cerkl (cerkl)


Basic Information

Item Value
gene id cerkl
gene name cerkl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 24089309 ~ 24125727 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817749.1
TGAGTCCGGTAAAGCTGCCGCCTGTCTCCATAGCGACGACACCCCGGAAATACAACATAACCTTCAGAGGTGATCATCTTACCGTGTGTTTAGCTCTGCCGCTTTGTTTATCGAAGAGGAACAAACTCATACCAGAGttggtctgtttgtttgttttgttcgtCGGTTGAGCCTGTAAACATGTCGGAGCCTGAGGAGGAGCTGCAAGGAGAACAGAGAGACAGcacgaagaaaaagaagaaagaaaaacgaagcgccaagaagaagaagaagaaggaggaggaggaggaggaggaggagggggggaagcgggaggaagaagaagaagagcagcaggtggatgaggaagaggagcacaGtgagtgTGTTGTGCTGCGTGGGATCTTCAAACTGGGGAAGAAGAGTCACGACGTCCTGCTTACCCGAACCAGGCTGACATGGATCCCCATCACTCCGGAGACCCCCACAGGTGAGGCGTGCGTGCTTCAGCCAGGTGTGATGTTGCTGCAGGATGTCTTTGCGGTGAAGGTGAAGCGGCGGCGAGCTGTGGGCCAGCAGTCGGGGGGACCCGTGCTCGGCGTGGCTCTGTTCTGctgcagaagaagaggaaggaggctAGAGGAGGACACGGTGCACCTCCACAATGCCTCCGtagaacacatacacacctggTACAACACCCTGAAGGAGCTGCTCACAGgGTCCAGCAGTCGTCCCAGGTATCTTAAGGTGTTCATCAACCCCAGCAGCCACAAGAAGGAGGCCGTACACATCTACAGAGAACATGTGGCTCCACttttcaagatggctgacgtCCGCACTGACATTACTGtgaCAGAGAGGAAAGGTCATGCTCTCTCAGTGATGAAGGAATGCAAGCTGGATGAATATGATGGggttgtgtgtgttggtggggaTGGTTCGGTGGCAGAGCTGTGTCACGCTCTGGTCCTCAGAGCTCAACTGGATGCTGATTCTCCAGAGAAACCAGTGACACCAGTGCTGCCTCTTGGAATCATTCCTGCtgGTTCTACAGACGTGGTTTCCTGTTCTGTTCACGGAGTCAGAGATCCAGTCACTGCAGCCCTGCATATCATCCTAGgtcaCCTGCAGCAGGTGGACATGTGCAGCTTCTCGTCTCTCGGACAGTTGGTGTGTTTtggtttctccgccatgttcgGCTTCGGTGGCCGAAGCTTAGCTCGGGCAGAGAAGAAGAGGTGGATGCCGTCGTCGCGGCGACGAGAGTACGCTCTGGTGAAGACACTGGCTAGGCTgagACCAGAAGACTGTCAGCTGTCTTTTCTACCAGTGAAGAAGTCAAACAgagaccaggaccaggacccaGAGTCAGGAGGGGAGGAGTCCTGGACGACCAATCAGGGCCTGTATTTGAGCATCAGCATCATGTCCATCCCCTGTCTGAGTCCACACACACCTCAAGGACTGGCTCCCAACACTAATTTAGCAAATGGCAGTGCTGCATTGATTGCAGTAGGAAATACTTCCAGGTCAGAGTTCATCAAACATCTGAAGAGATACAGCGGCAGTAGTGGACAGTTCAGCTTCTCATTCGTGGAGACGCACACCGTGTCAGCTGTGAAGATCCGTCCCCGCTCACTGATTGGCTGGTCGGAGGAAGAGAGCGAGGAAGAGGGCGAGTCCAAAACCTCGCCCATCATCCAATCGGAGGGAGCCACCTTCCCCTGGAACATCGACGGAGAGCTGGTGGAAATTGCTAACGAAGTGCTCGTCAGggtcCACCCACGACTCATCACTCTGTACGGGGAGGAGGTGGACGAGGCTGAGTCGACCGTCTCCTGCAGCTGCATCTGAGTCTAGCCGAGGGTGCCCAAAGGCGCCCTCTCTAGGTCATTACTGTTTCCATCGCGATGTGAACTAACGTAGACGTTTCATTCAAAGTAGCAAAACACCTAAAGTAGTGACAGAGCTTTGCAGCTTCCTGTTTACAACATGAACGTTAAAGCTGCGTTGATTGATTTTCTTCTTTTGATTgattactgcagctttaattagctATAAGGTAACTTGTGTAAGCTACCTTTTAACTCCAAACTACCGTGCTTTATAAACGTTGATCACTTCTAGACCTGATTGTTGAGGATACATTgaggatactttttttttttttattcaaattaatgtttacattttactaTATCTTAACTACCAGCTCTTCTCACATGACTTGATTTTATTCTAATTTGTGTTGCctattgttttttattgcaattttcattttgttttatctgGTCCAgtttctggttctgctgcagaGGGCAAATATTCATCTGTAATTTAAACCTATACTTTGATTTACATGTGAGCTAAAAATAGTTAATTGAATCCAACACTGAGGAAAAGAGTTTATTTTCCGTGTATTGATTCTCTTTGAATAATGTTAAGTTGGTGATAGTCAAGCAGCTTTCTGTACAGATGAGCAGAGCCAGACTGGATAAGCCCAAAGTGTCCAACATTTTATATACTACATATGACAGAGCTGTTTTTATTTAGAagctttttaaagtgtttttttttattgagataATGCAGATCTTTAGAGTAAGCGCTGTAATGATGAGAAAAAAGGTGTTGTTTAAATAGAAAATCCTTCATTTTAATAGAAAAGTGTTGATAAAAGCAGTGAGACTCTCCAGTGCAGAACAACtttacataaacaaaaacaaaactaatgtattaaaatattaaaacatc

