col5a2a (col5a2,LOC103365627)


Basic Information

Item Value
gene id col5a2a
gene name col5a2,LOC103365627
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 6148572 ~ 6228385 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817710.1
CAAAAAAAAGCACTCACGCAGTCTGGGCTGGGTCTGCTTACTGCTTACAAGGAGAGCTACTCTTGTATTCATGGTGGCGCAGTGATAAcctgagcatttttttttttttttgttgccttttcatCCTTTTCCCCCCTTGCTTTACGCACAAGGACGGCTCATGTCTTTTCTATAGACATGATGAGCTCTGTGCATTTAAGGACTTTCTTTTTTCTGGTAGTCTCCGTAGCTCAGGTTTTGATTGTTACATGTCAAGACGGGAACAGTGGAGATGACTTGAGCTGCACGGCGGACGGCCAGGTGTACACCAACAGGGACATCTGGAAGCCAGAGCCATGccgaatctgtgtgtgtgacaacgGCCAGGTCCTCTGCGACGAAATCCAGTGCGATGAGCTGACTAACTGCGAGAAGGTGGTCATCCCCGAGGGCGAGTGCTGCCCTGTCTGTCAGACTGATTCACAGGGCGGCGGTGGAGGCGGTGGAGGCGGGCGGAGGCGGCGGCGGCGGGCGGCGGTGGCGGAAGGTCAGAAGGGAGAGCCCGGAGATGTGCCACTTGTGACTGGCATCAGGGGCCGCCCTGGACCTATGGGACCTCCCGGCTCTCCAGGAGACAGAGGATCTCGAGGACACAAAGGCAGGCCTggaCTGCGGGGCCCTCCAGGTTATGATGGAGAGCCTGGTGTACCAGGTCAACCCGGTGAACCAGGACCTCCAGGACCTCCAACGCACCCCGGAGGCCTGGGATCCCAGATGGCTGGAGGCTTCGATGGAAAAACAGGACCTCAGGCCATGTTAAGTGGCGCAAGGGGCGAGGCTGGAGCAAGAGGCCCTCCCGGGCCAAACGGCGCACCTGGTCAAGCTGGACCCCAAGGACCACCCGGAGATGTCGGCGATCCAGGACATATGggTCCATCTGGGCAAAGGGGACCTGAGGGCCCTCCAGGGAAACCAGGTGAAGATGGAGAGCCAGGCAAATCAGGAAATAGCGGAGAAATTGGATTCCCTGGATCACCAGGATCCAGAGGATTTCCAGGTACACCTGGGCCTCCCGGACTGAAGGGTCACAGAGGCCATGCTGGAATAATTGGCCAAAAAGGTGAAACTGGATCTGTTGGATCCAAGGGTGCCACAGGGCCCCCTGGTCAAATGGGAGCACCTGGACCCATGGGTCCTGCTGGGATGCCAGGGGAGAGAGGACGCTCTGGACCCAGCGGTGTAGCAGGTAAACGTGGCGACCCTGGTAACGTCGGAAAGCCTGGTCCAATGGGTCCCTTGGGTCTTAGTGGTCCACCTGGATATCCAGGAACCCCAGGAATGAAGGGACAACCGGGCCCCACAGGAGTCCGGGGTCCAGAGGGCCCACagggacagagaggagagaccgGTAATATGGGCAGAGCTGGACCAACTGGCCTCCAGGGCCCCGCGGGTACAGATGGTGGCCCGGGTACCAAAGGACCAGTGGGTAATCTTGGTCCACAAGGTCCAGGCGGCCATGTTGGACCCCATGGACCACCAGGACCTCAGGGAAGCACTGGTCAGCCTGGTATCAAAGGATCACTGGGAGATGTTGGTGTGCCAGGATTTAAAGGAGAGGCTGGACCCAAAGGAGAAACTGGTCCGCCAGGTTCCCAGGGAGTGCTTGGACCTCAGGGTGAAGAAGGAAAACGAGGACAACGTGGAGACCCCGGCACTGTGGGCCCTCCTGGTCCCGTtggagagagaGGATCTCCTGGTAACAGAGGATTCCCTGGTGCCGATGGGCTGCCAGGACCTAAGGGTGCTCAAGGAGATCGTGGGACATCTGGCCCACCAGGGCCCAAAGCTTCTGTAGGAGACCCTGGGCGTACCGGAGAACCTGGTCTACCAGGTGCAAGGGGTCTTACTGGTACCCCTGGAGTGCAGGGAGCAGAGGGCAAGCCAGGACCATTGGGGGCTCCAGGGGAAGATGGTCGCCCAGGCCCCGCAGGGTCCATTGGAAACAGAGGGCCCGCAGGAATCATGGGAGGGCCAGGCCCTAAGGGCTTCAGTGGTGACCCAGGAAAAACAGGGGAACAAGGATCTGCAGGAGTGTCAGGTCAAAGAGGTCCCCCTGGCAAAGATGGAGAAGTTGGCCCTGCTGGCCCCCCCGGCCCAGCTGGTGTCgcaggagaaagaggagagcagGGACCTCCAGGTGTAAATGGATTCCAGGGTTTGCCTGGAAACCAAGGCCCTCCTGGAGAGCCTGGAAAACCCGGTGACCAAGGTATTCCTGGAGAGCTGGGTAACGTGGGCCAAATAGGACCAAGGGGAGAGCGAGGTATTccaggggagagaggagagctgGGTTCAACTGGTCTGCAGGGACCCAAGGGTATCCCTGGTGCACCTGGTCCAGATGGGCCAAAGGGTAGTCCTGGTCCCCCTGGGACGCTTGGTGACATGGGTCCTCCAGGTCTTCAGGGAATGCCAGGAGAGAGGGGCATCTCTGGCCCTTCTGGGCCTAAAGGGGACAGAGGAGCACTTGGTGAAAAAGGATCAGAAGGTACAGCTGGGAATGACGGTGCACGAGGAGCCCCGGGTCCTGTTGGCCCGCTAGGATCCGCTGGACCCAGTGGTGAAAAGGGTGAACCTGGACCCAAAGGACCACATGGACCCCCAGGATCCAGAGGAGTACCAGGAGCGAGAGGCGACCCTGGCCCAATTGGTGCTGTTGGATTTGCTGGACCTCCTGGTCCTGATGGCCAACCTGGAGTCAAGGGAGAGCCTGGAGAACCAGGCCAAAAAGGAGATGCTGGATCACCAGGACCTCAAGGCTTGTCTGGTGCTCACGGACCTCCTGGGCCAACTGGTGTTGCTGGACTGAAAGGCGGAAGAGGAACACAGGGTGCACCGGGCCCAACTGGCTTCCCTGGATCTGCAGGACGAGTTGGCCCCCCAGGCCCCACTGGTCCAATTGGAGAAGCCGGACCCCTTGGACCTCCTGGGAAAGAGGGTCCTGCTGGTCTGCGTGGAGACCATGGAGCCCCTGGGAGACAAGGAGAGCGAGGACCAGCAGGGCCACCCGGAAGCCCAGGAGACAAAGGGGACTCTGGAGAAGACGGACCCACGGGTCCTGATGGTCCTCCAGGCCCAGAGGGAACTACAGGACAGAGAGGCATTGTGGGTCTTCCTGGTCAGAGAGGAGAGCGTGGGATGCCAGGCCTTCCAGGACCTGCTgggccCCCAGGAAAACAAGGATCCGCAGGAACACCTGGAGATAAAGGCCCCCCAGGTCCAGTCGGTGTCCCAGGTGCTAACGGACCTCGTGGTGATCCTGGTCCTGATGGCCCTGCAGGAAGTGATGGCCCACCAGGAAAAGATGGCGTTCTGGGACAAAGAGGAGACCGAGGAGATCCTGGTCCAGAAGGTTTGCTTGGTCCTCAGGGACTTCCTGGCCCTCCAGGTCCTGTCGGTGCACCGGGTGATGCTGGACGGAGAGGAGAtgctGGCTCAAGAGGACCCGTTGGTCCCCCGGGCTCGGCTGGGAAGAGAGGATTAGTGGGACCCCAAGGACCAAGAGGAGATAAGGGTGACCTGGGAGATCATGGAGAGAGAGGGCAGAAGGGACATCGAGGCTTCACTGGTCTGCAGGGTCTTCCTGGACCTCCTGGTACAACAGGTGAGCAGGGAGCTCCAGGAATCGTTGGACCAAGCGGACCCAGGGGGCCTCCTGGACCTATCGGGCCTTCTGGAAAGGAAGGATACATTGGCCAGCCTGGACCGATGGGGCCTCCTGGAACCCGAGGAATCAGCGGAGAAATCGGACCAGAGGGCCCTCCAGGAGAGCCTGGCCCCGCAGGCCCCCCTGGTCCCCCAGGACCTCCCACGGCTGCTATGGATGACCTCTTTGGCAGCGGCCCTCAGGATTACGACTCgggcccccctcctcctccggAGTTCAGCGAGGACGAGGCTCTGCCCAACAGCAACGCGTCCAGCATAGTGGCCGTGGACCCGAGCATCCACGCCACCCTGAAGGCCCTCAGCAGCCAGATCAACAGCATGAAGAGCCCCGACGGCAGCAGGAAACATCCTGCCAGGACCTGTGACGACCTCAAGAGATGCTACCCCGACAAGAAGAGTGGCGAGTACTGGGTGGATCCAAACCAAGGCAGCGTGGAGGACGCCATCCAAGTGCACTGCAACATGGACACCGGAGAGACCTGCATCACGGCTAACCCATCCAGCATACCTCGTAAAGTGTGGTGGAGCGCTTCCAGGAACAAACCTGTGTGGTTCGGAGCCGACATCAACCGTGGAACACATTTCACTTACGGCAACAAAAATCAGCCGGGAAACTCCGTCACCGTTCAGATGACTTTCATCCGCCTGCTCTCCAAAGAGGCGTCTCAGACCATCACGTACCACTGCAAGAACTCGGTGGGCTATAAGGACGAGAAGGCGGGCAACTATAAGAAAGCTGTAGTCCTCAAGGGCTCCAACGATCTGGAGCTCAAAGCAGAGGGAAACAACCGCTTCAGATACACAGTGGTGGAGGACTCCTGCTCACAACCAAATGGCAACTGGGGAAAGACAGTGTTTGAGTACAGGACACAGAAAACTGCAAGACTTCCTATTGTGGATATGGCCCCTGTGGACATTGGCGGCCCCGATCAAGAGTTCGGCATCGACATCGGGTCCGTGTGCTTCTTGTAAAATCGTCAGCAGGGATGCGTCGAGGAGAATCCTGAGACTATTGAACTGACAGCTGACACGATCAGCCACATTGTACATACGAGTACTGAGGACTATTCTGGCCCTGTGGCAAGATATTTATTGTGCCTTTCAACCCAGTTCAAGACATCGAAGATTTGTAATTTAGAATGAACTTTTACAATTTACTTCAAAATTGGTAAAAATCAGAATCATTCCTCTGTCTTCTTGTGTATGTTTGACCCCAAATGTAATGCATTTTGAGGCTCACTATGGTGAGGTTTGGTCCAAAGATATTAccctttaattttattttttaacaaaacattgcCAAAGATTAATGAATATGAAAGCTTTAAAATGGTGGTTATACCTGCTGTTCATAGGCTTTAAGAAATCCCACCGAAGCTATGTCCAATGTCCCTTCACTTCTATTTTTTACAGATTTgtctatttgttttttttgtgtgaaatgtttgcaTATACAACAACATTGTGGTGCTATTGAGGATACAAATACAGCCGATGATGCGTTCACCGACGCAGGTATTTTTTCAAGACAGTTTTGATGAACCAATGTCTGTATCCAGTTATGTTAAACTCTGTACCGATCACGTAGAACATTAAAGACACATTAAGACTGTCAATTTCTCAGTGTTAGCTACCTCGTCACCGAAACTGAGAAACGATGACACTACATGTAAATCTTTTTTCACAGGTGCTGTTTTGTAAGTAGTGTGATCCTTGTGCACTCCTCCCGGCCGCGCGGTACAGGGCAGGGTGTGGGGATACCAATAAAGATCTTTCTGTCGATGACGGAGAGACGAATGAGGTGT

