pnkd (pnkd,LOC100703611,LOC104967495)


Basic Information

Item Value
gene id pnkd
gene name pnkd,LOC100703611,LOC104967495
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 11587008 ~ 11595507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817661.1
TCCGGGGTTGCTACGTCATTACGTTTCGCTGCAGAGGCTATGGCGCTTCCTGAGTCGATGATAACGCTGGTTGCCACGGTTGCCACCGCATCTTTCTTCTGTTTCTTCTGTTTATGTGTTCGCTACAGACGCAAAGTGCTCTGGAGAAAATTGTTGAGCAAAATAATGGCCCGCACGGAGAAGCCGTTGTTCCGAATCGCGTACACGCTCTACACGAGGACCAGACTCGGCTACATGTTCTACAAGAGACAAATGAGAAAAGCGCGAGAAAATTTCCCTGCTGGACATTCCACAGCTCAGGCCATGGAGTTCAATGGTATTAAAATAATTCCCATCCCGGTGCTGTCTGACAACTACAGCTATCTTGTAATTGACACAGCCTCCAGTGTTGCGGTTGTTGTAGACCCTGCAGACCCTCAAACAGTGCAGGAAGTTCTCAAGGCAGAGGGAGTGACTTTAGAAGCAATACTCTGTACACACAAGCATTGGGATCACAGCGGGGgaaacaaagggttgaaaagaCTTCACAGCTCATGCAGAGTTTATGGAAACGCAGCCGATAACATTCCTGGCCTCACGCACCCTCTCTCACACAAGGAGTCAGTCACAGTTGGCTGTATGCACTTTAAGGCCCTCTTCACTCCTGGACACACAGTGGGCCACATGATCTACCTCCTGGATGGCCGGGCGCTCGACGCCCCCTCCAGCCTCTTCTCTGGTGACCTGGTGTTCCTCTCAGGTTGTGGGAGGGTGTTTGAAGGCAGTGCCACAACAATGCTGTCCTCTCTGGACACAGTCGCCTCCCTAAGTGATGATACTTTATTATGGCCTGGTCATGAGTATGCAGAGGACAACCTACTGTTTGCTGCTGAAGTTGAGCCTCGCAACGCTGCCAGGGAAAGCAAATCTCAGTGGGTGCTGCAGCAGCGAGGCCAGAAGCTGTGCACGTGTCCCTCCACTGTCGGAGAAGAGAGGCAGTACAATCCTTTCCTGCGCAGCCACTCTGCAGACCTCCATCTGGCCCTGGGCGTCGAGCAGTTCCAGGACGAAGACTGGACCCAGTTCAGGGCTCGGGTGCTGGAGGAGCTGCGAAAACGCAAAGACCTCTTTAACAGGAGATAGTACTGGAAACACGTAGGCCAGCTAAACACTGGCAAACAGAGGAGCGAGCTCACCTGTACTGGACAGTGGTACATTGTAAAACAAAGATGAGCAGAGCTCTTAGGTACGAAATGaaagtctgttcaaagaaaCCGGTTTTGTAAAAAAGGGGTATTAAGTCATTTTTGACCATGAGGAACATAGTGGTAACTTCATTATTACATGATACTGATCAATAAGCCTATTACCTCTCCACACACTGTAGAGTATCTCATGctaattttaataataaatgatTGCCTCTTTAACTTCGAGACATGAACAATAACATAGATCTGCATGTGTAACTTTCTGTTATTTTAGGTACAGGCTAATTTCTGATCCTGGTGTGTGAAGCAGAACAGGTCTGCACACTACATGGGTTAATTAAGCATGTTAGGTACTGTATTGTTATTGCGTAGTCTGGTTCATTGTTAAGGTAAGAAatacattgtttaaaaaaactgacTTGAAAATCTTTGGTATGCTGGATTTACTTTTACAGTGTTGCTGAAGAGTAATTAACTTCTCCATGGCAGTTGTGATTTTTGGACTTGAGTTATTGATTGtaaatatttgatttatttagttatATTATTTTCAACAATATATTGGTACGATAATTTAACAAATCACAAACACTCTTCGCTGTCCGTACTTTGTGCCAGCACAATGTATGGGGGAATGTCTGTACACTAGCCTttcatgtggatttttattTGCTGAATCTAAGAGCCAATTAAGTATTGATGTAAAAGAGATTTTGCTTACGTTAGTTCTTTACGATGCATGTGATTGAGCCCTGTTTTGCTTTTTGCCCCCTAAGTTTCATTTTGTAATTCACTATATCATGTTTTGATTCACTGGGACCCACAGGTATTGGAGGtggaacacattttttttctagtTGCACAGCATGAGCGTGAACGTGAACAACAACACGTGTGAAGGATTAGACTGGTAGCGCATTGCCATGTATGAGACGTGACTGAATCGCTGTTGAAGGGATGATGGAAATAATTTAACGACGTACAGGGTGATGTTGAATCAAGCAATCTGAACGCACACACTATGTTTTGCAataactttttttacttttgtttaaaatgtgttaatatTTAAGAGTAAGATGGTGATGGAAATATTTCTAATTTTCTTTTCCTAATATGAGAATACAATGTGACATTGACTGCAATACTCTTTAACATTTCAGAAGGAATGTTTTATAGCCAATTTGAAAACTTTGGAAACcaaaattttatatattttttaatatattgaaGAATTTATTATACTGCGACAATACAATGGATGCACATTATTTCAGTATAATAAAAAATCTTCCCACGCACATATGAATAGTTTTCTTGTGTATGTTTTCATGCAAAGGAAATGTAACTCAGATGGAGATGGGCCAGAATGCAAAGGAGCTATATACACTCTTCAGATGCCTCCATTCCTCCTGCAGTAGGGCTTGTATCAAAGCACCTTGTCCCCTGGTGGTTGTTGACTAAAATGTTATTCTGTTTGTTTGATGCAGATTCCCATCTTATTTGCATATGTTTGAGTTATGAATACCACCACATGGGAGACATGTTTTGTGATGTTTTACTTCAGGTTACGTTTTAATGAGGAAATGTGAAAGTAAACTTTCATTCATTA

