dars1 (dars,LOC102778528)


Basic Information

Item Value
gene id dars1
gene name dars,LOC102778528
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 11550915 ~ 11581353 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817659.1
CGGTATGCGGTGCTCCGTCAAAACAAGTCCTTCCTTCCTATGTCCGTCCATGCTTTGAACAGCTGATGGTGCTTCTCTCTGTCAGACAGCCGTGAAACGTTTTGTCCTCATTCTCCAAGAATATATAGCTCGCCATGACTAAAGAGGAAGTCCAGGGGGCGacggaggaggagcagcaggctCAGTCAAAGAAAGGCCTGAAGAAACAGCAGAAGGAAGCGGAGAAAGCAGCAAAGAAGGCTGAGAAACAGGCCAAGCTggCTGCCGAACAGCAAAGCACAGAGGAAGATGACTTTGCCAAAGACAGATACGGTGTGTCGGCTATGGTCCAGTCCCAACAGAAACTGGACAGGGTGTTGGTGCGCGTCCAAGACCTTACTCCTGAGAATGCTGACCAGCTGATCTGGCTGCGTGCCCGAGTCCACACCAGCAGAGCCAAAGggAAGCAATGCTTCTTGGTCCTGCGTCAACAGCAGTTCAACGTGCAGGCACTGGTCGCAGTGGGAGATCGTGCCAGCAAGCAGATGGTCAAGTTCGCCGCAAACATCACCAAGGAAAGCATCGTAGACGTGGAGGCGTTGGTGAGGAAAGTGGAGCAGAAGATCGAAAGCTGCTCCCAGCAGGACGTGGAGCTGCACATCGAGAGGATTTTTGTCATCAGCCAGGCAGAGCCTCGTCTCCCCCTGCAGTTGGAGGATGCCGTCAGGCCTGACGGAGAGGGGGAAGagGAAGGCAGAGCCACAGTCAACCAGGACACCAAGCTGGACAACAGGGTGATTGATCTCAGGACGACCACCAGCCAGGCCATATTTCGCCTGCAGTCCGGAGTGTGCCAGCTCTTCAGGGACACCCTCACCAAAAAGGGCTTTGTGGAGATCCAGACCCCTAAAATCATATCAGCTGCCAGCGAAGGTGGAGCGAATGTCTTCACTGTATCTTACTTTAAAACCAGCGCCTACCTGGCCCAGTCTCCCCAGCTCTACAAGCAGATGTGCATCTGTGCTGACTTTGACAAGGTCTTCTGTGTGGGTCCAGTTTTCAGGGCGGAGGACTCCAACACCCACCGTCACTTGACTGAGTTTGTGGGTCTGGATATTGAGATGGCCTTCAGCTACCATTACCACGAAGTGATTGACTCCATCACTGACACCATGGTGCAGATCTTCAAGGGCCTGAGAGACAACTTTCAGACAGAGATCCAGACGGTGAACAAGCAGTACCCCAGTGAGCCTTTCAAATTCCTGGAGCCCACTCTGAGGCTGGAGTACACCGAGGCCTTGGCCATGCTGCGCGAGGCCGGGGTGGAGATGGGTGACGAGGACGACCTCAGCACGCCCAATGAAAAGCTGCTTGGACGTCTTGTCAAGGAAAAGtATGACACTGACTTCTATGTGCTGGATAAGTACCCACTGGCTGTTAGACCCTTCTACACAATGCCGGATCCAAACAACCCTaAATACTCCAACTcctatgacatgttcatgaggGGAGAGGAGATCCTGTCTGGAGCTCAGAGAGTCCACGACGCTCAGATGCTGACTGACCGGGCCATCCATCACCAGATTGATCTGGAGAAGATCAAGGCATACATCGACTCCTTCCGGTATGGAGCCCCCCCACATGGCGGTGGAGGCATTGGCCTGGAGAGAGTCTGCATGCTGTACCTGGGGCTCCACAACGTGCGTCAGACCTCCATGTTCCCACGTGACCCGAAGCGCCTGACGCCTTGAATCCTCCACCACGTAGACAAAGCAGATGCTGGCGATGGGAAACGATACTAATCCACAACACAGAAAGGGGGAGAGTATAGGAGCTAGTGCCACACTAACGTGCCACTACGATTAACAATTAAGATGAGAGAATGAAGCTTTTGCAACAGTAGGGTTTACTTTATTGATTGGTGTATAACATACATAACAGAGAAAAGGGAGTTGGCCAGGAATTTAAGGGCGTTCCTGTAAAGCTGGCCCGCACTTAATCCATCTTTTATTCAAGTCAGTGTTCGTCTTTAAATTCTTTTCTATGGagatgttaaaaaacaaactcttAATACCGATCGGAGTCCCTCCTACTACCAGCACAGACTAAAGACTATTGATTGTGGTCTCCAGCAGTATGACTCTAACTACAGGTGTTTGTATATCATTAGAGGactaaacacaaacaataataaaaacttcTAAAACAATCAA
