prkra (prkra)


Basic Information

Item Value
gene id prkra
gene name prkra
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18156732 ~ 18163749 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817769.1
TTAAATTCAGTATTTGCGCTCCCCGGTCAGCTTTACAATGAAGAACTGTTAGCATTCTCAGGCCAATTTATATTCTTAATAATAAAACTAGATCCCCAGACAAAACATCTCAAAGGGGtgtctgccatttttttttccagttaacGTTACCCGCAAAAGAGTCTTTAATCAGCCCGCAAACAAAACGACAGGAAACTGTAACGGTTAACATGTCTCAAGAAGGATATCGGTCACCAGCATTGAAAGCAGACACGAGCTTGAATATACATGAATCGCAGAGGACCAACCCCGGGAAGACACCTATACAAATCCTACATGAATATGGCACCAAAAGTGGCAACCTCCCTGTGTATGTGATGGAGAAGGCTGAAGGAGAGGCTCACCAACCCAGCTTCGTCTTCAGCGTGAAAATTGGAGATGTTAGCTGCGCAGGTCAAGGTCCTAGTAAAAAGGCAGCTAAACACCAGGCTGCAGAGGCTGCCCTGAATATTCTACAGATAGATGCTGGGGCAGTGAACGTTACTGTGAAATCTGAGAGTAACGGTGTTGTAGCAGAAACAAACAACCATCCCAACTCAGTGGGGATACTGCAGGAATTAGCATTACAGAGAGGATGGCGTCTTCCTGAATACACAGTTTTAATGGAGGCTGGTCCACCACACAAGAGAGAATTCACTGTTACTTGTCGAATGGAGTCGCTGTCAGAGAAGGGTGTAGGAAATTCAAAAAAGGGAGCAAAAATGGCAGCTGCAGAGAAAATGGTGTCAAAGCTTCAAAGTCTGTCAGGCTGTTCTGAAATCACATGGACTCCAAAACCAAGCGTCCGGTTTGAGAACTTAAGGAACTCATCAGCAGAGAGTATATGTTTACTGAGAAGAAACCCGCTGAGCATTCCCAACACCGATTATATTCAGATGATGTTGGAGCTGTCCAAGGAGCAGGGCTTTGAGGTCACATACTTCAACATTGATGAGCTGACGGTGAACGGCCAGTACCAGTGCCTGGCAGAGCTGTCCACCTCCCCGGTCACCGTTTGCCACGGCACCGGCATCTCCTGTAGCAACGCTCACAACGACGCAGCACACAGCGCCCTCCAGTACATCAAGATCATGGCCTCCACCAAGTAAAACCACCGCAGTCATCTGCTTCACCTGTCTTGTCACATATTTCAGCTGATGTCCAGTCATGATGAGGCTGTAGATCGTTCTTCCCACTAGTCTTCCTGTCTGTGGACGATATGAGGTCCAGGTATATATTTATAACTATGTGGATCGTGATCTTTGTGATACacataattataaatatatacctTGACCTCATATCGTCCACAGACGGGAAGAACTCAACATTAAGTAACTTGAATCAGGCAATTTAAGAGCGGCATTTGTGAAGAGACACTTTCATATTTTACTTGAGATGTCCAACATACTGTATTGACACAAATGTACATGTGTAAATTAAGTACGTAATAGTGAAAAATATGAAGCACATTATTTGTGTTGCTTTAGTGGGATTTTTATTGCCTGTTTGTAGTCAGATCTTTTTAGGTTGCattggtcttttatttattcttttttttattccacagtTTTTCCCCCTGTAGCAATGCGCTGTATTGAGCCAATAGAGTATCTTAAACTTTTAATTTGCTTCAGAGATACCTGCTTTTCTGTTAAACTCTAAAATGAAAGTGAATTGAACAAGGGAGATTATTTGACTTGGGTTATATTTGAAAGGATGGTCTGCATTTTGATCTACAgaattaaattattttctttcctACTTCCACTCGTCCATCGGTCAGTATGCAATCTACAGTACGACCCCTGCGGTTTGTATCTGGTTGACTCTCAAAATAGATATAACATGTTACTTCATATTCCCATCCTGCTGGTctcttgccttttttttttttttttttttttttgcagtgttcCTCATATTACCTTGTGACATatttaatatacattaactTAATGCTGTCCTCTGCAGCAACATGTGTATGAATCCAGAAAATAAACCCAAACCCAAACACTAAA
