ttf2 (ttf2,LOC105900813,LOC105419959)


Basic Information

Item Value
gene id ttf2
gene name ttf2,LOC105900813,LOC105419959
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26396070 ~ 26410761 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817854.1
GTCGATACGAAAATACTTTCATGCTCAGGGAAGCAACTGAAACTgaaccatactgtctatgaactgaactgaatGTGTCAGGACAATGGAGAAGATTTTATGTAATGTTCACGGCAGCGTGTGTATGTTAAAAACGGGCGTTAAAGATGGACCAAATAAAGGCAAAAGCTTTTACGTCTGCATTGACAAGCAAGGCTGCGATTTCACTCACGTGGCCAGCATCTCACCATCCCACTGCCTCCAACATGAAGATTCGATGGTGGAGCTCCAAGCTCTCACCTACAGTCTACAACAGCAGAGCCACAGGTTGTTCTACAGGTGTGTTGTGGGCAAAAAAGCAGGCCAAAGATGGTGTGGAACCGTGCCTTGGACTGCAccagagaaagaaaagagaaacccTCTATCTGACACAAAGCTACAGCCCTCTTGCCTGCCGCCTGTCCAAAACCCCTTTAAAGTCTCCAGCAAGACGGACAAGGACTCTGAGTGGAGAAGGATGCAGAGTGGTGGAGGTGATGAGAAAAGAACAGAGTTCAAAGACAGCGAGGCAAGTCACAAGGCTGAATCAAGAGAGGGCTGTCAGAAAGAAAATGTGGAGAGCGTAGATGCAGGAGTGGAAGAAGAGGAGGCAGGGAAGCTAAATTCAGCGGAGTCTTACAGAGGTAAACAACTTCCACCAGGGATGAAGTTAAAGAAGAGAGTTTCAGATGAGGAGAGAAACGGTATCAAAGCTAACATTGTGGAAAAAATAACTGATACGGCGCAAGACAAGACTAAAGACAACcagaaagcagaaaaaaagatttctaACTCCAGTGTCAAGGCTATTCACCCAGAGAAAATAAATTGGACCTCACAGAATTCTCACAAGGACTCGCCCCACCAACCAACTAATGGTAAAACCTGTCTGGTGGAACAAACTGACCCTACTGTAGAAAAGAGTATCTCTAAATCTGAATCCGCTTCCAGAGGCTCTGATACCACCAGGAACCTTGCATTTAGCAAACCAACACAATCAGAGTCCAGTCAAACCAAAATCCACCAagatgctgatgatgatgatgatgtagtGGTGGTGTCAGTGAAACCTGCTACTCAGAAAACTCCTCCTGTTACTGCTGTTCAAAAGACACTGACCAACTTTGCTGGATTCCAGCCAAGTTCTAAGATGAAAGTTCAGCAGGAAGTTCCCAAAGGGCTGCACAGCCTGCTCACTGCTCAACTCCAACAGAAAAAGGCGACTCTGTCTGTGGTGAATGTGGCAGCTCTGCCAGATAAAGGGGAGAGGTTGAGGACTCAGGTGAAAGAGTTGGAGGACGCGCTGGAGTCTCTGAGCCTCACTGCTGCTTCTCAGCCTGAGTCCCAGGGTGAACGTGACCGCGGTGATGCTAGTCTGGGTAGCAGCCAGGTTAACCCGTTCAGCCGGCAGGGCGGCACCATCCTGCTCCCTGCCCTGCCAGCCCCCGGCCCCTCCCAACACCAGGCCTCCGGCAGCTCCCTGGGGCTTCAGCTGAGCCAGGGATACACTCCGATGTATGGAGCAAACCCACAGGTGGCAGGTGGCCTTTATGGTGGCAGGATGACTCACGACCGTTTGCTGGCGGTGAAAAATGCCACCTGCGAGGCCATTGACCATCTCCACAAATCCCTGGAGTCCTGCCCCGACGCTGAGTCCGAGGTTCCAGACCCAAAGGGCATCAAGGTGTCGCTCCTGGCCCATCAGAGGAGAGCTTTGGCCTGGCTGCTCTGGAGAGAAACCCAGAATCCCTGTGGAGGAATTCTGGCGGATGACATGGGTCTGGGGAAAACCCTGACCATGATTGCTCTCATACTGGCCAAGAAGATCAAAGCAAAAGAGGAAGCtgagaagaaggaagagaagaagcCAGAGAGCTGGGTCTCCAAAACTGATTCCAGCCTCGTGGTTTCTAAGGGCACTCTGATCATCTGTCCGGCCTCACTGGTCCACCACTGGAAGAGGGAGATTGACAGACATGTCAAGACAGGCAAGCTGACTGTGTACCTGTACCACGGCCCCAACCGCGAGAAAAGTGCCAAACTGCTGGCAGATTATGATGTGGTGGTGACCACATACAGTTTGGTCTCTAAGGAGATCCCAGTCCAGAAGGAGGACGCTGAGAAACCCAGCAAAGATGCTGATTATGTGTCTTTACGCTCAGCTCCTCTTCTGCGAGTGACCTGGGCCCGGGTGGTTCTGGACGAAGCCCACAACATCAAAAACCCAAAAGTGCAGACCTCCATGGCTGTCTGTCAGCTGAGGGCTCGTGCCCGCTGGGCTGTGACTGGTACCCCCATCCAGAACAACCTGCTGGACATGTACTCACTGCTCAAGTTTCTGCGTTGTTCTCCGTTTGATGAGTACAAACTGTGGAAAGCTCAGGTGGACAACGGTTCTAACCGAGGCAGAGAGAGACTCAACATCCTGACGAGGACTCTGCTGCTCCGACGAACCAAAGACCAGAAGGACTCCACAGGGAAACCACTGGTGTCTCTTCCGGATCGGACCTGCGAGGTGCATCAACTCAAACTGTCCCAGGACGAACAGGCTGTGTATGATGTGGTCTTTGCCCAATCAAGATCTACTCTGCAGAACTACCTGAAGAGACATGAAGGAAATGATGTGAAAAAGGGAAATGCTTCCAGTTCCAATCCCTTTGACAAAGTGGCCCAAGAGTTTGGTTTGTCCCAGGCTGACCCTGCCGTGTCGAGTTCCCAGCAGCCCCAACAGGCGTCCAGCACCGTCCACATCCTGTCCCTGCTGCTGCGCCTCCGACAGTGCTGCTGTCACCTGTCGCTTCTTAAGAAGACTCTTGACACGTCGGAGCTGCAGGGTGATGGCATCGTCTTGTCTCTGGAGGAGCAGCTCAATGCTCTGTCACTCACCTCCAGCCCCTCTGCATCGGGCACTCCCACCAACGACACCGTGGCCCTTAATGGCACACGCTTCTCCTCACAGCTCTTTGAGGACACCAGTGAGAGCACCAAGATCGCTGCTATTGTCTCTGAGCTGAAGGCAATCAGAAAGAAGAGTAGTGATCAGAAAAGCGTGATCGTGTCCCAGTGGACCAGCATGCTCAAAATCGTAGCAGTTCATCTGCGGAGGATGGGCCTGAGTCACGCTGTTATCGACGGGACTGTCAACCCCAAACGCCGCATGGACCTGGTGGAAGAATTTAACACTAACCCTGACGGACCACAGGTGATGCTGGTGTCTCTTTGTGCTGGAGGGGTTGGACTCAATCTCATCGGGGGCAATCACCTCTTTCTTATTGACATGCACTGGAACCCAGCCTTGGAGGATCAGGCCTGTGACCGAATCTACCGAGTTGGACAAAGTAAAGATGTCACCATCCACAGGTTTGTGTGTGATGGCACAGTGGAGGACAAGATCTCCACACTGCAGGCGAAGAAGAAAGAGCTGGCCCAGAATGTGCTGTCTGGAACGGGAAGCACCTTCTCCAAGCTCTCCTTGGCTGATCTCAGAATCATTTTTGGTGTCTGAGATGGGAAAGAACGGAGGACACCATGCCACACTTTCAACATCATAGCTACACCACCAGACAACTgttcatacatacagtatatttaaagtTTAGGACATAAGTCTGAAAAATCTTGAAATAACCTAATAAGACCTGCATCCTCTCTTAGCTTAATCCATAAGTGTTTAAGCTGCATCCTAACTGCTTTACAAGTTGTTATTAGACTTAATTTGCctcaacattttatttcaaggTTTCCTTTTCCTTAACTGTTAGTCCCTAATTTCAGAACTGCTATTGACTTCTCCGTACTCGTAACGTCTTCTTACATGCTGCTTTAATGGATTTATTATAACAGTATTTCAGTTGGTATTGAATAGATGCTGCTTTTGCCCTGATTTGTTGCATCAATGCAAAACTAGATACTTGATGACCATCACTTTctcttattttattcattttaagagGCACATGAAGCTgtagaagagaagaggaagtcTTGAGTatcttaattatttttttcttttgctgtttATCAGTTGGGGAAGCCACTTTGTCCTACAGCCACTGCTGTGGAGGTAACACTAAACCGCAGATTAGAGCTTTCGATTGAACATTTTAAGATTAATCAACCGAGTAAGTTTCCTGAGATCACAGCTACAACTGCAGATACTgtaacatacaagttaaaaaCAAATTCCTCAACTTGAAACATGTTTATACAACTGATATCATCATGCAACTGCTGTATACACAGCTACAAATGTATGTATTGCCGGCCTGAGTGCAAAAGCCATAGCTGACATACAGGTGAGGAACTCTTGTACTTCTGGTCTTTTGGTCCAGTATGATGCTTTACAggactttttttgtttatggCATATGCTACAGTAGGTGTGGCAAAAAATTAAGTCATATTTTTAGATGTATATGTTTCAAAGttattttataatgtttattcaCAGGGACAAAGGTATTTTAAATTCTAGTTGCCGACTCATTGTAGTGAAGCAACTACTTCTATTTGTGTCACctgttggattttatttctgctaaagctgttttcaaatggctttttttaagtattgtgtattgttgtaTGTTTGTTATGTTAAATGCAGGTGCTTTGAATTATGTAAGATAAAGTGACTGCTCACTGAATAAAGTCCTTTGCATAGTTAACTGAAATTATTAATCAATGAACATATATTGCTCATACTGTACTTTTTAAGATATGTTAGAGatgttttaaaatgtgcatTTCTTGATATTAGATGATATGAAGATGG