>XM_039817660.1
gaggaaaattccacaacagGGCGacggaggaggagcagcaggctCAGTCAAAGAAAGGCCTGAAGAAACAGCAGAAGGAAGCGGAGAAAGCAGCAAAGAAGGCTGAGAAACAGGCCAAGCTggCTGCCGAACAGCAAAGCACAGAGGAAGATGACTTTGCCAAAGACAGATACGGTGTGTCGGCTATGGTCCAGTCCCAACAGAAACTGGACAGGGTGTTGGTGCGCGTCCAAGACCTTACTCCTGAGAATGCTGACCAGCTGATCTGGCTGCGTGCCCGAGTCCACACCAGCAGAGCCAAAGggAAGCAATGCTTCTTGGTCCTGCGTCAACAGCAGTTCAACGTGCAGGCACTGGTCGCAGTGGGAGATCGTGCCAGCAAGCAGATGGTCAAGTTCGCCGCAAACATCACCAAGGAAAGCATCGTAGACGTGGAGGCGTTGGTGAGGAAAGTGGAGCAGAAGATCGAAAGCTGCTCCCAGCAGGACGTGGAGCTGCACATCGAGAGGATTTTTGTCATCAGCCAGGCAGAGCCTCGTCTCCCCCTGCAGTTGGAGGATGCCGTCAGGCCTGACGGAGAGGGGGAAGagGAAGGCAGAGCCACAGTCAACCAGGACACCAAGCTGGACAACAGGGTGATTGATCTCAGGACGACCACCAGCCAGGCCATATTTCGCCTGCAGTCCGGAGTGTGCCAGCTCTTCAGGGACACCCTCACCAAAAAGGGCTTTGTGGAGATCCAGACCCCTAAAATCATATCAGCTGCCAGCGAAGGTGGAGCGAATGTCTTCACTGTATCTTACTTTAAAACCAGCGCCTACCTGGCCCAGTCTCCCCAGCTCTACAAGCAGATGTGCATCTGTGCTGACTTTGACAAGGTCTTCTGTGTGGGTCCAGTTTTCAGGGCGGAGGACTCCAACACCCACCGTCACTTGACTGAGTTTGTGGGTCTGGATATTGAGATGGCCTTCAGCTACCATTACCACGAAGTGATTGACTCCATCACTGACACCATGGTGCAGATCTTCAAGGGCCTGAGAGACAACTTTCAGACAGAGATCCAGACGGTGAACAAGCAGTACCCCAGTGAGCCTTTCAAATTCCTGGAGCCCACTCTGAGGCTGGAGTACACCGAGGCCTTGGCCATGCTGCGCGAGGCCGGGGTGGAGATGGGTGACGAGGACGACCTCAGCACGCCCAATGAAAAGCTGCTTGGACGTCTTGTCAAGGAAAAGtATGACACTGACTTCTATGTGCTGGATAAGTACCCACTGGCTGTTAGACCCTTCTACACAATGCCGGATCCAAACAACCCTaAATACTCCAACTcctatgacatgttcatgaggGGAGAGGAGATCCTGTCTGGAGCTCAGAGAGTCCACGACGCTCAGATGCTGACTGACCGGGCCATCCATCACCAGATTGATCTGGAGAAGATCAAGGCATACATCGACTCCTTCCGGTATGGAGCCCCCCCACATGGCGGTGGAGGCATTGGCCTGGAGAGAGTCTGCATGCTGTACCTGGGGCTCCACAACGTGCGTCAGACCTCCATGTTCCCACGTGACCCGAAGCGCCTGACGCCTTGAATCCTCCACCACGTAGACAAAGCAGATGCTGGCGATGGGAAACGATACTAATCCACAACACAGAAAGGGGGAGAGTATAGGAGCTAGTGCCACACTAACGTGCCACTACGATTAACAATTAAGATGAGAGAATGAAGCTTTTGCAACAGTAGGGTTTACTTTATTGATTGGTGTATAACATACATAACAGAGAAAAGGGAGTTGGCCAGGAATTTAAGGGCGTTCCTGTAAAGCTGGCCCGCACTTAATCCATCTTTTATTCAAGTCAGTGTTCGTCTTTAAATTCTTTTCTATGGagatgttaaaaaacaaactcttAATACCGATCGGAGTCCCTCCTACTACCAGCACAGACTAAAGACTATTGATTGTGGTCTCCAGCAGTATGACTCTAACTACAGGTGTTTGTATATCATTAGAGGactaaacacaaacaataataaaaacttcTAAAACAATCAA

