XLOC_004758 (ttll6)


Basic Information

Item Value
gene id XLOC_004758
gene name ttll6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 27096835 ~ 27115412 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009413
AGGGATTATATGCCAGTACCCAGACGACAGCGCGCAGTGGGGAGGATGATAGCCTTCTACTGGACTGCTAAAGCAAAGCAGTGTGAACTGAAGAATTTTCCATCTGGGGAAACCCTGCTGTCCTGCTTCTGAAGAGATCAGAATGGGGACACCAGCGGAGCGCTCAGTGAGTGAAGTGTGCCGGTGTGAGCCTGATCCAGGGCTGGAGGGAGAAGGCTGGGGAAGTGACACCCACGCGGAGCCCTCCAACACTCCAATCCCACTGCCAGTAGCCAAcaagaagaaaaagagaaagaagaaACTGTGGATAAATCTCACCAACTGCAAATATGAGAGTGtGCGTCGTGCTGCTCGCAGATATGGGATACGAGAGGCAGCAGAGGGAGAAGACTGGACTCTATACTGGACCGACTGTTCAGTCTCATTAGACAGAGTCATGGATATGAAGCGTTACCAGAAAATCAACCATTTTCCTGGTATgaatgaaatctgcaggaaggacTTGCTAGCACGGAATATGAACCGcatgctaaaactcttcccaaaGGAGTACAACATTTTTCCTCGCACATGGTGCCTTCCTGCCGATTATAGTGACTTCCAAGCCTACACCAGAGCCAAAAAGCACAAAACATTTATCTGCAAGCCAGACTCAGGTTGCCAAGGTCGTGGTATTTATCTTACCAAGTCTAACAAGGATATTCGGCCAGGAGAACACATGATTTGCCAGGTGTACATGTCCAAGCCGTTCATCATTGATGGGTTCAAGTTTGACCTGCGCATTTATGTGCTGGTGACCAGCTGTGACCCCTTCCGTGTCTTCATGTATGATGAGGGACTCGTCCGTTTTTGCACCACACATTATACTGAGCCCACTGTCAGCAACTTGGAGGATGTTTGCATGCACTTAACTAACTATGCCATCAACAAGCATAGTGAAAACTTTGTACGCGATGAAGATACTGGCAGCAAACGGAAACTCTCCAGCTTCAAGAAGCACATGGAAGACATGAGTTATGACACTGAAAAGTTGTGGACGGATATTGAGGACGTGATCATTAAAACACTAATATCAGCGCACCCCATTCTCAAACACAACTACCAAACCTGCTTTCCCAATCACGCATCTGGCAGCGCTTGCTTTGAGATCCTGGGATTTGATGTCTTACTGGATCGTCGACTGAAACCTTGGCTTCTTGAGGTCAACCATTCCCCCAGCTTCACCACAGACTCCCGCTTAGACCGGGAGGTGAAGGACAGCCTGCTGTATGACACTTTGGTGCTGATTAATCTGGGAGCCTGTGACCGCAGGAAGATCACAGAGGAGGAGAAGCGCCGTGTAAAAGAGAGACTACAGCAGAACCGCTCGAGAGAGGCCAGAAATGAGGAGCTTCGTCAGTCTCAAGCTGCAAGTATGGAGCAGATGCAGAAATATGAAGCAAAACACATGGGTGGTTTCCGGCGAATTTTCCCTCGTGACGGAGGAGAGAAATATGAAAAGTATTTCCAACACAGCAGCTCTCTTTTCCAGGAAACTGCAGCCTCTAAAGCCAGAGAGGAGTGTGCCAGGCAGCAGCTGCAGGAGTTGCGTCTGAAGCAAGAGCAGAAAGAGCGAGATAAGAAAGGATCACGTAAACAGGATCTTCAGGGTGAATCTGCAGGAGAAAAAGTAAAACCAAGAAAAAGTCAACCCCCACATAAAACTTCAAACTCATTACCAGCAATGCTTGAGCTGTCCAGCGTGAGGGAAGAGACACCTGTTTCTCTTGAGCGGATTGAGAAAGAGGAGGCCGAGAGAGTCCGAGAGCTTCAGCAGCGAGAGACTCTCCTGTTAAACATGGGCGTGGTGAATCAGGTCCGCCAGCTTCTTCAAAGTGCCAATCATCTTACTCAGTGTATCAACCACTCGCATGAACAAGCCAGCTTTCCTCCACACTGCAGACACGACCACAAGTTGGACACGCTTGCAGAGATATCGTGGAGGCAGAAGAACATCTACTCTACAATGCAACATCAAATTCTTGCCAGAAACGGGCCCAGTTTGCCGAATGTTCATTCCCAAACACTGCAAAACCGAAAACCCTGGCCCTCTCTAGAACACGGTCTCCTCCAGCCCGTCCAGACTCAAGCAGCAGCTCTCAAACACTATGGACTGGAAGAGATGGTAGCGTCAAATGCAGAGGAGCAGGCTAATCTAATTAAGGCCACTAGTGCACAACAGATACCTTTAACAATCAATGGGTCTTTCATTTGGCGTCAGGGCAGTCTGAGCTCCTCTCTGGCCGAGTCGAGAGCAAGAGCCACAATGTTAGCCATGCCTCCTCTTGGTCCAGGACGACTACATCGTCCCACCATTTTTCATGACCCCAACTCTCTCTTTATCATCTCTACCCCGGCTCCTCTTGTCCCGAGACCACACCTCTCGCACGACCTCCGAAAAGCTCCTCGCAGAGTCCTTCCACATGAGCACAGCCTCTGACCAGGGATGACACAAGTCATTCAGTAAGCGAATAAAGACTCAAGGAAGGTGTTTTGTAATGAGTGAAGAGTTGAAGGTGAGAAGGTGCGCATTCACTACCTGTCTTCCAGactgaaaatgtcaaattttTGTCTTCACTAATTTTAATTTGAATgccatttttcctttttttccctgTAATTTGTTACAATTGCAGTCAGTCGTTTAGCCTATTTTGAAGAGTGCAGAGGGCTGGTGCCTGCTGCTACCTTAAATTGTAGGTATTATCGGATTAAAACAAGCCATAAGttcataattttaaattaaatgaatgtgaATATCCTTTGTTTAACACAGTCTTGTAAGCTATTTCATGTCATTCTAAGCCAATtagtataaataaacattttaatgaatgttttttgtttattagaaTGCTGATCTAAAGGAATAGGTCAAATATTTCAATTCATGATGGGTCTTGTCCTGCCAGTATGACTTCTTAGAACATATATGAAAATAAACAGGGTACAATATTGCCCATTTATTCTCAGAAACAGAAATTTCTATGCAATTTGTGCTGTAAAACAGAGTTTGTACATTGtttaaatgctgggttgtttcaataaaaatatggtaaaata
>TCONS_00009414
TGTGTGCTCTCAGAATGGGGACACCAGCGGAGCGCTCAGTGAGTGAAGTGTGCCGGTGTGAGCCTGATCCAGGGCTGGAGGGAGAAGGCTGGGGAAGTGACACCCACGCGGAGCCCTCCAACACTCCAATCCCACTGCCAGTAGCCAAcaagaagaaaaagagaaagaagaaACTGTGGATAAATCTCACCAACTGCAAATATGAGAGTGtGCGTCGTGCTGCTCGCAGATATGGGATACGAGAGGCAGCAGAGGGAGAAGACTGGACTCTATACTGGACCGACTGTTCAGTCTCATTAGACAGAGTCATGGATATGAAGCGTTACCAGAAAATCAACCATTTTCCTGGTATgaatgaaatctgcaggaaggacTTGCTAGCACGGAATATGAACCGcatgctaaaactcttcccaaaGGAGTACAACATTTTTCCTCGCACATGGTGCCTTCCTGCCGATTATAGTGACTTCCAAGCCTACACCAGAGCCAAAAAGCACAAAACATTTATCTGCAAGCCAGACTCAGGTTGCCAAGGTCGTGGTATTTATCTTACCAAGTCTAACAAGGATATTCGGCCAGGAGAACACATGATTTGCCAGGTGTACATGTCCAAGCCGTTCATCATTGATGGGTTCAAGTTTGACCTGCGCATTTATGTGCTGGTGACCAGCTGTGACCCCTTCCGTGTCTTCATGTATGATGAGGGACTCGTCCGTTTTTGCACCACACATTATACTGAGCCCACTGTCAGCAACTTGGAGGATGTTTGCATGCACTTAACTAACTATGCCATCAACAAGCATAGTGAAAACTTTGTACGCGATGAAGATACTGGCAGCAAACGGAAACTCTCCAGCTTCAAGAAGCACATGGAAGACATGAGTTATGACACTGAAAAGTTGTGGACGGATATTGAGGACGTGATCATTAAAACACTAATATCAGCGCACCCCATTCTCAAACACAACTACCAAACCTGCTTTCCCAATCACGCATCTGGCAGCGCTTGCTTTGAGATCCTGGGATTTGATGTCTTACTGGATCGTCGACTGAAACCTTGGCTTCTTGAGGTCAACCATTCCCCCAGCTTCACCACAGACTCCCGCTTAGACCGGGAGGTGAAGGACAGCCTGCTGTATGACACTTTGGTGCTGATTAATCTGGGAGCCTGTGACCGCAGGAAGATCACAGAGGAGGAGAAGCGCCGTGTAAAAGAGAGACTACAGCAGAACCGCTCGAGAGAGGCCAGAAATGAGGAGCTTCGTCAGTCTCAAGCTGCAAGTATGGAGCAGATGCAGAAATATGAAGCAAAACACATGGGTGGTTTCCGGCGAATTTTCCCTCGTGACGGAGGAGAGAAATATGAAAAGTATTTCCAACACAGCAGCTCTCTTTTCCAGGAAACTGCAGCCTCTAAAGCCAGAGAGGAGTGTGCCAGGCAGCAGCTGCAGGAGTTGCGTCTGAAGCAAGAGCAGAAAGAGCGAGATAAGAAAGGATCACGTAAACAGGATCTTCAGGGTGAATCTGCAGGAGAAAAAGTAAAACCAAGAAAAAGTCAACCCCCACATAAAACTTCAAACTCATTACCAGCAATGCTTGAGCTGTCCAGCGTGAGGGAAGAGACACCTGTTTCTCTTGAGCGGATTGAGAAAGAGGAGGCCGAGAGAGTCCGAGAGCTTCAGCAGCGAGAGACTCTCCTGTTAAACATGGGCGTGGTGAATCAGGTCCGCCAGCTTCTTCAAAGTGCCAATCATCTTACTCAGTGTATCAACCACTCGCATGAACAAGCCAGCTTTCCTCCACACTGCAGACACGACCACAAGTTGGACACGCTTGCAGAGATATCGTGGAGGCAGAAGAACATCTACTCTACAATGCAACATCAAATTCTTGCCAGAAACGGGCCCAGTTTGCCGAATGTTCATTCCCAAACACTGCAAAACCGAAAACCCTGGCCCTCTCTAGAACACGGTCTCCTCCAGCCCGTCCAGACTCAAGCAGCAGCTCTCAAACACTATGGACTGGAAGAGATGGTAGCGTCAAATGCAGAGGAGCAGGCTAATCTAATTAAGGCCACTAGTGCACAACAGATACCTTTAACAATCAATGGGTCTTTCATTTGGCGTCAGGGCAGTCTGAGCTCCTCTCTGGCCGAGTCGAGAGCAAGAGCCACAATGTTAGCCATGCCTCCTCTTGGTCCAGGACGACTACATCGTCCCACCATTTTTCATGACCCCAACTCTCTCTTTATCATCTCTACCCCGGCTCCTCTTGTCCCGAGACCACACCTCTCGCACGACCTCCGAAAAGCTCCTCGCAGAGTCCTTCCACATGAGCACAGCCTCTGACCAGGGATGACACAAGTCATTCAGTAAGCGAATAAAGACTCAAGGAAGG
>TCONS_00009415
GTGGAGGCAGAAGAACATCTACTCTACAATGCAACATCAAATTCTTGCCAGAAACGGGCCCAGTTTGCCGAATGTTCATTCCCAAACACTGCAAAACCGAAAACCCTGGCCCTCTCTAGAACACGGTCTCCTCCAGCCCGTCCAGACTCAAGCAGCAGCTCTCAAACACTATGGACTGGAAGAGATGTCAATGGGTCTTTCATTTGGCGTCAGGGCAGTCTGAGCTCCTCTCTGGCCGAGTCGAGAGCAAGAGCCACAATGTTAGCCATGCCTCCTCTTGGTCCAGGACGACTACATCGTCCCACCATTTTTCATGACCCCAACTCTCTCTTTATCATCTCTACCCCGGCTCCTCTTGTCCCGAGACCACACCTCTC

