOC104920078,LOC103363922 coding upstream 226733 15812684 ~ 15817665 (-)
LOC120570325 NA coding upstream 323995 15909946 ~ 15911626 (-)
LOC120569256 cytip coding upstream 329948 15915899 ~ 15919288 (-)
LOC120570316 acvr1c coding upstream 334652 15920603 ~ 15941311 (-)
G124146 NA non-coding downstream 63287 15502748 ~ 15504712 (-)
G124136 NA non-coding downstream 91851 15475258 ~ 15476148 (-)
trnak-uuu_17 NA non-coding downstream 150727 15417200 ~ 15417272 (-)
G124014 NA non-coding downstream 371781 15178318 ~ 15196218 (-)
G124001 NA non-coding downstream 444054 15116194 ~ 15123945 (-)
LOC120569338 NA non-coding upstream 278581 15864532 ~ 15901689 (-)
G124304 NA non-coding upstream 516205 16102156 ~ 16102355 (-)
G124324 NA non-coding upstream 694633 16280584 ~ 16280878 (-)
G124346 NA non-coding upstream 736534 16322485 ~ 16322657 (-)
G124350 NA non-coding upstream 759337 16345288 ~ 16357884 (-)
G123960 NA other downstream 574210 14984485 ~ 14993789 (-)
G123886 NA other downstream 773502 14784561 ~ 14794497 (-)
ikzf2 ikzf2 other downstream 1366270 14175814 ~ 14201729 (-)
G123481 LOC106675207,LOC106674584,LOC106676400,LOC106674915,LOC106675345,LOC106676354,LOC106674636 other downstream 2948184 12619353 ~ 12619815 (-)
LOC120570668 LOC103354235,LOC105936145,LOC100692075,LOC108240393,LOC104918665 other downstream 3322994 12232420 ~ 12245005 (-)
G124303 dapl1 other upstream 513327 16099278 ~ 16101593 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other upstream 621739 16207690 ~ 16222736 (-)
gcgb gcg other upstream 792537 16378488 ~ 16380765 (-)
LOC120570068 LOC103362129,LOC101485094 other upstream 795299 16381250 ~ 16389894 (-)
fastkd1 fastkd1,LOC102780871 other upstream 1449422 17035373 ~ 17042372 (-)

Expression


Co-expression Network