LOC120569958 (LOC103391627,LOC102200884)


Basic Information

Item Value
gene id LOC120569958
gene name LOC103391627,LOC102200884
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 29353969 ~ 29354850 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818181.1
TGTATAAAAGGAAAGGGTTAAACAGGTAGGAAGGCAGTTCAGGAGCAGCAGCACATCTACAGCCAACATGACCAACACCAACATGAACATGAGGGGCAAGATCATCTTCTACGAGGAGAGGAACTTCCAGGGTCGCCACTATGAGTGCATGAGCGACTGCTCTGACATGACCTCCTACCTGAGCAAGTGCCACTCCTGCAGGGTGGAGAGCGGCTGCTTCATGGTCTACGACCGTCCCAACTACATGGGAAGCCAGTACTTCATGAGGAGGGGCGAGTATGCTGACTACATGAGCATGATGGGAATGAGGGACAGCATCAGGTCTTGCCGTATGATTCCCATGCACAGAGGTCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCGGTGGTCAGAGTTACGAGCTGATGGACGACTGTGACAACATCATGGACCGTTACCGTATGAACGACTGCCAGTCCTGCCACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCAACTACAGAGGCAGGATGATGTACATGAGGCCCGGAGAGTACAGGAGCTTCAGGGACATGGGCATGAGTGGCATGAGGTGGATGAGCATGAGGCGTATCACTGATTCCTGCAACTAAATGTTCACTGAATCTGTCAAACaccattaaataaataatgtctgCACTCTTTTAA

Function

NR:

description
PREDICTED: gamma-crystallin M3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818181.1 True 677 mRNA 0.51 3 29353969 29354850

Neighbor

gene id symbol gene type direction distance location
LOC120569956 LOC103391627,LOC102200884,LOC106675571,LOC103149914,LOC106933244 coding upstream 3790 29349308 ~ 29350179 (+)
LOC120569959 LOC101464856 coding upstream 7056 29346013 ~ 29346913 (+)
LOC120569955 LOC108238847,LOC106534872 coding upstream 36982 29316076 ~ 29316987 (+)
LOC120569953 LOC107102032,LOC105922254,LOC104957841,LOC105922255 coding upstream 42739 29310354 ~ 29311230 (+)
LOC120569951 LOC104957843,LOC103367760,LOC105922114,LOC103149907 coding upstream 46969 29305826 ~ 29307000 (+)
LOC120569957 LOC103391627,LOC102200884 coding downstream 3321 29358171 ~ 29359061 (+)
LOC120569960 LOC104958343 coding downstream 11799 29366649 ~ 29367486 (+)
LOC120569961 LOC103391627,LOC104958343 coding downstream 32916 29387766 ~ 29388600 (+)
LOC120569965 LOC103391627 coding downstream 37458 29392308 ~ 29393154 (+)
LOC120569968 LOC103391627,LOC105922254,LOC107102032,LOC105922255,LOC104958343,LOC104945912,LOC103367775 coding downstream 46256 29401106 ~ 29421519 (+)
G127872 NA non-coding upstream 60411 29292980 ~ 29293558 (+)
G127805 NA non-coding upstream 269309 29078731 ~ 29084660 (+)
G127806 NA non-coding upstream 309748 28984700 ~ 29044221 (+)
G127784 NA non-coding upstream 415479 28938151 ~ 28938490 (+)
G127762 NA non-coding upstream 437773 28915972 ~ 28916196 (+)
G127893 NA non-coding downstream 39333 29394183 ~ 29398629 (+)
G127896 LOC101169261,LOC102201764,LOC101061248,LOC102292499 non-coding downstream 101153 29456003 ~ 29456885 (+)
G127934 LOC102777138,LOC101467669,LOC104960780,LOC108238795 non-coding downstream 107062 29461912 ~ 29462923 (+)
G127942 NA non-coding downstream 131381 29486231 ~ 29489650 (+)
G127949 NA non-coding downstream 168501 29523351 ~ 29615024 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other upstream 54608 29296484 ~ 29299361 (+)
G127814 itgb5 other upstream 312745 29028902 ~ 29041224 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other upstream 944130 28388643 ~ 28409839 (+)
LOC120569906 NA other upstream 2636572 26713350 ~ 26717397 (+)
zmym2 zmym2 other upstream 2869881 26449443 ~ 26484088 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 104294 29459144 ~ 29459978 (+)
G127935 LOC103149918,LOC106933234,LOC104960782,LOC104932527,LOC108238793,LOC103482149,LOC105920790 other downstream 112294 29467144 ~ 29474550 (+)
G127938 LOC100695514,LOC102778272,LOC103367768,LOC104960783 other downstream 121262 29476112 ~ 29478950 (+)
G127971 hspd1 other downstream 266842 29621692 ~ 29622929 (+)
LOC120569632 hspe1,mob4,LOC101472107,LOC102310674,LOC100701317,LOC106530744,LOC102783361,LOC103156730,LOC108238849,LOC107095707,LOC106582314,LOC101078365,LOC107389570,LOC104932517,LOC105923971 other downstream 271607 29626457 ~ 29640925 (+)

Expression


Co-expression Network