LOC120569957 (LOC103391627,LOC102200884)


Basic Information

Item Value
gene id LOC120569957
gene name LOC103391627,LOC102200884
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 29358171 ~ 29359061 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818180.1
GTATAAAAGGAAAGGGTTAAACAGGTAGGAAGGCAGTTCAGGAGCAGCAGCACATCTACAGCCAACATGACCAACACCAACATGAACATGAGGGGCAAGATCATCTTCTACGAGGAGAGGAACTTCCAGGGTCGCAACTATGAGTGCATGAGCGACTGCTCAGACATGACCTCCTACCTGAGCAGGTGCCACTCCTGCAGGGTGGAGAGTGGCTGCTTCATGGTCTATGACCGTCCCAACTACATGGGAAACCAGTACTTCATGAGGAGGGGCGAGTATGCTGACTACATGAGCATGATGGGAATGAGGGACTGCATCAGGTCTTGCCGTATGATCCCCATGCACAGAGGTCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCGGTGGTCAGAGTTACGAGCTGATGGACGACTGCGACAACATCATGGACCGTTACCGTATGAACGACTGCCAGTCCTGCCACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCAACTACAGAGGCAGGATGATGTACATGAGGCCTGGAGAGTACAGGAGCTTCAGGGACATGGGCATGAGTGGCATGAGGTGGATGAGCATGAGGCGTATCACTGATTCCTGCAACTAAATGTTCACTGAATCTGTCAAACaccattaaataaataatgtctgCACTCTTTTAA

Function

NR:

description
PREDICTED: gamma-crystallin M3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818180.1 True 676 mRNA 0.51 3 29358171 29359061

Neighbor

gene id symbol gene type direction distance location
LOC120569958 LOC103391627,LOC102200884 coding upstream 3321 29353969 ~ 29354850 (+)
LOC120569956 LOC103391627,LOC102200884,LOC106675571,LOC103149914,LOC106933244 coding upstream 7992 29349308 ~ 29350179 (+)
LOC120569959 LOC101464856 coding upstream 11258 29346013 ~ 29346913 (+)
LOC120569955 LOC108238847,LOC106534872 coding upstream 41184 29316076 ~ 29316987 (+)
LOC120569953 LOC107102032,LOC105922254,LOC104957841,LOC105922255 coding upstream 46941 29310354 ~ 29311230 (+)
LOC120569960 LOC104958343 coding downstream 7588 29366649 ~ 29367486 (+)
LOC120569961 LOC103391627,LOC104958343 coding downstream 28705 29387766 ~ 29388600 (+)
LOC120569965 LOC103391627 coding downstream 33247 29392308 ~ 29393154 (+)
LOC120569968 LOC103391627,LOC105922254,LOC107102032,LOC105922255,LOC104958343,LOC104945912,LOC103367775 coding downstream 42045 29401106 ~ 29421519 (+)
LOC120569967 LOC105922254,LOC107102032,LOC105922255,LOC103391627,LOC105920784 coding downstream 47481 29406542 ~ 29407365 (+)
G127872 NA non-coding upstream 64613 29292980 ~ 29293558 (+)
G127805 NA non-coding upstream 273511 29078731 ~ 29084660 (+)
G127806 NA non-coding upstream 313950 28984700 ~ 29044221 (+)
G127784 NA non-coding upstream 419681 28938151 ~ 28938490 (+)
G127762 NA non-coding upstream 441975 28915972 ~ 28916196 (+)
G127893 NA non-coding downstream 35122 29394183 ~ 29398629 (+)
G127896 LOC101169261,LOC102201764,LOC101061248,LOC102292499 non-coding downstream 96942 29456003 ~ 29456885 (+)
G127934 LOC102777138,LOC101467669,LOC104960780,LOC108238795 non-coding downstream 102851 29461912 ~ 29462923 (+)
G127942 NA non-coding downstream 127170 29486231 ~ 29489650 (+)
G127949 NA non-coding downstream 164290 29523351 ~ 29615024 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other upstream 58810 29296484 ~ 29299361 (+)
G127814 itgb5 other upstream 316947 29028902 ~ 29041224 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other upstream 948332 28388643 ~ 28409839 (+)
LOC120569906 NA other upstream 2640774 26713350 ~ 26717397 (+)
zmym2 zmym2 other upstream 2874083 26449443 ~ 26484088 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 100083 29459144 ~ 29459978 (+)
G127935 LOC103149918,LOC106933234,LOC104960782,LOC104932527,LOC108238793,LOC103482149,LOC105920790 other downstream 108083 29467144 ~ 29474550 (+)
G127938 LOC100695514,LOC102778272,LOC103367768,LOC104960783 other downstream 117051 29476112 ~ 29478950 (+)
G127971 hspd1 other downstream 262631 29621692 ~ 29622929 (+)
LOC120569632 hspe1,mob4,LOC101472107,LOC102310674,LOC100701317,LOC106530744,LOC102783361,LOC103156730,LOC108238849,LOC107095707,LOC106582314,LOC101078365,LOC107389570,LOC104932517,LOC105923971 other downstream 267396 29626457 ~ 29640925 (+)

Expression


Co-expression Network