LOC120569959 (LOC101464856)


Basic Information

Item Value
gene id LOC120569959
gene name LOC101464856
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 29346013 ~ 29346913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818182.1
CAGATCCTGTGGGTTTGGTCAGGTATAAAAGTAACAGTTAAAACAGGACCAACATCACTGTGCCAACATAGTTCTCTGAACTACTAACACCACAATCATGACCATGGGCAAGaTCATCTTTTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGTGCATGAGCGACTGCTCTGACATGTCCTCCTACCTGAGCAGGTGCCACTCCTGCAAGGTGGAGAGCGGCTGCTTCATGGTCTACGACCGTCCCAACTACATGGGAAACCAGTACTTCATGAGGAGGGGCGAGTACGCTGATTACATGAGCATGATGGGAATGAGAGACTGCATCAGGTCTTGCCGTATGATCCCCATGCACAGAGGTCAGTTCAGGATGAAGATCTATGAGAGGGAGAACTTCGGTGGTCAGAGTCATGAGCTGATGGACGACTGTGACAACATCATGGACCGTTACCGTATGAACGACTGCCAGTCCTGCCACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCAACTACAGAGGCAGGATGATGTACATGAGGCCCGGAGAGTACAGGAGCTTCAGGGACATGGGCATGAGTGGCATGAGGTTCATGAGCATGAAGCGTATCATGGACATGTAAAAACAGTTGTGTAGAATATGTCTAAATAAGCCAAaataataaaactttttttgacaaaata

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818182.1 True 689 mRNA 0.48 3 29346013 29346913

Neighbor

gene id symbol gene type direction distance location
LOC120569955 LOC108238847,LOC106534872 coding upstream 29026 29316076 ~ 29316987 (+)
LOC120569953 LOC107102032,LOC105922254,LOC104957841,LOC105922255 coding upstream 34783 29310354 ~ 29311230 (+)
LOC120569951 LOC104957843,LOC103367760,LOC105922114,LOC103149907 coding upstream 39013 29305826 ~ 29307000 (+)
raph1a LOC103372763,LOC102310239 coding upstream 453393 28804244 ~ 28892620 (+)
LOC120570350 NA coding upstream 608455 28735598 ~ 28737558 (+)
LOC120569956 LOC103391627,LOC102200884,LOC106675571,LOC103149914,LOC106933244 coding downstream 2395 29349308 ~ 29350179 (+)
LOC120569958 LOC103391627,LOC102200884 coding downstream 7056 29353969 ~ 29354850 (+)
LOC120569957 LOC103391627,LOC102200884 coding downstream 11258 29358171 ~ 29359061 (+)
LOC120569960 LOC104958343 coding downstream 19736 29366649 ~ 29367486 (+)
LOC120569961 LOC103391627,LOC104958343 coding downstream 40853 29387766 ~ 29388600 (+)
G127872 NA non-coding upstream 52455 29292980 ~ 29293558 (+)
G127805 NA non-coding upstream 261353 29078731 ~ 29084660 (+)
G127806 NA non-coding upstream 301792 28984700 ~ 29044221 (+)
G127784 NA non-coding upstream 407523 28938151 ~ 28938490 (+)
G127762 NA non-coding upstream 429817 28915972 ~ 28916196 (+)
G127893 NA non-coding downstream 47270 29394183 ~ 29398629 (+)
G127896 LOC101169261,LOC102201764,LOC101061248,LOC102292499 non-coding downstream 109090 29456003 ~ 29456885 (+)
G127934 LOC102777138,LOC101467669,LOC104960780,LOC108238795 non-coding downstream 114999 29461912 ~ 29462923 (+)
G127942 NA non-coding downstream 139318 29486231 ~ 29489650 (+)
G127949 NA non-coding downstream 176438 29523351 ~ 29615024 (+)
LOC120569952 LOC103367759,LOC104957842,LOC103482036,LOC106947595,LOC102235455,LOC102799479,LOC101465930,LOC102199775 other upstream 46652 29296484 ~ 29299361 (+)
G127814 itgb5 other upstream 304789 29028902 ~ 29041224 (+)
prkag3b prkag3,LOC103374929,LOC105937223,LOC107101406 other upstream 936174 28388643 ~ 28409839 (+)
LOC120569906 NA other upstream 2628616 26713350 ~ 26717397 (+)
zmym2 zmym2 other upstream 2861925 26449443 ~ 26484088 (+)
G127932 LOC103367765,LOC102202048,LOC100700231 other downstream 112231 29459144 ~ 29459978 (+)
G127935 LOC103149918,LOC106933234,LOC104960782,LOC104932527,LOC108238793,LOC103482149,LOC105920790 other downstream 120231 29467144 ~ 29474550 (+)
G127938 LOC100695514,LOC102778272,LOC103367768,LOC104960783 other downstream 129199 29476112 ~ 29478950 (+)
G127971 hspd1 other downstream 274779 29621692 ~ 29622929 (+)
LOC120569632 hspe1,mob4,LOC101472107,LOC102310674,LOC100701317,LOC106530744,LOC102783361,LOC103156730,LOC108238849,LOC107095707,LOC106582314,LOC101078365,LOC107389570,LOC104932517,LOC105923971 other downstream 279544 29626457 ~ 29640925 (+)

Expression


Co-expression Network