Function

symbol description
ttf2 Predicted to enable ATP binding activity; hydrolase activity; and zinc ion binding activity. Orthologous to human TTF2 (transcription termination factor 2).

NR:

description
transcription termination factor 2 isoform X3

GO: NA

KEGG:

id description
K15173 TTF2; transcription termination factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817854.1 True 4792 mRNA 0.47 23 26396070 26410761

Neighbor

gene id symbol gene type direction distance location
rnf17 NA coding upstream 22166 26314786 ~ 26373904 (+)
LOC120569747 NA coding upstream 268959 26099440 ~ 26127111 (+)
LOC120570670 NA coding upstream 300073 26086729 ~ 26095997 (+)
il1rl1 NA coding upstream 321731 26027828 ~ 26074339 (+)
LOC120569283 NA coding upstream 380255 25995584 ~ 26015815 (+)
ift88 ift88 coding downstream 125192 26535953 ~ 26560881 (+)
il17d il17d coding downstream 150261 26561022 ~ 26565252 (+)
popdc2 popdc2 coding downstream 307744 26718505 ~ 26731164 (+)
wars2 wars2,LOC102792775 coding downstream 421232 26831993 ~ 26860003 (+)
tbx15 tbx15 coding downstream 456434 26867195 ~ 26907517 (+)
G127209 NA non-coding upstream 39161 26352887 ~ 26356909 (+)
G127204 NA non-coding upstream 103281 26292443 ~ 26292789 (+)
G127203 NA non-coding upstream 127969 26267885 ~ 26268101 (+)
G127095 NA non-coding upstream 297529 26098273 ~ 26098541 (+)
LOC120570231 NA non-coding upstream 311565 26081889 ~ 26084505 (+)
G127264 NA non-coding downstream 30635 26441396 ~ 26442298 (+)
G127273 NA non-coding downstream 92798 26503559 ~ 26505543 (+)
G127270 NA non-coding downstream 99414 26510175 ~ 26518288 (+)
G127332 lats2 non-coding downstream 225470 26636231 ~ 26640460 (+)
G127333 LOC107712271,LOC107597418,LOC107724484,LOC107569193,LOC107658249 non-coding downstream 231554 26642315 ~ 26642650 (+)
G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 other upstream 266191 26116988 ~ 26129879 (+)
cacnb4a cacnb4 other upstream 731643 25630107 ~ 25664427 (+)
fzd5 LOC104950716,LOC108238837 other upstream 2001085 24372471 ~ 24394985 (+)
sestd1 sestd1 other upstream 2097852 24277157 ~ 24298218 (+)
cwc22 cwc22 other upstream 2196235 24183949 ~ 24199835 (+)
mphosph8 mphosph8 other downstream 716 26411477 ~ 26439285 (+)
zmym2 zmym2 other downstream 38682 26449443 ~ 26484088 (+)
LOC120569906 NA other downstream 302589 26713350 ~ 26717397 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other downstream 1977882 28388643 ~ 28409839 (+)
G127814 itgb5 other downstream 2618141 29028902 ~ 29041224 (+)

Expression


Co-expression Network