LOC120569791


Basic Information

Item Value
gene id LOC120569791
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19082133 ~ 19088916 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817868.1
GTGTCATCAAGTAGTTAATTTTCAGTTTTACTTTAAAGATTGCCAGTGCCACTGTTTCTTGCAAGGTTGTCATTCAAGAATCATAAGGAATCAGTACCACAATGACAGTGACGTGTTGGATGCACTTGCTGCTGTTCTCTCTGTGTTGCCATTATGAGATCCAGCCTGCTGCATGTAAACCTGTGTGGATGACACCACAGTTCCCTTGTGATGTCACAGCTGACAATACCTCTCAGGTTCTATTTGACTGTAAGGGGCGTCATCTGCAGAGAGTACCTGATGGGATAACGAGTAATGCAACTGAGCTCAACTTATCAGAAAATTTCATTAAGAATATTTCGGTTAATTCATTTTCCAAACTGCCGAATCTGACTCAGCTCAATCTCAGCTGGGCAAACAAGAACAGAGAAGTGATGATTGCTgtgaatgctttcaaaaatctGACAAAACTGACTGAACTGATACTGACTGGCAATGGTCTGAAGGAAATTCCCAGCAATCTCCCTCTCAGCTTGGAAATCCTCGAGCTGAACACAAACCACATTATGTCAGTGGATAACAGGAGCCTTGCTGGCTTAACAAAGGTGACACATTTACAGTTATCCAAAAACTGCTACTTCTGGAATCCTTGTGGGAAATCTGTTACGATTATGGAAGACAGTTTTGCAGTTATGAGCAAACTGCAGGCTCTGGACTTGTCGTATAACAACTTAACTCAAGTTCCCAAAAGATTACCCCAATCATTACGCATATTATACCTGGGTGATAATGCAATTCAGTACATATCTGAAGATGATTTTCTTGGGCTACCAAATGTAAAAGTCCTAAAAATACAAGGGAACTGTCCAAGATGTCAAACTGCTCCATATCCCTGTGTTCCTTGCAAAAACGGTTCTCTTGGTATCCATCCTAATGCATTTCACAGTCTGACACAGCTCGAGACACTGAACCTGGGAGGAAGCTCACTGGACCACCTGAATCCCTCCTGGTTTGAGAAGCTGAACAAGCTTAAACAATTGTTCCTGTCATTTAACTTCTTGTTAAAAGCAATTACTGAGGAGGCAACATTTCTAAGATATCTTCCAAAGTTGGAAAAACTTGATCTTTCTTTCAACTTTGCTCTCAAGTTATACCCTACAACATTAAATCTCTCAACAGAGTTTTCAAATCTTGTGTCACTCAGAACTTTGCATTTGGATGGTTTGGTCTTCCAGAGTATTGGACCGGGCACACTCAGACCTCTGTACAAGCTCGAACATCTACATGCACTAAATTTAGGGACTAACTTCATTATTCACTCTGATTCCACCATATTCAGCCAATTCCATCACCTGAAAATGATATACCTTGCAGAAAACAGGCTGTATCCCATTCCAGTGAGTAGTCCACCACATCCAAGTAACGGATACAATCCAAAGAGGTCGGACCTTTCTATTTCACCGCTCGTAAAATTCCATCCGAAAGATTTTGATTATGAGCTGTCACACGGCCTTATCAAGGAAGAGTGCTTTGAGTCTGGACGAGTGCTAATACTCAGCTCAAATAATCTTTTCTTCATTTCTCCAAAGCAATTCGAGGGCTATGGAAATATTGCATGTCTCAACCTCTCAGGAAATGGATTTTCAGCAGCACTTAATGGAACAGAGTTCTCTTTGCTGCCTAATCTGACATACCTGGACCTGTCATTCAATAAGATTGATCTGGCCTATGACTACGCTTTCAAAGAACTAAAGAAACTACAAGTGCTGGACCTCAGTAACAATGATCATTACTTTAAAGCGTTCGGGGTTACGCATAATTTAAATTTTACAAAAAATCTGCCTGCTCTGAGGGTGCTGAACATGAGTCATAACTCCATTTCTACACTAACGACCAAACAGATGTACAGCAAATCATTAACAGAACTTCAGTTTACAAATAATAATCTTGGGACTCTTTGGAAAGAACGGGATGGCTCATATAAAATGCTTTTTACTAATCTTACTAATTTGACGATTTTAGATATATCCCACAACAAGATTGCAAAGATTCCAGACAATGTTTATGAATATCTGCCACGTAACCTCACCATACTACGCATAAGTCACAACTTGCTTACTGATTTCATATGGGACAAGCTCAAGTTTTTCCATCAAATTCAAATTTTAGACCTGGGCTTCAATTCTTTATCTAATGTAACAGGCATAAACTCAAACGTCATCCACAATTTGACTTTCCTTGACCTGAGTCATAATCTGATTTTCCACTTGGACAATTGGTTTCTAAAGGGTGCAAAAAGCCTGATGACTCTTAGACTTGACTACAACAAACTGACTATCATCAATGAATCCACTTTCCAATCGAGACCCGAATCTAAGATTCAGACCTTGTTCTTGCAGGGTAACCCGTTCCAATGTACCTGTGATTCATTAGATTTCATTGTGTGGATTGAAAACAGTGATGTAAAGATCCCACGACTGACCACCGAGGTGCTATGTGACACACCATCAAACCAGAAGGGACAAGCTCTGATCCACTTTGACATTAACCAGTGTGTAAATGACAGTCAGGCGTTCTTGATCTACATTCTCACAAATTTcttaattgttgtttttatgtttgtggcaACAGTTGCTCACTTATTTTACTGGGATGCTTCCTATGTCCTACACTATATGAAAGCTAAGCTGAAGGGATACATATCCATGAACTCGCTAGCTGGTGTTTATGATGTCTTTGTGACTTACGACACCACAGATCCACATGTCTCTGAGTGGGTGATGAGGAATCTGCGAGTTAAActggaagaggaaggagagaagcaTCTCCCCCTGTGTCTGGAGGAGAGGGATTGGCTTCCTGGAGTCCCACTGGTAGATAACCTCGCTCAGAGCATCCGGTACAGTCGGAAGACCCTGTTCGTCTTAACGGAGGGCTACGTTAAGACCGGGGTTTTCAAGATGGCGATGTATCTGGCCCACCAAAGACTGCTCGATGAAAATGTGGATGTGATCGTGCTGCTGATGCTTGAACCCGTCCTGCAGCATTCTCACTTCCTGCGCCTGAGGAGGAGGCTGTGCGAGAAGAGTGTTGTAGAGTGGCCGAGAACAGCTGCCGCACAGCCCTGGTTTTGGCAGAACCTGAGAAATGTGGTCAGAGTGGACAACCAGGTGATGTACAACAAGACTTATTCAAAGTACTTCACCAGCAAGTGAACCAATGACAACTGTTTGGGAATGATTTataacttttaaaatgtggacAATAACATCTGAAGCCTTTTTTAAAACTAGTGTTCTATATCAACACCGATGTGGTCATTTACAGCTTTTAATCACTGCCTAATAGAAGACAAATAAAGACATtcgttattattatgttttttttatttacaatgaCATTGAATGTCTTGTACTTTGTTTGCAAATattacagtagcctatatgaATACATAAATCCATTAAAAATCTGTGCCATTTGTAGATGTAAA