Function

symbol description
col5a2 An extracellular matrix structural constituent conferring tensile strength. Involved in animal organ development; collagen fibril organization; and negative regulation of endodermal cell differentiation. Located in collagen-containing extracellular matrix. Part of collagen type V trimer. Implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome classic type 2.

NR:

description
collagen alpha-2(V) chain-like

GO: NA

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817710.1 True 5516 mRNA 0.56 53 6148572 6228385

Neighbor

gene id symbol gene type direction distance location
LOC120569363 NA coding upstream 138830 6001841 ~ 6009742 (+)
LOC120569854 LOC103364251,LOC104945362,LOC101061545 coding upstream 211451 5922694 ~ 5937121 (+)
LOC120570043 NA coding upstream 578214 5567426 ~ 5570358 (+)
tns1b tns1 coding upstream 596410 5304566 ~ 5552162 (+)
LOC120570203 LOC103368839,LOC101465291,LOC102206386 coding upstream 851969 5289083 ~ 5296603 (+)
tfpia NA coding downstream 211995 6440380 ~ 6514677 (+)
calcrla LOC104930425,LOC103374150 coding downstream 288472 6516857 ~ 6565305 (+)
obsl1b LOC102294552,LOC102213482,LOC101473351,LOC103371765,LOC108244293,LOC107092720,LOC106522278,LOC103461888,LOC106964354,LOC106906652 coding downstream 777182 7005567 ~ 7044051 (+)
slc39a10 slc39a10,LOC100706809 coding downstream 1665495 7893880 ~ 7926521 (+)
parp9 NA coding downstream 1842293 8070678 ~ 8077603 (+)
G122415 NA non-coding upstream 30308 6117876 ~ 6118264 (+)
G122398 NA non-coding upstream 48446 6099756 ~ 6100126 (+)
G122396 NA non-coding upstream 52603 6095720 ~ 6095969 (+)
G122395 NA non-coding upstream 53893 6094277 ~ 6094679 (+)
G122394 NA non-coding upstream 56563 6091646 ~ 6092009 (+)
G122441 NA non-coding downstream 114178 6342563 ~ 6342789 (+)
G122443 NA non-coding downstream 138763 6367148 ~ 6367449 (+)
G122446 NA non-coding downstream 182649 6411034 ~ 6411239 (+)
LOC120569780 NA non-coding downstream 348694 6577079 ~ 6577835 (+)
G122472 NA non-coding downstream 353428 6581813 ~ 6589701 (+)
ybey ybey other upstream 936670 5209102 ~ 5211902 (+)
G122226 NA other upstream 982674 5164233 ~ 5165898 (+)
LOC120569936 LOC102781033,LOC104920804 other upstream 1078324 5060001 ~ 5070248 (+)
fkbp7 fkbp7,LOC102196462,LOC104949636 other upstream 1165593 4974789 ~ 4982979 (+)
G122128 NA other upstream 1253070 4894785 ~ 4895502 (+)
G122588 NA other downstream 918240 7146625 ~ 7149039 (+)
hdac4 LOC103356262 other downstream 1942315 8170700 ~ 8316693 (+)
G122846 NA other downstream 2567068 8795453 ~ 8796746 (+)
umps umps other downstream 3692239 9920624 ~ 9928891 (+)
lrp1bb lrp1b,LOC102779748 other downstream 4107606 10335991 ~ 10618696 (+)

Expression


Co-expression Network