rpe (LOC101467395,LOC103352918,LOC103134215,LOC106919839)


Basic Information

Item Value
gene id rpe
gene name LOC101467395,LOC103352918,LOC103134215,LOC106919839
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19465724 ~ 19468732 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817709.1
GTGTTAGCTGCATGCAGTGCAGACAGTAACagccatactgtctatggtaacAGCATGGCTTACAGTGCGAAGATCGGTCCGTCCATCCTGAGCAGCGACCTGTCCTGTCTGGGCAGCGAGTGCGTGCGGATGATGGAGTGCGGGGCAGATTACCTGCACCTCGACGTTATGGACGGGCACTTTGTCCCAAATCTCACATTTGGACATCCCATGGTAGAGTGCCTCAGGAAGTCAGTAGGCCAAGACCCTTTCTTTGACATGCACATGATGGTGTCTCGGCCAGAGCAGTGGGTGAAGCCCATGGCTGCAGCAGGAGCCAACCAGTATACGTTCCACATAGAGTCCACCACCAACCCTGGTAACCTCATCAAGGAGATAAAAGAGAGTGGCATGAAGGTGGGTTTGGCTATAAAGCCTGGTACTACTGTTGAAGAGCTAGCACCCTGGGCTAACCAGATCGACATGGCTCTGGTCATGACTGTTGAACCTGGCTTTGGAGGGCAGAAGTTCATGGACGACATGATGCCCAAGGTGAGCTGGTTAAGGAGTCAGTTTCCTTCATTAGACATTGAAGTAGATGGAGGAGTCGGCCCTGACACCATTCACAAATGTGCAGAGGCAGGAGCCAACATGATAGTGTCAGGCAGCGCTGTGATAGGCAGCGACGACCCTCGTTCTGTCATCTCTCTCCTGCGCACCGTGGTGGCCGAAGCAATCCAGAAACGTTCGCTGGACCGCTGAGCTGTCCTCTTTGTGACACCCTACCTGCCCGTTCCAGCAACACAACTCAACTTCCACACAGCCACTGGAACAGACTCAAAATGGACATTTCTGGGTTTGAGGTCAGGGTTCACGGTCAGAGCATGGGGCTGGTGGCCAAATCCAAATCACTTTGATGTGAGTGAAGCTGAACTGTGCCTCCTACAAAAATTTTTGAACTTCATTCTGTCCTGCCACAATCTCCTCTTTTGAACAGTTAACTCAAAGTGAGTCTTATCTCAGCATGGGGATAACCATTTCGAGACTGGAGCTGAGGTGATGCTTACTTCACATCTGTAAACATTCCTGAATATTGTTTGACACAGTCTTAAGTGTAAATTAGTCATGGAAATAAAATGGTCCAAGGAGCACTGTGTTTGGAATATCTTCAGTTTTGCAAGTCATTTTCCGAAATCATGTATCATACTtcattaaacaaatgttttCGCTCTTT

Function

NR:

description
ribulose-phosphate 3-epimerase

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0004750 ribulose-phosphate 3-epimerase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01783 rpe, RPE; ribulose-phosphate 3-epimerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817709.1 True 1213 mRNA 0.49 6 19465724 19468732

Neighbor

gene id symbol gene type direction distance location
klhl6 klhl6,LOC102796948 coding downstream 110434 19349763 ~ 19355290 (-)
LOC120570610 NA coding downstream 116665 19338941 ~ 19349059 (-)
LOC120570636 LOC104963478 coding downstream 243779 19214753 ~ 19221945 (-)
fancb fancb coding downstream 269879 19189183 ~ 19195845 (-)
gpm6bb gpm6b,LOC100694635 coding downstream 307659 19128224 ~ 19158065 (-)
ackr3a ackr3,LOC104934108 coding upstream 22779 19491511 ~ 19498560 (-)
casq2 LOC103352915,LOC101061703,LOC100712579,LOC102192454 coding upstream 82594 19551326 ~ 19556641 (-)
LOC120570428 kcne2 coding upstream 88778 19557510 ~ 19559519 (-)
LOC120570427 LOC103352913,LOC100708017,LOC104953986 coding upstream 102139 19570871 ~ 19575591 (-)
acp6 acp6 coding upstream 226719 19695451 ~ 19702019 (-)
G125299 LOC103352919,LOC102305963 non-coding downstream 6479 19454417 ~ 19459245 (-)
G125295 igsf3,LOC103352919,LOC104967650,LOC105938266 non-coding downstream 25873 19439426 ~ 19439851 (-)
G125294 LOC104967650,LOC103352919 non-coding downstream 29677 19435642 ~ 19436047 (-)
G125293 LOC103392014,LOC104967650 non-coding downstream 33293 19432064 ~ 19432431 (-)
G125227 NA non-coding downstream 259783 19201746 ~ 19205941 (-)
G125311 LOC103352916,LOC105938264 non-coding upstream 78983 19547715 ~ 19550418 (-)
G125315 NA non-coding upstream 100878 19569610 ~ 19570807 (-)
G125398 bcl9 non-coding upstream 209269 19678001 ~ 19680728 (-)
G125411 NA non-coding upstream 261723 19730455 ~ 19730711 (-)
LOC120569251 NA non-coding upstream 313361 19782093 ~ 19782621 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other downstream 206878 19231987 ~ 19258846 (-)
G125090 NA other downstream 761047 18700887 ~ 18704677 (-)
G125089 dct,LOC102781940 other downstream 765922 18695480 ~ 18699802 (-)
prkra prkra other downstream 1301975 18156732 ~ 18163749 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other downstream 1350627 18113110 ~ 18115097 (-)
G125326 dopey2 other upstream 127197 19595929 ~ 19597521 (-)
si:ch211-214p13.3 NA other upstream 282969 19751701 ~ 19768586 (-)
LOC120570223 NA other upstream 321320 19790052 ~ 19796220 (-)
si:ch211-214p13.7 NA other upstream 452536 19921268 ~ 19923735 (-)
G125619 col4a2 other upstream 990430 20459162 ~ 20461629 (-)

Expression


Co-expression Network