Function

GO: NA

KEGG:

id description
K10170 TLR8, CD288; toll-like receptor 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817868.1 True 3469 mRNA 0.41 2 19082133 19088916

Neighbor

gene id symbol gene type direction distance location
frmpd4 frmpd4 coding upstream 5350 19042151 ~ 19076783 (+)
LOC120570209 NA coding upstream 119959 18956693 ~ 18962174 (+)
LOC120570212 NA coding upstream 128452 18947919 ~ 18953681 (+)
cnmd LOC103352944,LOC102292237 coding upstream 146185 18931420 ~ 18935948 (+)
si:ch211-199f5.1 LOC104947498,LOC103352952,LOC100689962 coding upstream 150659 18927543 ~ 18931474 (+)
egfl6 egfl6 coding downstream 15270 19104186 ~ 19112692 (+)
rab9a rab9a,LOC104925019,LOC103392032 coding downstream 24489 19113405 ~ 19116298 (+)
ofd1 ofd1,LOC104947485,LOC104947524 coding downstream 29790 19118706 ~ 19128142 (+)
glra2 glra2,LOC102799111 coding downstream 85031 19173947 ~ 19186008 (+)
mospd2 mospd2 coding downstream 107052 19195968 ~ 19211831 (+)
G125115 NA non-coding upstream 227103 18852566 ~ 18855030 (+)
G125114 slitrk5,LOC100690770 non-coding upstream 230338 18845407 ~ 18851795 (+)
G125110 NA non-coding upstream 252225 18829619 ~ 18829908 (+)
G125109 NA non-coding upstream 252607 18828933 ~ 18829526 (+)
G125104 NA non-coding upstream 253220 18828686 ~ 18828913 (+)
G125266 NA non-coding downstream 378516 19467432 ~ 19468790 (+)
G125267 NA non-coding downstream 402622 19491538 ~ 19586655 (+)
G125274 NA non-coding downstream 462442 19551358 ~ 19551941 (+)
G125369 NA non-coding downstream 659150 19748066 ~ 19814268 (+)
LOC120570225 NA non-coding downstream 703093 19792009 ~ 19801958 (+)
LOC120570507 NA other upstream 254586 18818753 ~ 18827547 (+)
G125079 NA other upstream 377605 18703028 ~ 18704528 (+)
hnrnpa3 hnrnpa3 other upstream 1064720 18010757 ~ 18017413 (+)
hoxd10a hoxd10,LOC102792757 other upstream 1200805 17860160 ~ 17881328 (+)
myo3b myo3b other upstream 1883543 17127881 ~ 17198590 (+)
tmsb4x NA other downstream 502 19089418 ~ 19090785 (+)
igsf3 LOC103352919,LOC104967650 other downstream 299099 19388015 ~ 19459274 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other downstream 879444 19968360 ~ 19993324 (+)
myo16 myo16,LOC103372229 other downstream 1064939 20153855 ~ 20265590 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 1403262 20492178 ~ 20521274 (+)

Expression


Co-expression Network