tlr7 (tlr7,LOC102778011)


Basic Information

Item Value
gene id tlr7
gene name tlr7,LOC102778011
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19077189 ~ 19082770 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817867.1
gtttaccatgttaacCATCTTAGCTAattagcacaaaacacaaagtacagatgAGGCTGATGGAAATACCATACGTTTTGCAGCTATTTGGTcctaaaccaaagtattggacaaatttaAATGTTGATCTGATGATGAGGCTTGATGAAAAGTTAGACGATTGCCAAATTATAATTCATTATACCGGGACCCCAAATGCCTGTACACATTTTCAGTGCAATCCATAGCTGTTTAAAAGGTCCAGTCTGgacaaagtggtggaccgataGACAGAGCGACAATGCCATGCCCTGCTGCCAGCATGgctaaaaaaacactttgtcaTCATGCCTTTTTACTAAAAGAGGCTGATCAGGTGGATGCTTTTTCTAAAACTACAGCGTCTATTCCTGCATTGGGTTTCTCAAATAAAGGgccaaatatacacacatactgtctgGACAGATTACGCATTAGAGTGAATGTTACTCAGCTGGTAGATCTAGAGCCACAAAGTAGCAAAAGATTGAGGAAGAATATTCTTCCTGGTGCCAGAATAGCGTGTTTACCATGTAAGCTGGTAAACCTAAACCCAAGCATAGGTTTCACTTTCCCCTGCAggctaacaaaaaaagaaactgatCTTGGTAGTAGCCACTGAATAACCCACAGTTACTCCAGCTGTGCTGTTATACTGTACTATAAGAGCAAGCAACTATCATCCTTTGACCCCTCCATTCTAAAGGCAACCTCCTTGTAGTAATCTCAGCAGAAAGCACATATTTGTTACCATTATATAACAAACACGATCAGTCAACCATTATCAAACACACATAATAAAAGATGGAAGATTTGGATGTGTGCGGTTTATGACGATAGGGAAGTGATGCTGGCTAATTATACACACAATGGGCTAACCAAGCCACCTGTTACTTTCATGTCATCCCCTTAGAGCTGATCATCAATGTTACACTTCTTTCAGTACTCGATCTCAACAGAACTAATAGCAGGACCTCTTTTAAGTCTCTCATGTGAACAATGTTCTTCCATCTGATGTGTGTGGCACTGCTGGGCCTGTGGTGTTGTCTCACCACATCAACAGCTAGCGTTTCTTACCCCAAAACTCTGCCCTGTGAAGTTAGAGAGACCGACAACGGGAGTGTGGTGACGGTGGACTGCACTGAAAGAAGCCTCAAAGATATCCCCCTTGGCATCCCCAGAGACACTACCAATCTGACGCTCACCATCAACCATATTCCTAACTTAAACTCCACCTCCTTTCATGGTCTGGAGAATCTGACTGAGATTGACATGAGGTGCAACTGTGTGCCCATCAAAATTGGGCCCAAGGACCGCATGTGCACAAAGAGTGTGATCATAGAGGAAAACACCTTTTCCAGTCTGAGGAACCTGCGAGCACTGTATCTAGATGGCAATCAGCTCTACAGTATACCTAAAGGCCTCCCTCCAAACCTGATCCTGCTGAGTTTGGAAGTGAatcacattttttatatttcatcaGCAAACCTCTCTGAGATTAGAAATATTCAGATGCTTTACCTCAGTCAAAACTGTTATTTCCGTAACCCATGTAATGTTTCCTATGAAATAGAGGATGGCGCATTTTTACAGCTTAACAATTTAACATTGTTATGTCTTAAGTCAAATAACCTATCCTTTATTCCACATCGACTACCCACAAGTCTGAAGGAGTTGTACCTCTATAACAACAACATTCAAGAAGTCACTGATGAGGATTTCAAAAACTTAACTAACCTTGAGATTCTAGATATTAGCGGAAATTGTCCTCGATGTTACAACGCTCCTTTCCCATGCAACCCGTGCCCAAATAATTCCCCACTTAAAATCAGCAAGACGGCTTTTAAAATGTTGACAAAGCTAAAGACGCTGCGTCTGCACAGTAACTCTCTGACATGTGTGCCATCTGAGTGGTTTGCCAGCACAACAGAGCTAAGAGTTCTTGATCTCTCATCCAACTTTTTAGCAAGAGAGATAGGAGTCACACACTTTCCACATTTCCTGGGCAAACTGGAAGAACTGGACCTTTCATTTAACTATGAGCTTCAGAGGTACCCTGAAACACTGAGACTGAGCCACAATTTCTCATCCCTCAAATCCCTTCGAATTCTCAGACTGAAGGGCTTTGTGTTTCAGCAGTTAAAGCCAGAGAGCATTGCTCCATTAAAACCTCTAACAAACTTGGAGGTTGTGGATCTGGGTACAAACTTCATTAAAATGGCAAACCTTAGTATTCTGATGGAattaaaaagctttaaaataatCAGTCTGTCTGACAACAAAATATCATCCCCCTCTGACGGCCAAGAAGCTGTCGGTTTCTCTGGGGGAGAGCCCTTGTACTGGTCTCCCATGTCGCCTGCAGATCAGTACCAAAGTAAGGAAGTGAGAGAGATTCATTACTTCAGATATGATGAATATGCTCGCAGCTGCAAATACAAAGATAAAGAACTTGGAACGATTACATCCTTTGTCAACAAGAACTGCAGTCAGTTCGGCAAAACCTTGGATGTGAGCAGAAACAACATATTCTTCTTGCATTCAAGATTTCTAAATCTGGGAGAGCTTAGATGCCTGAATCTGTCTGGAAATGCAATGAGCCAAAGTCTGAATGGCTCTGAATTTAGCTATCTGGCTAATTTACAATATCTAGACTTCTCCTCAAACCGCCTGGACCTGCTCTACTCCACAGCATTTCAAGAGTTGAAAAGTCTGGTCATCTTGGATATAAGTTACAACAATCATTACTTTGAGTCAGAGGGCTTGACTCACATGCTTAATTTCACTAGAAATTTGAAAAATCTCAAGATATTGCTCATGAACCACAACCAGATATCCACTTCCACTAACACGGAGCTAGAGAGCGAATCTCTAGAGAGGTTAGAGTTCACAGGTAACCGGTTAGATATGTTGTGGAGGGACGGGGACATTAGGTATGTCAATTATTTCAAGAAATTACATAATCTGACTGTCCTCGACATCTCTCATAACAACCTTAATTTCATTCCACAGGAAGTGTTCAGTGGTTTGCCAGACAAACTGTCTGAGCTGTACATCAAAAATAACAAACTAAAGGATAACTCCTTTGATTGGGAGAAACTACAACTTTTAAGTTCTTTGCAAGTCTTAGATCTCAGTGGGAACAGCTTAACTACTGTTCCGCCCATGCTGTCAATCTGTACCAAATCTCTAAAGAAGCTCCTGTTACATAAAAACCAGATCCTAAAACTCACGCCAGATTTCCTCAAGGATGCCTACAACTTACAATATCTGGATCTTAGTTTtaatcacatacagtacattgacAAATCAAGCTTTCCAGATGACGTCATCAATAAGATGAAAATGCTGCTTCTGCACAAAAACAGATTTGTGTGCACTTGCAACGCCACTTGGTTTGTCACATGGCTCAACAGGACCACAGTGCCCATCCCCAGACTGGCCACGGATGTTACTTGTGCTAGCCCAGGGGCACAAAGAGGTCATCCTGTGCTCTCAGTGGACCTGCTGGCCTGCCAGCACAGCTACCTGTCAATCATCCTCTACACACTCATGACTTCCCTCGTCCTCAGCTTCCTCACCCTGTCAATCTCCAGCCATCTCTTCCTGTGGGACGTCTGGTACATCTACCACTTCTGCAGGGCAAAGCTCAAAGGTTATGGGCGCCTGAACTCCCAAAGCTCCACCTATGATGCCTTTGTGATATATGACAAGGAGGATCTGGCGGTAACAGAGTGGGTGATGAAGGAAATGGTTGCTCATCTGGAGGACCATGGAGACTGCCGGCTGACGCTTTGTCTGGAGGAACGGGACTGGATCCCTGGATGCCCCCTGATCGACAACCTCTCCCAGAGCATCCACAACAGCAAGAGGACCGTGTTCATTCTCACCAGCAAATATATCAAAAGTGGCAACTTCAAGACCGCTTTCTACATGGCCCACCAAAGACTAATGGATGAAAAAGATGACGTCATCGTACTGATCTTTTTGGAGAAAGTACCTTGCGATTCAAAGTACCTGAGATTAAGGAAGAGACTGTATAAGCGCTCTGTGATGGAGTGGCCTACAAACCCTCAAGCCCAGTTCTACTTCTGGTTCAGCCTGAGAAGTGTATTAGCAACTGAAAGTCACAAACAATACAACAATCTCTTCAAAGAGACATTGTAAAACAATATACTGTCATACTTAGTTCCTTCTTAATTAGAGATGGCACTGAATGTACATCTGTAAATGAATTACAATGTGTGAACATCCCACTATTTAAACATAAGACAAAGAGAAATGATTGTGACATGAATGACTAATTGTCTATTATGAATTCCCTTTTTACAGTAACTCAATAGGGAACTGGTTGGCACTCTTTGTCATCTACACAGATAATTATGATTTTGACTTTGTCTGAGATGGCAACAAAACTGTTTACATgtcatgaaaaaggaaatgaaacAGATGCACTTCTGCAATTGAGAGGCTACTTCTGCCCCAGAGCCTCTTTGTGAGAATCAGCCAGCtcgctgtgtttgtttgacttcAGCAACAgggggatttttttatttttttttatgtgtgttatATTTTATAGATTTTAAGTTGGATATATTAACTTTGGTGACTTGATGCAAGACAGTGTCATCAAGTAGTTAATTTTCAGTTTTACTTTAAAGATTGCCAGTGCCACTGTTTCTTGCAAGGTTGTCATTCAAGAATCATAAGGAATCAGTACCACAATGGTGAGTTTTATTGATACAAGTTTCTCCGTACGTTTTTTAAGCTTTACTCTATGAATAGCAGAGAATAGATTTACATACTGAAAGTAATATGAATGTTTTCCTCGTCCGACGTTTGTTATAGATTTACTGGTTACCTGTATGAACTTTTTAATTGGATGTTTCTGTAATATAACCTGTGAGGGTTTTCGTCTTCTGTGAGGAACTTTATGGCACTAGATAATATTTGGTGtatacatttacagtattttactaTGAAACTATTTGAAAACTGTTTGGCATTTTTTATAATTGAGTGTTCTACATTAAATAATttacattaaaatgtatttacaactgtgtgaaaaaaaaatatatcatctTCTTTCTATGAGTATAATATTTGAACAAGCAGCGGTCCGTCATTGGATTAGGAATTACAAACTCATGCTGTGCAGCCAAACCCACATAACGAACATAATATCATGTGTCAGGCCGACATCTTGTTAAATGTGTCtcaaataatttataataaataaaggGGAAACCAGATGCTAA

