cers6 (cers6,LOC102785199)


Basic Information

Item Value
gene id cers6
gene name cers6,LOC102785199
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16860410 ~ 16876464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818121.1
TACTTCCCTACACTGGGATAGCTGAGGGGAAGAGGACGGACGGCGACCTCGTACGGATATCTCATCATCAGCCGAGTCTGCACGGTCAGATCGCCTGCGAGAGAGCTCCGGGATACAGCGGGCCGTCGATTTCTCTTTCCACCCGGTCACGGTGTCTGCTGCAGGGAGATGGCCGGTATTTTGGCGTGGTTTTGGAACGAGAGGTTCTGGCTCCCACATAATGTAACCTGGGCTGActtaaaaaacacagatgaagCAACGTTCCCGCAAGCCGAGGATCTCTATCTGGCGTGTCCTTTAGCATTCTGCATCTTTATGATACGGCTGGTTTTCGAAAGGTTTATTGCAAGACCATGTGCCATGGGCCTGAAGATCCAAGCCAACGGGCCACAAAAAGCACAACCCAATGCTATCCTGGAGAAGGTTTTCACTGCTATAACCAAGCACCCAGATGAGAAGAGGTTGGAGGGCCTGTCCAAGCAGCTCGACTGGGATGTGCGGACCATCCAGCGCTGGTTCAGACAACGCCGAAACCAGGAGAAGCCCAGCACTCTCGCCCGATTCTGTGAAAGCATGTGGAGATTTACATTCTATCTATACATATTTACCTATGGAGTGCGTTTCCTTAAAAAGACTGCATGGCTTTGGAACACTAAAGAGTGCTGGTACAACTACCCTTACCAGCCACTGACTGTGGACATCCATTATTACTATATACTGGAGCTGTCTTTCTACCTTTCCTTACTCTTTTCCCAATTCACAGACATCAGGAGGAAGGATTTCCTGATCATGTTCCTGCACCATGTGGCAACAATTTCCCTCATCACCTTTTCCTACGTGAACAACATGGCACGAGTTGGAACTCTGGTCATGTGTCTCCACGATGCAGCCGACGTGCTGATAGAGGCTGCCAAAATGGCCAACTATGCCAAATGTCAGATACTGTGCAACCTCCTGTTTGCAATGTTTGCAATTCTCTTTATAAGTTCCAGGCTGGGAGTTTACCCTGTCTGGATTTTAAATACCACCTTGTTCGAGAGTTGGGAGATTGTAGGGCCCTACCCGTCCTGGTGGGTCTTCAACCTGCTTCTGATCCTGCTGCAGCTACTTCACTCCTTCTGGTCTTACCTCATAGTGAAGACAGCGTGCCAAACCATCTCCAAAGGAAAGGTGGGAAAATGGAATCCGTTGCATGTCTCTAAAGACGACCGCAGTGACATCGAGTCCAGCTCTGATGAGGATGACAGCCCCCCACCCAATCACAAgctccacagcagcagcaccaccaaCGGGACCAACAAAAATCATGGGACCAATGGCTACCTGACAGGGCCCCCATATGCCGATGAACACTGACTAACACAACATTGGAGCCATGCTAAAgacaccatccatccatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgcagtTTTCAGTTATCAGTTTGATCCTTTACTAATTTCCTCGTGCAATTTATTCTCTTCATCTATATATTTGTATCAAACTGCACTCAGTGAAATATCAAAGCACTCCTATTGGTACAACCCACTCTCTGTTTAGCCAGTGAATAAAATTCCAATTTATGATGTAAGCATGCTACTTTAACATACAGTAGTCTGGCATACTGGGGGTGTGTTTTTCCTTATGTTCGTGTTTTtctatgttatttatttttttataaatatgtttgcAGATGGTGGGACATCTACTTTACTTTGATGTCAGTGTTAAAGATGAAATAATCTTGAACACAGATGTTTTTTTCACACCACACATCATAAGTATTAGCAAAATGCTAGATACCTGGGTTTACTTTCAACGCTACACCCCCAAAGATATGCCAAAAATGTGTGACGTTTTCtcacattttaaacacattctCCACTCAAACTGTGTAAGAGATGTCAATAACAGTATTATGTGTGTCTTATATGGCTAGATGCTGTATTCCCTATTAAAGCATTTGGTTAAGTATTCTGATACGTTTCTGGTAAGCATTTCATGAAAAGCCATTTGTCCTCTAAGGAGACAGACATGAGTTGTTTGAGTTattcaataaattaaaaaacatgaagATTGCAAAA