Function

symbol description
pnkd Predicted to enable hydroxyacylglutathione hydrolase activity and metal ion binding activity. Predicted to act upstream of or within methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in paroxysmal nonkinesigenic dyskinesia 1. Orthologous to human PNKD (PNKD metallo-beta-lactamase domain containing).

NR:

description
probable hydrolase PNKD

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004416 hydroxyacylglutathione hydrolase activity molecular_function

KEGG:

id description
K23864 PNKD; paroxysmal nonkinesiogenic dyskinesia protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817661.1 True 2802 mRNA 0.42 9 11587008 11595507

Neighbor

gene id symbol gene type direction distance location
dars1 dars,LOC102778528 coding upstream 5655 11550915 ~ 11581353 (+)
LOC120569661 NA coding upstream 40706 11544608 ~ 11546302 (+)
nxph2a nxph2,LOC101474521 coding upstream 411068 11156590 ~ 11175940 (+)
rabl3 rabl3,LOC102779363 coding upstream 452864 11130057 ~ 11134144 (+)
LOC120569327 LOC103358003,LOC100710305,LOC102781664,LOC101475894 coding upstream 1369358 10211110 ~ 10217650 (+)
gmppaa gmppa coding downstream 2367 11597874 ~ 11608077 (+)
asic4a asic4,LOC102777753 coding downstream 147828 11743335 ~ 11838604 (+)
LOC120570467 pdxk,LOC103353978,LOC100702179,LOC102214826 coding downstream 262945 11858452 ~ 11867638 (+)
agpat3 agpat3 coding downstream 273730 11869237 ~ 11899174 (+)
LOC120569371 NA coding downstream 305201 11900708 ~ 11906825 (+)
G123279 NA non-coding upstream 161757 11409670 ~ 11425251 (+)
G123184 NA non-coding upstream 644105 10940052 ~ 10942903 (+)
G123181 kdelc1 non-coding upstream 653653 10931682 ~ 10933355 (+)
G123172 nepro non-coding upstream 664707 10919046 ~ 10922301 (+)
G123148 LOC105912973,LOC105900140,LOC105893694,LOC105893089,LOC105940532 non-coding upstream 785155 10801489 ~ 10801853 (+)
LOC120570367 NA non-coding downstream 23089 11618596 ~ 11634792 (+)
G123322 NA non-coding downstream 247873 11843380 ~ 11845465 (+)
G123323 NA non-coding downstream 250166 11845673 ~ 11846949 (+)
G123324 NA non-coding downstream 251550 11847057 ~ 11847386 (+)
G123374 NA non-coding downstream 419265 12014772 ~ 12016505 (+)
LOC120570060 NA other upstream 326366 11251917 ~ 11260642 (+)
lrp1bb lrp1b,LOC102779748 other upstream 968312 10335991 ~ 10618696 (+)
umps umps other upstream 1658117 9920624 ~ 9928891 (+)
G122846 NA other upstream 2790262 8795453 ~ 8796746 (+)
hdac4 LOC103356262 other upstream 3270315 8170700 ~ 8316693 (+)
serp2 NA other downstream 412150 12007657 ~ 12013200 (+)
G123539 sept10,LOC102785043,LOC103375466 other downstream 1454251 13049758 ~ 13279866 (+)
G123633 NA other downstream 1757799 13353306 ~ 13354085 (+)
cps1 cps1 other downstream 2040047 13635554 ~ 13696334 (+)
G123742 NA other downstream 2637825 14233332 ~ 14234070 (+)

Expression


Co-expression Network