Function

symbol description
dars Predicted to enable RNA binding activity and aspartate-tRNA ligase activity. Predicted to be involved in aspartyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in cytoplasm and synapse. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human DARS1 (aspartyl-tRNA synthetase 1).

NR:

description
aspartate--tRNA ligase, cytoplasmic-like

GO:

id name namespace
GO:0006422 aspartyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004815 aspartate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22503 DARS1; aspartyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817659.1 True 2192 mRNA 0.51 18 11550915 11581353
XM_039817660.1 False 2054 mRNA 0.51 18 11552705 11581353

Neighbor

gene id symbol gene type direction distance location
LOC120569661 NA coding upstream 4613 11544608 ~ 11546302 (+)
nxph2a nxph2,LOC101474521 coding upstream 374975 11156590 ~ 11175940 (+)
rabl3 rabl3,LOC102779363 coding upstream 416771 11130057 ~ 11134144 (+)
LOC120569327 LOC103358003,LOC100710305,LOC102781664,LOC101475894 coding upstream 1333265 10211110 ~ 10217650 (+)
LOC120570306 NA coding upstream 1446748 10099932 ~ 10104167 (+)
pnkd pnkd,LOC100703611,LOC104967495 coding downstream 5655 11587008 ~ 11595507 (+)
gmppaa gmppa coding downstream 16521 11597874 ~ 11608077 (+)
asic4a asic4,LOC102777753 coding downstream 161982 11743335 ~ 11838604 (+)
LOC120570467 pdxk,LOC103353978,LOC100702179,LOC102214826 coding downstream 277099 11858452 ~ 11867638 (+)
agpat3 agpat3 coding downstream 287884 11869237 ~ 11899174 (+)
G123279 NA non-coding upstream 125664 11409670 ~ 11425251 (+)
G123184 NA non-coding upstream 608012 10940052 ~ 10942903 (+)
G123181 kdelc1 non-coding upstream 617560 10931682 ~ 10933355 (+)
G123172 nepro non-coding upstream 628614 10919046 ~ 10922301 (+)
G123148 LOC105912973,LOC105900140,LOC105893694,LOC105893089,LOC105940532 non-coding upstream 749062 10801489 ~ 10801853 (+)
LOC120570367 NA non-coding downstream 37243 11618596 ~ 11634792 (+)
G123322 NA non-coding downstream 262027 11843380 ~ 11845465 (+)
G123323 NA non-coding downstream 264320 11845673 ~ 11846949 (+)
G123324 NA non-coding downstream 265704 11847057 ~ 11847386 (+)
G123374 NA non-coding downstream 433419 12014772 ~ 12016505 (+)
LOC120570060 NA other upstream 290273 11251917 ~ 11260642 (+)
lrp1bb lrp1b,LOC102779748 other upstream 932219 10335991 ~ 10618696 (+)
umps umps other upstream 1622024 9920624 ~ 9928891 (+)
G122846 NA other upstream 2754169 8795453 ~ 8796746 (+)
hdac4 LOC103356262 other upstream 3234222 8170700 ~ 8316693 (+)
serp2 NA other downstream 426304 12007657 ~ 12013200 (+)
G123539 sept10,LOC102785043,LOC103375466 other downstream 1468405 13049758 ~ 13279866 (+)
G123633 NA other downstream 1771953 13353306 ~ 13354085 (+)
cps1 cps1 other downstream 2054201 13635554 ~ 13696334 (+)
G123742 NA other downstream 2651979 14233332 ~ 14234070 (+)

Expression


Co-expression Network