>XR_005640956.1
TTAAATTCAGTATTTGCGCTCCCCGGTCAGCTTTACAATGAAGAACTGTTAGCATTCTCAGGCCAATTTATATTCTTAATAATAAAACTAGATCCCCAGACAAAACATCTCAAAGGGGtgtctgccatttttttttccagttaacGTTACCCGCAAAAGAGTCTTTAATCAGCCCGCAAACAAAACGACAGGAAACTGTAACGGTTAACATGTCTCAAGAAGGATATCGGTCACCAGCATTGAAAGCAGACACGAGCTTGAATATACATGAATCGCAGAGGACCAACCCCGGGAAGACACCTATACAAATCCTACATGAATATGGCACCAAAAGTGGCAACCTCCCTGTGTATGTGATGGAGAAGGCTGAAGGAGAGGCTCACCAACCCAGCTTCGTCTTCAGCGTGAAAATTGGAGATGTTAGCTGCGCAGGTCAAGGTCCTAGTAAAAAGGCAGCTAAACACCAGGCTGCAGAGGCTGCCCTGAATATTCTACAGATAGATGCTGGGGCAGTGAACGTTACTGTGAAATCTGAGAGTAACGGTGTTGTAGCAGAAACAAACAACCATCCCAACTCAGTGGGGATACTGCAGGAATTAGCATTACAGAGAGGATGGCGTCTTCCTGAATACACAGTTTTAATGGAGGCTGGTCCACCACACAAGAGAGAATTCACTGTTACTTGTCGAATGGAGTCGCTGTCAGAGAAGGGTGTAGGAAATTCAAAAAAGGGAGCAAAAATGGCAGCTGCAGAGAAAATGGTGTCAAAGCTTCAAAGTCTGTCAGGCTGTTCTGAAATCACATGGACTCCAAAACCAAGCGTCCGGTTTGAGAACTTAAGGAACTCATCAGCAGAGAGTATATGTTTACTGAGAAGAAACCCGCTGAGCATTCCCAACACCGATTATATTCAGATGATGTTGGAGCTGTCCAAGGAGCAGGGCTTTGAGGTCACATACTTCAACATTGATGAGCTGACGGTGAACGGCCAGTACCAGTGCCTGGCAGAGCTGTCCACCTCCCCGGTCACCGTTTGCCACGGCACCGGCATCTCCTGTAGCAACGCTCACAACGACGCAGCACACAGCGCCCTCCAGTACATCAAGATCATGGCCTCCACCAAGTAAAACCACCGCAGTCATCTGCTTCACCTGTCTTGTCACATATTTCAGCTGATGTCCAGTCATGATGAGGCTGTAGATCGTTCTTCCCACAGACGGGAAGAACTCAACATTAAGTAACTTGAATCAGGCAATTTAAGAGCGGCATTTGTGAAGAGACACTTTCATATTTTACTTGAGATGTCCAACATACTGTATTGACACAAATGTACATGTGTAAATTAAGTACGTAATAGTGAAAAATATGAAGCACATTATTTGTGTTGCTTTAGTGGGATTTTTATTGCCTGTTTGTAGTCAGATCTTTTTAGGTTGCattggtcttttatttattcttttttttattccacagtTTTTCCCCCTGTAGCAATGCGCTGTATTGAGCCAATAGAGTATCTTAAACTTTTAATTTGCTTCAGAGATACCTGCTTTTCTGTTAAACTCTAAAATGAAAGTGAATTGAACAAGGGAGATTATTTGACTTGGGTTATATTTGAAAGGATGGTCTGCATTTTGATCTACAgaattaaattattttctttcctACTTCCACTCGTCCATCGGTCAGTATGCAATCTACAGTACGACCCCTGCGGTTTGTATCTGGTTGACTCTCAAAATAGATATAACATGTTACTTCATATTCCCATCCTGCTGGTctcttgccttttttttttttttttttttttttgcagtgttcCTCATATTACCTTGTGACATatttaatatacattaactTAATGCTGTCCTCTGCAGCAACATGTGTATGAATCCAGAAAATAAACCCAAACCCAAACACTAAA

