LOC120569955 (LOC108238847,LOC106534872)


Basic Information

Item Value
gene id LOC120569955
gene name LOC108238847,LOC106534872
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 29316076 ~ 29316987 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818178.1
ATGTAACTTGTTCAGACAGGCAGCATATCAGTTCAATAACAGTTCTCTGAGAGATCTGAGGAATCACCGCAATCAACATGGGCAAGGTCATCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGTGCATGAGCGACTGCTCTGACATGACCTCCTACCTGAGCAGGTGCCACTCCTGCAGGGTGGAGAGTGGCTGCTTCATGGTCTACGACCGTCCCAACTACATGGGAAACCAGTACTTCATAAGGAGGGGCGAGTACGCTGACTACATGAGCATGATGGGAATGAGCGGTGGTATCAGGTCTTGCCGTATGATCCCCATGCACAGAGGCCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCGGTGGTCAGAGTTACGAGCTGATGGACGACTGTGACAACATCATGGACCGTTACCGTATGAACGACTGCCAGTCTTGCCACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCCACTACAGAGGCAGGATGATGTACATGAGGCCTGGAGAGTACAGGAGCTTCAGGGACATGGGCATGAGTGGCATGAGGTGGATGAGCATGAGGCGTATCATGGACATGTGCTAATTGTACATTTTGACTTCAATAAATTATATAACTTTCTAAA

Function

NR:

description
PREDICTED: gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818178.1 True 645 mRNA 0.50 3 29316076 29316987

Neighbor

gene id symbol gene type direction distance location
LOC120569953 LOC107102032,LOC105922254,LOC104957841,LOC105922255 coding upstream 4846 29310354 ~ 29311230 (+)
LOC120569951 LOC104957843,LOC103367760,LOC105922114,LOC103149907 coding upstream 9076 29305826 ~ 29307000 (+)
raph1a LOC103372763,LOC102310239 coding upstream 423456 28804244 ~ 28892620 (+)
LOC120570350 NA coding upstream 578518 28735598 ~ 28737558 (+)
LOC120570124 NA coding upstream 607194 28707542 ~ 28708882 (+)
LOC120569959 LOC101464856 coding downstream 29026 29346013 ~ 29346913 (+)
LOC120569956 LOC103391627,LOC102200884,LOC106675571,LOC103149914,LOC106933244 coding downstream 32321 29349308 ~ 29350179 (+)
LOC120569958 LOC103391627,LOC102200884 coding downstream 36982 29353969 ~ 29354850 (+)
LOC120569957 LOC103391627,LOC102200884 coding downstream 41184 29358171 ~ 29359061 (+)
LOC120569960 LOC104958343 coding downstream 49662 29366649 ~ 29367486 (+)
G127872 NA non-coding upstream 22518 29292980 ~ 29293558 (+)
G127805 NA non-coding upstream 231416 29078731 ~ 29084660 (+)
G127806 NA non-coding upstream 271855 28984700 ~ 29044221 (+)
G127784 NA non-coding upstream 377586 28938151 ~ 28938490 (+)
G127762 NA non-coding upstream 399880 28915972 ~ 28916196 (+)
G127893 NA non-coding downstream 77196 29394183 ~ 29398629 (+)
G127896 LOC101169261,LOC102201764,LOC101061248,LOC102292499 non-coding downstream 139016 29456003 ~ 29456885 (+)
G127934 LOC102777138,LOC101467669,LOC104960780,LOC108238795 non-coding downstream 144925 29461912 ~ 29462923 (+)
G127942 NA non-coding downstream 169244 29486231 ~ 29489650 (+)
G127949 NA non-coding downstream 206364 29523351 ~ 29615024 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other upstream 16715 29296484 ~ 29299361 (+)
G127814 itgb5 other upstream 274852 29028902 ~ 29041224 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other upstream 906237 28388643 ~ 28409839 (+)
LOC120569906 NA other upstream 2598679 26713350 ~ 26717397 (+)
zmym2 zmym2 other upstream 2831988 26449443 ~ 26484088 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 142157 29459144 ~ 29459978 (+)
G127935 LOC103149918,LOC106933234,LOC104960782,LOC104932527,LOC108238793,LOC103482149,LOC105920790 other downstream 150157 29467144 ~ 29474550 (+)
G127938 LOC100695514,LOC102778272,LOC103367768,LOC104960783 other downstream 159125 29476112 ~ 29478950 (+)
G127971 hspd1 other downstream 304705 29621692 ~ 29622929 (+)
LOC120569632 hspe1,mob4,LOC101472107,LOC102310674,LOC100701317,LOC106530744,LOC102783361,LOC103156730,LOC108238849,LOC107095707,LOC106582314,LOC101078365,LOC107389570,LOC104932517,LOC105923971 other downstream 309470 29626457 ~ 29640925 (+)

Expression


Co-expression Network