Function

symbol description
cerkl Predicted to enable lipid kinase activity. Acts upstream of or within several processes, including negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway; regulation of apoptotic cell clearance; and retina layer formation. Located in cytosol and nucleus. Is expressed in several structures, including eye; gill; heart; kidney; and optic cup. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 26. Orthologous to human CERKL (ceramide kinase like).

NR:

description
integrin alpha-4-like

GO: NA

KEGG:

id description
K19602 CERKL; ceramide kinase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817749.1 True 2736 mRNA 0.47 14 24089309 24125727

Neighbor

gene id symbol gene type direction distance location
rpl8 rpl8,LOC106586796,LOC107595836 coding downstream 55540 24030441 ~ 24033769 (-)
med14 med14 coding downstream 115619 23958247 ~ 23973690 (-)
si:ch211-269e2.1 LOC103357720 coding downstream 137618 23928533 ~ 23951691 (-)
shox shox,mog-12 coding downstream 263496 23817012 ~ 23825813 (-)
fgf14 fgf14 coding downstream 439694 23538738 ~ 23649615 (-)
neurod1 neurod1 coding upstream 4291 24130018 ~ 24134141 (-)
dnajc15 dnajc15 coding upstream 172569 24298296 ~ 24302866 (-)
ccnyl1 ccnyl1,LOC104923590 coding upstream 255860 24381587 ~ 24401907 (-)
creb1b creb1,LOC107389684 coding upstream 276886 24402613 ~ 24418003 (-)
klf7b klf7,LOC104923592,LOC108238840 coding upstream 339398 24465125 ~ 24535505 (-)
G126606 NA non-coding downstream 83649 24005059 ~ 24005660 (-)
G126597 LOC101470276,LOC102292608,LOC102197480,LOC100692635,LOC103357839 non-coding downstream 134939 23953403 ~ 23954370 (-)
G126535 NA non-coding downstream 375352 23713486 ~ 23713957 (-)
G126534 NA non-coding downstream 376039 23711987 ~ 23713270 (-)
G126533 NA non-coding downstream 378994 23709174 ~ 23710315 (-)
G126673 NA non-coding upstream 52730 24178457 ~ 24180149 (-)
G126676 NA non-coding upstream 55244 24180971 ~ 24182844 (-)
G126686 NA non-coding upstream 72152 24197879 ~ 24198556 (-)
G126695 NA non-coding upstream 77889 24203616 ~ 24203991 (-)
G126727 NA non-coding upstream 151451 24277178 ~ 24277430 (-)
si:ch211-218d20.15 LOC104960513,LOC101470276,LOC102197480,LOC102292608,LOC107099189,LOC100692635 other downstream 132103 23954846 ~ 23957206 (-)
gpr18 gpr18 other downstream 965401 23110033 ~ 23123908 (-)
klf5b LOC104962226,LOC103357491 other downstream 1121408 22962199 ~ 22967901 (-)
scel scel other downstream 1423837 22655579 ~ 22665472 (-)
katnal1 katnal1,LOC106527129,LOC104958633 other downstream 1460194 22615496 ~ 22629115 (-)
cnga4 cnga4,LOC103356095 other upstream 545495 24671222 ~ 24679011 (-)
G127032 neb other upstream 1573001 25698728 ~ 25701551 (-)
G127046 neb,LOC100194727 other upstream 1599347 25725074 ~ 25740126 (-)
arhgap20 LOC103357161,LOC102081671,LOC104942835 other upstream 2075435 26201162 ~ 26259576 (-)
gjb8 LOC103391957,LOC104941692,LOC103357168 other upstream 2377832 26503559 ~ 26508638 (-)

Expression


Co-expression Network