Function

symbol description
cers6 Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including central nervous system; intestine; pronephros; spinal cord neural tube; and trigeminal placode. Orthologous to human CERS6 (ceramide synthase 6).

NR:

description
ceramide synthase 6 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818121.1 True 2100 mRNA 0.45 11 16860410 16876464

Neighbor

gene id symbol gene type direction distance location
b3galt1b b3galt1 coding upstream 27416 16776449 ~ 16832994 (+)
xirp2b xirp2,LOC102308033,LOC104949804 coding upstream 85105 16757646 ~ 16775305 (+)
galnt3 galnt3,LOC102786846 coding upstream 147732 16704149 ~ 16712678 (+)
ttc21b ttc21b coding upstream 157115 16690517 ~ 16703295 (+)
scn1laa LOC103371728,LOC103392165,LOC101464243 coding upstream 174924 16659981 ~ 16685486 (+)
nostrin nostrin coding downstream 1245 16877709 ~ 16886192 (+)
LOC120570364 g6pc2 coding downstream 15734 16892198 ~ 16894101 (+)
LOC120570362 NA coding downstream 33609 16910073 ~ 16919833 (+)
LOC120570363 NA coding downstream 43532 16919996 ~ 16929385 (+)
rdh1 LOC102203631,LOC106926445,LOC103461719,LOC103134343,LOC100699208 coding downstream 53658 16930122 ~ 16938095 (+)
G124430 NA non-coding upstream 156481 16703371 ~ 16703929 (+)
G124407 cobll1 non-coding upstream 228069 16598643 ~ 16632341 (+)
G124408 NA non-coding upstream 230296 16596708 ~ 16630114 (+)
LOC120570498 NA non-coding upstream 391774 16468040 ~ 16468636 (+)
G124371 kcnh7 non-coding upstream 443958 16414609 ~ 16416452 (+)
G124524 lrp2 non-coding downstream 80261 16956725 ~ 16957914 (+)
LOC120570570 NA non-coding downstream 130121 17006585 ~ 17008508 (+)
LOC120570569 NA non-coding downstream 133681 17010145 ~ 17011912 (+)
G124627 tlk1,LOC102777640 non-coding downstream 380378 17256842 ~ 17257502 (+)
G124631 NA non-coding downstream 385273 17261737 ~ 17262826 (+)
dap1b dapl1 other upstream 758768 16099271 ~ 16101642 (+)
LOC120570321 NA other upstream 882536 15970982 ~ 15977874 (+)
galnt13 galnt13,LOC102796746 other upstream 1199396 15618514 ~ 15661014 (+)
sumo3b sumo3,LOC106562996,LOC107668404,LOC106523318 other upstream 1286562 15506984 ~ 15573848 (+)
trpm2 trpm2 other upstream 1701473 15137587 ~ 15158937 (+)
col28a2a LOC103355072,LOC104961148,LOC102781941 other downstream 111607 16988071 ~ 17023560 (+)
myo3b myo3b other downstream 251417 17127881 ~ 17198590 (+)
hoxd10a hoxd10,LOC102792757 other downstream 983696 17860160 ~ 17881328 (+)
hnrnpa3 hnrnpa3 other downstream 1134293 18010757 ~ 18017413 (+)
G125079 NA other downstream 1826564 18703028 ~ 18704528 (+)

Expression


Co-expression Network