LOC120569729 (LOC103352860,LOC100709268)


Basic Information

Item Value
gene id LOC120569729
gene name LOC103352860,LOC100709268
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20649268 ~ 20664884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817757.1
CCTCTCACAGTCAGGAGCTAAACAGGGAGGGATCACAGGGATTCGGGACACTTCATCCGCTGTTGTCGACACGTATGTCCACCTGcgttgacatttttatttttaacggAAAATTCGTGACCATAACAGGGGTGCTTGATACTGGGAGGACGGCATGGGAGAGCTCACGGCGTTTCTGCTGTTACTGGTGGCGACCTTGACGCTTTCATCCGAGGTGCCTGCTGATGACTCTGTGGGGTTGCTAACTGAGCCCCAGGTGGCCATGTTCTGTGGGAAGCTCAACATGCATATTAATGTGCAGAGTGGCAAATGGGAGTCGGACCCCTCCGGCACCAAGAGCTGCATCGGCACCAAGGAGGGCATCCTGCAGTACTGCCAAGAGGTTTACCCAGAGTTGCAAATCACAAATGTTGTGGAGGCCAACCAGCCCGTCAGCATCCAGAACTGGTGCAAGAAAGGCCGCAAGCAGTGCCGCAGTCACACTCACATTGTGGTGCCATACCGCTGCCTGGTTGGGGAGTTTGTGAGCGACGCCCTGCTCGTTCCTGACAAATGTAAGTTCCTGCACCAGGAGCGTATGGACCAGTGTGAGAGCCACCTGCACTGGCACACTGTAGCCAAAGAGtccTGTGGAGACCGCTCTAAGAATCTCCATGACTACGGGATGCTGCTGCCATGTGGTATTGACCGTTTCCGAGGGGTGGAGTTTGTCTGCTGTCCGGCGGAGGCGGAGCGAGAGTCAGACAGCACAGAGCTAGAAGGGGAGGAGTCAGACGTCTGGTGGGGCGGAGCTGAGACCGAATACTCTGATAACAGCATGTCGCGCCCGGGAGACACCGAGCCAGTCACCGCTGAGGATGAAGAGGCGGAGACTTTTGAAAGGGATGATAACGGAGATGGCGAGGAAGATGTAGGCgacgatgaggaggaggaggaggaggaggaggaggaggaggaggacgacgGGGAAGACAACGACGTGACCAATGAACGAGATAGCGATGAGCACAACGCTAACGTTGCCatgaccaccaccaccaccaccaccaccgaaTCAGTTGAGGAAGTCGTTCGAGCCGTTTGTTGGGCTCGTGCTGAGTCAGGCCCATGTCATGCCATGCTGGAGCGCTGGTACTTCGTGCCTGAGAAGGGCCGCTGTGTTCCCTTCTTGTTTGGGGGCTGTGGGGGCAACAGGAATAACTTTGGCTCGGAGGAGTACTGCCTAGCTGTCTGCAGCAGCTCGTTGCCCACCATGGCCCCTAGTCCTCCAGACGCCGTGGATCAGTACCTCGAATCTCCCGGGGACGACCACGAACACTCTGACTTCCAGAAGGCCAAGGAAAGCCTGGAGGCCAAACACCGGGAAAAGATGTCCCagGTGATGAGGGAGTGGGAAGAGGCAGAGAGGCAGACCAAGAACCTTCCTCGTGCTGACAAGAAGGCTGTCATCCAGCACTTCCAGGAGAAGGTGGAGGCTCTGGAGTGGGAGGCAGCAGGAGAGAGGCAGCAACTGGTGGAAACCCACATGGCCCGAGTGGAAGCTCTGCTCAACAGCCGCCGACGCCTGGCTCTCGAAAATTACCTTAGTTCCCTACAGGCCAACCctccacagGCTCGTCAGGTGTTGAGCCTGCTGAAGAAGTACGTCCGTGCAGAGCAGAAGGACAGGCAGCACACGCTGAAACATTACGAGCATGTCCGCACGGTCGATCCCAAAAAGGCTGCACAGATCCGACCTCAGGTTTTGACCCACCTACGTGTGATCGACGAGAGGATGAATCAGTCTGTCGGTCTGCTCTACAAAGTGCCCAGTGTGGCGAATGAGATCCAAAACCAAGTCTCTGTGATAATGCAGAGAGTTCAGTCTGAGCTGTCTCAGCAAGTCTCTTCCCTGCAGAGCGATGGGCGGATGGACGGCAGGGTGAGTTACGGTAACGACGCTCTGATGCCTGATCAGGCCTACAGCTCTGCTCCTATGGACGCTGGCCTGGACGGACTGGGCATCCATCCTGAGAGCTTCAACCAGGCCAACACAGAGAACcacgTTGAGCCTGTTGATGCTCGTCCAATTCCAGACAGAGGACTCACCACGCGACCTGTATCTGCCCTGAAGCCAGAGGAGATGCCCAAAGTGCGGACGGAGACTGAAGAGGGGCAAAGTGCTGGTTATGAAGTTTACCATCAAAAACTGgTGTTTTTCGCTGAGGATGTGGGGTCCAATAAAGGTGCCATTATTGGACTTATGGTTGGAGGGGTTGTCATAGCAACTGTCATCGTCATTACCTTAGTGATGCTGAGGAAGAAACAATATACTTCCATTCATCATGGTGTAATCGAGGTGGATGCAGCCGTGACACCAGAGGAGCGTCATCTGGCCAAGATGCAGCAGAACGGTTACGAGAATCCCACCTACAAATTTTTCGAGCAGATGCAGAACTAAAGAACGGCTCGACATTTTCTCCAGACGTACCCCGACACTCTCACTCGTAGGGTCTGTTCCATTCTGGTCCCTTGCCCTCAGCCCCTAACACCCTCACTTTCTCGCCCTGTTAAAGGAGGAGTACTGCAAAGGCTGATTTTTAACTTGTTTTTGaaggttaggaaaagatcagTGAAATCTTTGTATCAGTTAATGTTTCAGTCAGGGGTTTGGGCCAAAGGAAAATGACATGGAACAAAGCCTTCTTAATCCCTCGATTGTAAAGAGCCACTTGAGCTCACATTTGCCTGCCATTGATCAGACAAGGGTACCCTGTTTCACCTGCACTTTTCAGCCAATCACAACAAAAACGTCAGTGTTTTTACAGAAAAACCCTGTTGATGATTTATATCAAGTCTCTGAGACCAGAAACGTGTAAATCCAAGCAGTTTAATTCCCAGTCTCTCCCTCATCGCCCCAACTGCTCCACTCACCCCCCCTCTCCGATGACAGATGTGCTGTGTTTGATGACATAACAGCTCTTAGAGCTGGCGATGGCAGGAGGGGCTCTCAGAGCACCTCCTCGCACAATTAAAGCCCAACTGTTTCaggtttgtttttcaaaaaaggagaaaaaaactcagaaaaaTGATATGTAATCAACATATGTAAAAGTTGAAGATtattgaatgttttgttttctgattatttttttttgattttttttttttttatgtgtaataTATTAAGACTGAGATTAGCTGTAAGTATATGTAGTGCATGGCAATGTTGATGACAAAtagagtatactgtatgttgaggTCCTCGGGAGCGGTCCTCTTACTAGATATTTTAGCAGGATTGTACATTTCTAGTGTCTTCTTTGTGATCTTGTgatatgaagaagaaaaaaaacaaaaaaaaacaaaagagtaTTCAGAACCCAGTCTGCTTTGTCACACAGACTTGCTTTAACTGAATCTTGGCTCATTACGCTCATCTCCATGCTTCACTGTTGTGTTAGCTGCATGGGCAAAATGCTCTATATGTACAGTAATATATGAAGTGTAATAGTATCCGAAAGGAAGAAAATTTTGTTACTGTTTGCGTTCTATGCACTCTGTCATATTGGAAGTCTGATTGTTATCACCAAATATTATTGCTGTTAAGCCCCTAATGCCAATTCACCCTGGTCAAACTTTAGAAAGGATGTTTTCTGAAAGTGTATCATTCCAGATTTatcattcccctctctctttttgactgtaaatatatatttggaaGATCAAAATCTGACTCTCTTGCCCAGTTTCATTATCAATCTCCACTTCTCAATTTTTTCCCCCTTGTTCATGTGTTCATCCGTCTTTCCATCTTAGCCTCATTTGTCCCGTTTACCCTCTTTTTGGCCATGTCAGCAATATTGTACAGCACagcttttttgatttttttttttttttttttatgacggGACTTGTTTGGCCCACAAAGATCAAATGTTTTCTCCTCTTCACACACATTCCTTCACAAGATCTCACATGCACATTCTATTTTTCTACATTTCCTGTCTATACATGTGCAGTGCTTCTGTTTGTCCTGTGGCAGATATTTCTTTGCCATATCTGTTTTCAAGACTTAACGGTCCTCGTGAGGATGACCACAACTCCCATCAGCATAGACACATTTCCCTCTCCCTTAACAGAGTTATTAATGCCACCTCCAGTAAACATGAATGTGACATGCATATTGTGCTTTTATACCATAGAAATACAACACATATCACCTCTCTACACATTATGTCCATGTGTGTAGTGTACAGACACACTAATTGAAGCTCTTAATCAGGTCAATGTTTAAAGTTTGTATTGATGCTCACTCTGGGTGGCTTTGGagtcttgtgttaaaaaaaaaaaagatgcttttTTCCTTTCATTGATTCAGTGACCCTCTGTGTAGTTACATGAACCATTTGCTTGGAGTAAGAAAAAGCTTTCTACACTCGGTATACCATGAATAAAATTTTGAATGTA

