LOC120569951 (LOC104957843,LOC103367760,LOC105922114,LOC103149907)


Basic Information

Item Value
gene id LOC120569951
gene name LOC104957843,LOC103367760,LOC105922114,LOC103149907
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 29305826 ~ 29307000 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818174.1
TATCATGGTGGGTATAAAAGTGACACAGTTGGGATGGGCAAAGTACCAGTGCAATCAGGGATAGGACTGACCACCAAAATGGGCAAAATCATCTTCTACGAGGACAAGAACTTCCAGGGTCGCTCCTATGAGACCAGCAGCGACTGTGCCGAGCTGACCTCCTACCTGAGCCGCTGCAACTCCTGCAGGGTGGAGAGCGGCTGCTTCATGGTCTACGAACGTCCAAATTTCATGGGCCACCAGATGCTGGCAAGGAGGGGAGAGTACCCTGACAACCAGCGCCTGATGGGTATGACCATGAGTGACTGCATCCGTTCCAGCCGCATGATCCCCACGCACAGAGGTCCATTTAGGATGAGGATCTACGAGAGGGAGAACTTCAGAGGTCAGATGAATGAGCTGACGGACGACTGCGACAACATCCAGGATCGTTTCCGCATGTCCGACTGCCAGTCTGCCCACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCCAATACAGAGGCAGGATGCTGTACCTGAGGCCCGGGGAGTACAGGAGCATGAGAGACATGGGAATGGGTCCCATGGACATGAGGATTGGATCCATGCGACGTATCATGGACTCCTGTTAAAGAACAGAACAGGATCGAGACTTGAAAATGTAAtcaacaaatattaaaaaagaagTTATCAATTTATCGAGTTTCAAAACGCCGGGCAGAAATTCTGGGCACAGATTAGACATCAGAGAAAGAAATTGCATGAATTATCAGCACCCAACTGTTCCGGGATGTCAGGACAAATTGAGCTGTAGTGAATGCTGCTACTTTAATAACTGTATCTAATAGCCAAGTCaagacttcttcttcttctaactATGAAATGTGTTATGTCATATTTGATGCACGTGacattaaaaatgaatatcaaaagaacaaaaaaa
>XM_039818175.1
AGTGACACAGTTGGGATGGGCAAAATCATCTTCTACGAGGACAAGAACTTCCAGGGTCGCTCCTATGAGACCAGCAGCGACTGTGCCGAGCTGACCTCCTACCTGAGCCGCTGCAACTCCTGCAGGGTGGAGAGCGGCTGCTTCATGGTCTACGAACGTCCAAATTTCATGGGCCACCAGATGCTGGCAAGGAGGGGAGAGTACCCTGACAACCAGCGCCTGATGGGTATGACCATGAGTGACTGCATCCGTTCCAGCCGCATGATCCCCACGCACAGAGGTCCATTTAGGATGAGGATCTACGAGAGGGAGAACTTCAGAGGTCAGATGAATGAGCTGACGGACGACTGCGACAACATCCAGGATCGTTTCCGCATGTCCGACTGCCAGTCTGCCCACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCCAATACAGAGGCAGGATGCTGTACCTGAGGCCCGGGGAGTACAGGAGCATGAGAGACATGGGAATGGGTCCCATGGACATGAGGATTGGATCCATGCGACGTATCATGGACTCCTGTTAAAGAACAGAACAGGATCGAGACTTGAAAATGTAAtcaacaaatattaaaaaagaagTTATCAATTTATCGAGTTTCAAAACGCCGGGCAGAAATTCTGGGCACAGATTAGACATCAGAGAAAGAAATTGCATGAATTATCAGCACCCAACTGTTCCGGGATGTCAGGACAAATTGAGCTGTAGTGAATGCTGCTACTTTAATAACTGTATCTAATAGCCAAGTCaagacttcttcttcttctaactATGAAATGTGTTATGTCATATTTGATGCACGTGacattaaaaatgaatatcaaaagaacaaaaaaa

Function

NR:

description
PREDICTED: gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818174.1 True 929 mRNA 0.48 3 29305826 29307000
XM_039818175.1 False 866 mRNA 0.48 3 29305844 29307000

Neighbor

gene id symbol gene type direction distance location
raph1a LOC103372763,LOC102310239 coding upstream 413206 28804244 ~ 28892620 (+)
LOC120570350 NA coding upstream 568268 28735598 ~ 28737558 (+)
LOC120570124 NA coding upstream 596944 28707542 ~ 28708882 (+)
LOC120570328 NA coding upstream 694342 28609691 ~ 28611484 (+)
LOC120570107 NA coding upstream 808224 28492168 ~ 28497602 (+)
LOC120569953 LOC107102032,LOC105922254,LOC104957841,LOC105922255 coding downstream 3354 29310354 ~ 29311230 (+)
LOC120569955 LOC108238847,LOC106534872 coding downstream 9076 29316076 ~ 29316987 (+)
LOC120569959 LOC101464856 coding downstream 39013 29346013 ~ 29346913 (+)
LOC120569956 LOC103391627,LOC102200884,LOC106675571,LOC103149914,LOC106933244 coding downstream 42308 29349308 ~ 29350179 (+)
LOC120569958 LOC103391627,LOC102200884 coding downstream 46969 29353969 ~ 29354850 (+)
G127872 NA non-coding upstream 12268 29292980 ~ 29293558 (+)
G127805 NA non-coding upstream 221166 29078731 ~ 29084660 (+)
G127806 NA non-coding upstream 261605 28984700 ~ 29044221 (+)
G127784 NA non-coding upstream 367336 28938151 ~ 28938490 (+)
G127762 NA non-coding upstream 389630 28915972 ~ 28916196 (+)
G127893 NA non-coding downstream 87183 29394183 ~ 29398629 (+)
G127896 LOC101169261,LOC102201764,LOC101061248,LOC102292499 non-coding downstream 149003 29456003 ~ 29456885 (+)
G127934 LOC102777138,LOC101467669,LOC104960780,LOC108238795 non-coding downstream 154912 29461912 ~ 29462923 (+)
G127942 NA non-coding downstream 179231 29486231 ~ 29489650 (+)
G127949 NA non-coding downstream 216351 29523351 ~ 29615024 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other upstream 6465 29296484 ~ 29299361 (+)
G127814 itgb5 other upstream 264602 29028902 ~ 29041224 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other upstream 895987 28388643 ~ 28409839 (+)
LOC120569906 NA other upstream 2588429 26713350 ~ 26717397 (+)
zmym2 zmym2 other upstream 2821738 26449443 ~ 26484088 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 152144 29459144 ~ 29459978 (+)
G127935 LOC103149918,LOC106933234,LOC104960782,LOC104932527,LOC108238793,LOC103482149,LOC105920790 other downstream 160144 29467144 ~ 29474550 (+)
G127938 LOC100695514,LOC102778272,LOC103367768,LOC104960783 other downstream 169112 29476112 ~ 29478950 (+)
G127971 hspd1 other downstream 314692 29621692 ~ 29622929 (+)
LOC120569632 hspe1,mob4,LOC101472107,LOC102310674,LOC100701317,LOC106530744,LOC102783361,LOC103156730,LOC108238849,LOC107095707,LOC106582314,LOC101078365,LOC107389570,LOC104932517,LOC105923971 other downstream 319457 29626457 ~ 29640925 (+)

Expression


Co-expression Network