acod1 (acod1)


Basic Information

Item Value
gene id acod1
gene name acod1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22747632 ~ 22750454 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039817903.1
AATCTTCAGATGGTGTCACCACCTATAAAATGCAGCTGCACTTAGGTGTTTTGTCACTTGAAGACATTGTTGAGCTACAACAATGCTGCGCAAGGGTATTACAGAGAGCTTTGGAGCTGCTATCCATGCCCTCAACACCACCCAGCTGACAGATGGTGTGATTAACAGGAGCAAAAGGATGATGCTGGACACCCTGGGTGTTGGGCTGTTAGGAACCAGGACAGCTGTGTTTAACAAGGCTCTAGCATACAGCCAGTTGTTCACGTCTCACGAGAGCAGCAGTGTTTGGGGTAAATCAGAGATAACTCTTCCTCCTCATTACGCTGCATTTGTCAATGGCATCGCGGTTCACTCCATGGACTTTGATGACACTTGGCACCCTGCTACTCATCCCTCAGGAGCGGTGCTACCTGCCCTGCTGGCCCTCGCAGAGACACTGCCCAGCCAGCCCTCGGGTCTAGACCTGCTGCTGGCCTTCAATGTTGGTATTGAGGTGCAGGGCAGACTCATGAGGTTCTCCAGAGAGGCCTACAACATCCCTGAGAGATTCCACCCCCCCAGTGTTGTTGGGGTGATGGGTAGCGCTGCAGCCTCAGCTAAGCTCCTGGGTCTGTCCCCTGCGCAGTGTACTAATGCTCTGGCTATCGCAGCCTCCTCTGCTGGGGCTCCTTTGGCCAACGCTGCCACGCAAACCAAACCTCTCCATATTGGAAATGCTGCTCGGAGAGGCCTGGAGGCCGCACAGCTGGCCCAGAGGGGACTGGAGGGGAATCCAGCCATCCTGGATGTGAACTGCGGGTTTGGGGTTTACTACAAAGACTACAGTCCTTCAGCAATGGCAGTTTCCGCTTCTAGTGACTTTAAATGGATTCTGGAAGATCAGGATGTGGCCTTCAAGCGCATCCCTGCTCACCTGGGGATGCACTGGGTTGTGGATGCAGCGCTGGCAGCCCGCGCAAAGCTTGAAAACTCCGTCAGGAACTTTGACCTCAGCCAGATCAGGCACGTCACACTTCGAGTGCCTCCATCCAAGTACGTTGACTGTCCCTTCCCTGCCACAGAGCACCAAGCCAGGCACTCATTTCAGTTCAACGCCTCTTGCGCCCTGCTGGATAACAAAGTAACAGTGTCTTCCTTCAGTGAAGCTCAGATTAACCGGCCTGCTCTGAAGGAGCTCTTGTCCAAAGTCGAGGTGGAGACCCCTAAAGATAACCTACCCAGCTTTGACAAGATGTACTGTGAGGTTGAGATGGAGACAGATCAGGGGCAGAGATATGTAGCCAGATGTGATACCTTTTATGGCCACTGGAGGAAGCCACTGAGTCAGAAGGACCTGGTGGAGAAGTTCAGTGTTAATGCTTCTTCAGTGTTGTGCACAGAGGGAGTAGAGGGTGTGATTGATGTGACAGGAAACATcgagagagtgagagaatgcTCAATCTTGGGTTCATATCTGAGAATGACAAGTAGTCAACATGAGCAGTTATACAGCACAAGGAGTTTGTGATTATTCAGGTTTGGTGAAGCCAGTGCA

Function

symbol description
acod1 Predicted to enable aconitate decarboxylase activity. Acts upstream of or within defense response to bacterium and regulation of reactive oxygen species biosynthetic process. Predicted to be active in mitochondrion. Orthologous to human ACOD1 (aconitate decarboxylase 1).

NR:

description
cis-aconitate decarboxylase

GO:

id name namespace
GO:0019543 propionate catabolic process biological_process
GO:0047547 2-methylcitrate dehydratase activity molecular_function

KEGG:

id description
K17724 IRG1; aconitate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039817903.1 True 1534 mRNA 0.52 5 22747632 22750454

Neighbor

gene id symbol gene type direction distance location
cln5 cln5,LOC102794031 coding downstream 3931 22740653 ~ 22743701 (-)
slain1a slain1 coding downstream 92647 22641141 ~ 22654985 (-)
wu:fc50b12 LOC106098708,LOC104958628,LOC108232414,LOC105941296 coding downstream 106557 22639505 ~ 22641075 (-)
kbtbd7 kbtbd7,LOC102797434 coding downstream 109387 22634565 ~ 22638245 (-)
zgc:101559 LOC100710420,LOC104958630,LOC102797725,LOC103357227,LOC101463598 coding downstream 114939 22629693 ~ 22632693 (-)
lmo7a LOC104962234 coding upstream 42208 22792662 ~ 22841138 (-)
uchl3 uchl3,LOC102792853 coding upstream 91652 22842106 ~ 22847730 (-)
gpr183a gpr183 coding upstream 369997 23120451 ~ 23123901 (-)
si:ch211-184m13.4 LOC104962230,LOC100690478,LOC103357536,LOC101477149 coding upstream 388566 23139020 ~ 23140683 (-)
zic5 zic5,LOC102789084 coding upstream 484568 23235022 ~ 23239145 (-)
G126341 fbxl3 non-coding downstream 9795 22733568 ~ 22737837 (-)
G126334 mycbp2 non-coding downstream 24041 22723126 ~ 22723591 (-)
LOC120569264 NA non-coding downstream 267317 22478563 ~ 22480315 (-)
G126212 NA non-coding downstream 359463 22387712 ~ 22388169 (-)
G126211 NA non-coding downstream 360850 22386295 ~ 22386782 (-)
G126353 NA non-coding upstream 20258 22770712 ~ 22770920 (-)
G126486 itgbl1 non-coding upstream 761088 23511542 ~ 23518025 (-)
G126489 itgbl1,LOC102787049 non-coding upstream 783241 23533695 ~ 23535597 (-)
G126510 upf3a,LOC102786442 non-coding upstream 932340 23682794 ~ 23690101 (-)
G126526 NA non-coding upstream 948890 23699344 ~ 23700062 (-)
scel scel other downstream 82160 22655579 ~ 22665472 (-)
katnal1 katnal1,LOC106527129,LOC104958633 other downstream 118517 22615496 ~ 22629115 (-)
si:dkey-100n23.5 LOC103357194,LOC107389748,LOC106527133,LOC108232487,LOC102079199,LOC107091445,LOC103391942,LOC106962244,LOC103134722,LOC104958636 other downstream 165225 22531634 ~ 22582407 (-)
senp7 NA other downstream 275710 22442212 ~ 22471922 (-)
LOC120569718 LOC104941591 other downstream 512775 22230333 ~ 22234857 (-)
klf5b LOC104962226,LOC103357491 other upstream 211745 22962199 ~ 22967901 (-)
gpr18 gpr18 other upstream 359579 23110033 ~ 23123908 (-)
si:ch211-218d20.15 LOC104960513,LOC101470276,LOC102197480,LOC102292608,LOC107099189,LOC100692635 other upstream 1204392 23954846 ~ 23957206 (-)
cnga4 cnga4,LOC103356095 other upstream 1920768 24671222 ~ 24679011 (-)
G127032 neb other upstream 2948274 25698728 ~ 25701551 (-)

Expression


Co-expression Network