Function

symbol description
tlr7 Predicted to enable single-stranded RNA binding activity and transmembrane signaling receptor activity. Predicted to act upstream of or within defense response to other organism; inflammatory response; and toll-like receptor signaling pathway. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blood; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in COVID-19 and X-Linked immunodeficiency 74. Orthologous to human TLR7 (toll like receptor 7).

NR:

description
toll-like receptor 7

GO: NA

KEGG:

id description
K05404 TLR7; toll-like receptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817867.1 True 5282 mRNA 0.41 2 19077189 19082770

Neighbor

gene id symbol gene type direction distance location
frmpd4 frmpd4 coding upstream 406 19042151 ~ 19076783 (+)
LOC120570209 NA coding upstream 115015 18956693 ~ 18962174 (+)
LOC120570212 NA coding upstream 123508 18947919 ~ 18953681 (+)
cnmd LOC103352944,LOC102292237 coding upstream 141241 18931420 ~ 18935948 (+)
si:ch211-199f5.1 LOC104947498,LOC103352952,LOC100689962 coding upstream 145715 18927543 ~ 18931474 (+)
egfl6 egfl6 coding downstream 21416 19104186 ~ 19112692 (+)
rab9a rab9a,LOC104925019,LOC103392032 coding downstream 30635 19113405 ~ 19116298 (+)
ofd1 ofd1,LOC104947485,LOC104947524 coding downstream 35936 19118706 ~ 19128142 (+)
glra2 glra2,LOC102799111 coding downstream 91177 19173947 ~ 19186008 (+)
mospd2 mospd2 coding downstream 113198 19195968 ~ 19211831 (+)
G125115 NA non-coding upstream 222159 18852566 ~ 18855030 (+)
G125114 slitrk5,LOC100690770 non-coding upstream 225394 18845407 ~ 18851795 (+)
G125110 NA non-coding upstream 247281 18829619 ~ 18829908 (+)
G125109 NA non-coding upstream 247663 18828933 ~ 18829526 (+)
G125104 NA non-coding upstream 248276 18828686 ~ 18828913 (+)
G125266 NA non-coding downstream 384662 19467432 ~ 19468790 (+)
G125267 NA non-coding downstream 408768 19491538 ~ 19586655 (+)
G125274 NA non-coding downstream 468588 19551358 ~ 19551941 (+)
G125369 NA non-coding downstream 665296 19748066 ~ 19814268 (+)
LOC120570225 NA non-coding downstream 709239 19792009 ~ 19801958 (+)
LOC120570507 NA other upstream 249642 18818753 ~ 18827547 (+)
G125079 NA other upstream 372661 18703028 ~ 18704528 (+)
hnrnpa3 hnrnpa3 other upstream 1059776 18010757 ~ 18017413 (+)
hoxd10a hoxd10,LOC102792757 other upstream 1195861 17860160 ~ 17881328 (+)
myo3b myo3b other upstream 1878599 17127881 ~ 17198590 (+)
tmsb4x NA other downstream 6648 19089418 ~ 19090785 (+)
igsf3 LOC103352919,LOC104967650 other downstream 305245 19388015 ~ 19459274 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 885590 19968360 ~ 19993324 (+)
myo16 myo16,LOC103372229 other downstream 1071085 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 1409408 20492178 ~ 20521274 (+)

Expression


Co-expression Network