Function

symbol description
prkra Predicted to enable double-stranded RNA binding activity; enzyme activator activity; and kinase activity. Predicted to be involved in production of siRNA involved in RNA interference. Predicted to act upstream of or within gene silencing by RNA and phosphorylation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in dystonia 16. Orthologous to human PRKRA (protein activator of interferon induced protein kinase EIF2AK2).

NR:

description
interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog

GO: NA

KEGG:

id description
K24540 PRKRA; interferon-inducible double-stranded RNA-dependent protein kinase activator A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817769.1 True 2039 mRNA 0.42 8 18156732 18163749
XR_005640956.1 False 1924 transcript 0.42 9 18156732 18163749

Neighbor

gene id symbol gene type direction distance location
pde11a pde11a,LOC102790363 coding downstream 44390 18066018 ~ 18112342 (-)
nfe2l2a NA coding downstream 131524 18018079 ~ 18025208 (-)
evx2 evx2 coding downstream 299680 17852869 ~ 17857052 (-)
lnpa lnpk,LOC102313025 coding downstream 320646 17827078 ~ 17836086 (-)
atp5mc3a atp5g3 coding downstream 424140 17730065 ~ 17732592 (-)
casp10 NA coding upstream 434 18164183 ~ 18171021 (-)
LOC120569736 LOC104967666 coding upstream 8181 18171930 ~ 18174973 (-)
LOC120569835 adam23 coding upstream 16680 18180429 ~ 18225611 (-)
stk24a LOC101063939 coding upstream 70292 18234041 ~ 18249561 (-)
slc15a1a LOC104947517,LOC108239716,LOC100691459 coding upstream 87112 18250861 ~ 18261685 (-)
G125000 NA non-coding downstream 64202 18092327 ~ 18092530 (-)
G124872 NA non-coding downstream 133255 18022409 ~ 18023477 (-)
LOC120569506 NA non-coding downstream 334245 17737284 ~ 17822487 (-)
G124691 NA non-coding downstream 805986 17347911 ~ 17350746 (-)
G124695 NA non-coding downstream 862092 17291927 ~ 17294640 (-)
LOC120569840 NA non-coding upstream 44989 18208738 ~ 18211956 (-)
LOC120570508 NA non-coding upstream 652097 18815846 ~ 18819321 (-)
G125108 NA non-coding upstream 663793 18827542 ~ 18828502 (-)
G125112 NA non-coding upstream 680351 18844100 ~ 18844338 (-)
G125113 NA non-coding upstream 680797 18844546 ~ 18845295 (-)
LOC120569287 LOC103391581,LOC104924425,LOC103375901 other downstream 41635 18113110 ~ 18115097 (-)
fastkd1 fastkd1,LOC102780871 other downstream 1114360 17035373 ~ 17042372 (-)
LOC120570068 LOC103362129,LOC101485094 other downstream 1766838 16381250 ~ 16389894 (-)
gcgb gcg other downstream 1775967 16378488 ~ 16380765 (-)
LOC120570587 LOC100705152,LOC102292123,LOC101476258 other downstream 1933996 16207690 ~ 16222736 (-)
G125089 dct,LOC102781940 other upstream 531731 18695480 ~ 18699802 (-)
G125090 NA other upstream 537138 18700887 ~ 18704677 (-)
tbl1x LOC103352926,LOC104925011,LOC102307724 other upstream 1068238 19231987 ~ 19258846 (-)
G125326 dopey2 other upstream 1432180 19595929 ~ 19597521 (-)
si:ch211-214p13.3 NA other upstream 1587952 19751701 ~ 19768586 (-)

Expression


Co-expression Network