Function

NR:

description
PREDICTED: amyloid beta A4 protein-like isoform X1

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K04520 APP; amyloid beta A4 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817757.1 True 4449 mRNA 0.48 19 20649268 20664884

Neighbor

gene id symbol gene type direction distance location
u2af1 LOC103352857,LOC103391595 coding downstream 12663 20630090 ~ 20636605 (-)
cbsb NA coding downstream 37607 20589788 ~ 20611661 (-)
ankrd10b ankrd10,LOC102292027 coding downstream 134065 20499453 ~ 20515203 (-)
ube2al ube2al,ube2a,LOC105934920,LOC104955100,LOC103021436,LOC103029486,LOC108259060,LOC107552373 coding downstream 150397 20492166 ~ 20498871 (-)
rab20 rab20 coding downstream 172919 20471607 ~ 20476349 (-)
LOC120569295 grpr,LOC103352898,LOC100697445,LOC101071331,LOC101471274,LOC102795360 coding upstream 50702 20715586 ~ 20719763 (-)
srpx srpx,LOC102777533 coding upstream 110194 20775078 ~ 20792247 (-)
rpgra NA coding upstream 130833 20795717 ~ 20809233 (-)
dcaf6 NA coding upstream 159890 20824774 ~ 20850992 (-)
rpl24 rpl24 coding upstream 196330 20861214 ~ 20865558 (-)
G125658 NA non-coding downstream 64336 20584648 ~ 20584932 (-)
G125605 NA non-coding downstream 318553 20330508 ~ 20330715 (-)
G125551 NA non-coding downstream 417208 20230085 ~ 20232060 (-)
G125543 NA non-coding downstream 500089 20147416 ~ 20149179 (-)
G125539 NA non-coding downstream 504519 20143583 ~ 20144749 (-)
G125694 NA non-coding upstream 2162 20667046 ~ 20667405 (-)
G125701 NA non-coding upstream 19011 20683895 ~ 20684410 (-)
G125703 NA non-coding upstream 21812 20686696 ~ 20686913 (-)
G125708 NA non-coding upstream 27013 20691897 ~ 20697240 (-)
G125720 NA non-coding upstream 45981 20710865 ~ 20713149 (-)
G125620 col4a2 other downstream 182083 20464109 ~ 20467185 (-)
G125619 col4a2 other downstream 187639 20459162 ~ 20461629 (-)
si:ch211-214p13.7 NA other downstream 725533 19921268 ~ 19923735 (-)
LOC120570223 NA other downstream 853048 19790052 ~ 19796220 (-)
si:ch211-214p13.3 NA other downstream 880682 19751701 ~ 19768586 (-)
LOC120570047 dynlt3 other upstream 69666 20734550 ~ 20738320 (-)
G125842 NA other upstream 288777 20953661 ~ 20960064 (-)
LOC120569741 LOC104951940,LOC103391685,LOC103352881 other upstream 314117 20979001 ~ 20986633 (-)
tmtops2b LOC100693281,LOC102294429,LOC102792754,LOC101463828,LOC102207603,LOC103352886 other upstream 446303 21111187 ~ 21149005 (-)
ecrg4a Augurin-B,LOC103352889 other upstream 528024 21192908 ~ 21198088 (-)

Expression


Co-expression Network