Function

symbol description
ttll6 Enables tubulin-glutamic acid ligase activity. Involved in protein polyglutamylation. Acts upstream of or within axoneme assembly and cilium movement. Located in cilium. Is expressed in lateral line; peripheral olfactory organ; and pronephros. Orthologous to several human genes including TTLL6 (tubulin tyrosine ligase like 6).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0018095 protein polyglutamylation biological_process
GO:0035082 axoneme assembly biological_process
GO:0006464 cellular protein modification process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0030030 cell projection organization biological_process
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0070739 protein-glutamic acid ligase activity molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080107-1 Enables tubulin-glutamic acid ligase activity. Involved in protein polyglutamylation. Acts upstream of or within axoneme assembly and cilium movement. Located in cilium. Is expressed in lateral line; peripheral olfactory organ; and pronephros. Orthologous to several human genes including TTLL6 (tubulin tyrosine ligase like 6).

Ensembl:

ensembl_id ENSDARG00000054023

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009413 False 3102 mRNA 0.46 15 27096835 27115412
TCONS_00009414 False 2400 mRNA 0.49 14 27099943 27114838
TCONS_00009415 True 377 mRNA 0.52 2 27114199 27114734

Neighbor

gene id symbol gene type direction distance location
XLOC_004757 srcap coding upstream 4549 27061720 ~ 27092286 (+)
XLOC_004756 fbrs coding upstream 35499 27034594 ~ 27061336 (+)
XLOC_004755 msl1b coding upstream 68027 27021979 ~ 27028808 (+)
XLOC_004753 znf438 coding upstream 131837 26877381 ~ 26964998 (+)
XLOC_004754 BX469896.1 coding upstream 200219 26894321 ~ 26896616 (+)
XLOC_004759 hoxb8b coding downstream 2197 27117609 ~ 27120171 (+)
XLOC_004760 hoxb6b coding downstream 11727 27127139 ~ 27128768 (+)
XLOC_004761 hoxb5b coding downstream 14247 27129659 ~ 27131735 (+)
XLOC_004762 dre-mir-10a coding downstream 19457 27134869 ~ 27134967 (+)
XLOC_004763 hoxb1b coding downstream 25728 27141140 ~ 27142834 (+)
XLOC_004752 NA non-coding upstream 262643 26737431 ~ 26834192 (+)
XLOC_004751 NA non-coding upstream 404784 26691819 ~ 26692051 (+)
XLOC_004748 NA non-coding upstream 503537 26589644 ~ 26593298 (+)
XLOC_004744 NA non-coding upstream 604862 26489353 ~ 26491973 (+)
XLOC_004777 NA non-coding downstream 1261618 28377030 ~ 28381255 (+)
XLOC_004779 NA non-coding downstream 1502289 28617701 ~ 28617965 (+)
XLOC_004786 NA non-coding downstream 1818112 28933524 ~ 28946150 (+)
XLOC_004791 AL732488.1 non-coding downstream 1898161 29013573 ~ 29013690 (+)

Expression


Co-expression Network